mRNA_S-ischiensis_contig86.20197.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig86.20197.1
Unique NamemRNA_S-ischiensis_contig86.20197.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig86.20197.1 vs. uniprot
Match: A0A6H5JGV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGV2_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 5.060e-19
Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = 2 
Query:  131 DHQARDSASSILLNHSWVSLYRPGRLPVVSFCYTLLTRSQVSAVMLVDSMSTMAVQAVFYGKSQFSVNQKVIMVVTSMLFMMPALALFPWLLRIANTPPQSQTV 442
            DH A+    S+L+NH+W  L      P   F  TLLTRSQ   ++L D MS +A+QAVFYGKSQFS+  K  M VT+ LFM+P   +FP+LLR ANTPP S+TV
Sbjct:   86 DHLAKTIVGSVLMNHAWSHLRSS---PTTHFRKTLLTRSQHLVLLLADWMSAVALQAVFYGKSQFSIRNKAQMTVTTALFMIPTALVFPFLLRKANTPPISETV 186
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BLAST of mRNA_S-ischiensis_contig86.20197.1 vs. uniprot
Match: A0A6H5JCS7_9PHAE (REJ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS7_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.690e-17
Identity = 53/99 (53.54%), Postives = 63/99 (63.64%), Query Frame = 2 
Query:  149 SASSILLNHSWVSLYRPGRLPVVSFCYTLLTRSQVSAVMLVDSMSTMAVQAVFYGKSQFSVNQKVIMVVTSMLFMMPALALFPWLLRIANTPPQSQTVK 445
            +A S+L NHSW  L      P   F  TLLTRSQ   ++L D MS + +QA+FYGKSQF V QKV M V S L M+P   +FP LLR  NTPP SQT+K
Sbjct:  924 AAESVLFNHSWRHL---SESPTAHFSKTLLTRSQHLVLLLADWMSAILLQAIFYGKSQFGVRQKVEMTVVSALLMLPTGVIFPALLRAGNTPPASQTLK 1019
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BLAST of mRNA_S-ischiensis_contig86.20197.1 vs. uniprot
Match: D7FJB6_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJB6_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.140e-13
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 2 
Query:  158 SILLNHSWVSLYRPGRLPVVSFCYTLLTRSQVSAVMLVDSMSTMAVQAVFYGKSQFSVNQKVIMVVTSMLFMMPALALFPWLLRIANTPPQSQTV 442
            S+L NHSW  L      P   F  TLLTR Q   ++L D MS + +QA+FYGKSQF V     M V S LFM+PA  +FP LLR+ANTPP SQT+
Sbjct: 1078 SLLFNHSWRHL---SGSPTAHFKRTLLTRPQHLVLLLTDWMSAIVLQALFYGKSQFGVE----MAVVSALFMLPAGVVFPALLRVANTPPASQTL 1165
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BLAST of mRNA_S-ischiensis_contig86.20197.1 vs. uniprot
Match: D7G0E1_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0E1_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.380e-7
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 2 
Query:  140 ARDSASSILLNHSWVSLYRPGRLPVVSFCYTLLTRSQVSAVMLVDSMSTMAVQAVFYGKSQFSVNQKVI 346
            A  SA S+ +NH+W  L+     P   F  TLLTRSQ   ++L D MS +A+QAVFYGKSQ S+ QKV+
Sbjct:  382 ATASAKSVFMNHAWRHLWGS---PTEHFKKTLLTRSQHLVILLADWMSAVALQAVFYGKSQVSIRQKVL 447
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BLAST of mRNA_S-ischiensis_contig86.20197.1 vs. uniprot
Match: D7G0E0_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0E0_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.810e-7
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 2 
Query:  125 PCDHQARDSASSILLNHSWVSLYRPGRLPVVSFCYTLLTRSQVSAVMLVDSMSTMAVQAVFYGKSQFSVNQK 340
            P  H A  + SSIL+NH W  L+     P   F  TLLTRSQ   ++L D MS + +QA+FYGKSQFS+ +K
Sbjct:  343 PDRHLATVTLSSILMNHPWRHLWVS---PTEHFKKTLLTRSQHLVILLADWMSVLTLQAIFYGKSQFSIREK 411
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BLAST of mRNA_S-ischiensis_contig86.20197.1 vs. uniprot
Match: A0A6H5JVI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI0_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 3.950e-7
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 2 
Query:  278 MSTMAVQAVFYGKSQFSVNQKVIMVVTSMLFMMPALALFPWLLRIANTPPQSQTV 442
            MS + +QA+FYGKSQFS+ +K  M   + LFM+P   +FP ++R+ANTPP S+T+
Sbjct:    1 MSAVTLQAIFYGKSQFSIREKAEMTAATALFMIPTALVFPAMMRLANTPPSSETL 55
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig86.20197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JGV2_9PHAE5.060e-1952.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCS7_9PHAE3.690e-1753.54REJ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FJB6_ECTSI1.140e-1352.63GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0E1_ECTSI2.380e-750.72GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0E0_ECTSI2.810e-748.61GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JVI0_9PHAE3.950e-750.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig86contigS-ischiensis_contig86:291751..294774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size939
Cds size675
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig86.20197.1prot_S-ischiensis_contig86.20197.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig86 292013..294774 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817346.0524042-UTR-S-ischiensis_contig86:291750..2920121622817346.0524042-UTR-S-ischiensis_contig86:291750..292012Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 291751..292012 +
1695741044.5769594-UTR-S-ischiensis_contig86:291750..2920121695741044.5769594-UTR-S-ischiensis_contig86:291750..292012Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 291751..292012 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817346.0649288-CDS-S-ischiensis_contig86:292012..2920481622817346.0649288-CDS-S-ischiensis_contig86:292012..292048Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 292013..292048 +
1695741044.5958982-CDS-S-ischiensis_contig86:292012..2920481695741044.5958982-CDS-S-ischiensis_contig86:292012..292048Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 292013..292048 +
1622817346.0790799-CDS-S-ischiensis_contig86:292354..2923961622817346.0790799-CDS-S-ischiensis_contig86:292354..292396Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 292355..292396 +
1695741044.6065848-CDS-S-ischiensis_contig86:292354..2923961695741044.6065848-CDS-S-ischiensis_contig86:292354..292396Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 292355..292396 +
1622817346.0908382-CDS-S-ischiensis_contig86:293299..2935011622817346.0908382-CDS-S-ischiensis_contig86:293299..293501Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 293300..293501 +
1695741044.61664-CDS-S-ischiensis_contig86:293299..2935011695741044.61664-CDS-S-ischiensis_contig86:293299..293501Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 293300..293501 +
1622817346.1024888-CDS-S-ischiensis_contig86:294027..2943251622817346.1024888-CDS-S-ischiensis_contig86:294027..294325Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 294028..294325 +
1695741044.6273367-CDS-S-ischiensis_contig86:294027..2943251695741044.6273367-CDS-S-ischiensis_contig86:294027..294325Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 294028..294325 +
1622817346.1162229-CDS-S-ischiensis_contig86:294677..2947741622817346.1162229-CDS-S-ischiensis_contig86:294677..294774Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 294678..294774 +
1695741044.6406605-CDS-S-ischiensis_contig86:294677..2947741695741044.6406605-CDS-S-ischiensis_contig86:294677..294774Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 294678..294774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig86.20197.1

>prot_S-ischiensis_contig86.20197.1 ID=prot_S-ischiensis_contig86.20197.1|Name=mRNA_S-ischiensis_contig86.20197.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=225bp
MLVDSMSTMAVQAVFYGKSQFSVNQKVIMVVTSMLFMMPALALFPWLLRI
ANTPPQSQTVKAAKECREIARERVIQKKREAKFCLETEMEGNTAESSHDL
DDVPLGWGNYTLRKTERNRRKSSVRNRRKSSVLAVVQAVQQNKAVSFLLD
EAHGRDYSYLDDPDDWRNDLYHKEQEEDDDSQLGGLGVPCTELNDDIAQL
HMILVLADLALCVVFFTFISVLLNM
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mRNA from alignment at S-ischiensis_contig86:291751..294774+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig86.20197.1 ID=mRNA_S-ischiensis_contig86.20197.1|Name=mRNA_S-ischiensis_contig86.20197.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3024bp|location=Sequence derived from alignment at S-ischiensis_contig86:291751..294774+ (Schizocladia ischiensis KU_0333)
CCTGAACTGCACTACTGTATGTCCGCTTCGGCTGTGCATACTACGAAACG
TTTACAATAGGTACATTCGCACCAGGTACAGGCTGTAACATCATGCCATT
CACGACCCCCCCCACCTCACACACCCCTGTGATCACCAGGCCAGAGACTC
AGCGTCCAGCATCCTTCTGAACCATAGTTGGGTCTCTCTCTACCGCCCGG
GGAGGCTCCCGGTGGTTTCCTTCTGCTACACCCTCCTCACACGTTCTCAG
GTGTCCGCTGTCATGCTGGTGGACTCCATGTCGACAATGGCCGTGCAGGT
CGGTACACAAAAGTTGTTCTTGCATGTGTGGTTGCAGGTATCTCTTCGTC
TCCCTCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTccccCCCCC
CCCGCCGCCCCCCCTCCCTCTCTGTGCAAATCCCAGCCAACAAAGTAGAT
GCCCTGTTGCAGCTTGACAGAGCTGACTGCTGGCGCACTTTCGCCCCGGC
GAGTCCACCTGGGACGGCATCAGTAACGCCTGTTCTCCTTGCACATGGCT
CCGCATGGGGCCTTGGCACGCATCCACCCCCCCCCACGGAATTGCACATG
GCAGGCGGTGTTCTATGGGAAATCGCAGTTCTCTGTCAACCAGAAGGTGA
GCAGGGGGCAGGGGCAGGCTGCTTCCGGTGCTCCCGTGCCTTGTGCTGCT
GTGACTTTCGTCCGTCCCCAACGCACAAGAGCTGTGTAAGGCTGCCCCAC
TGTAACAATGGAGGCTATATATACTCGAAGTACAAGACTATGTGTACGCT
CACCTCAGCCCGAGGGGCTGCACCCTGTTGTCAAGCACCTGCGGCGCCCT
GGCTTTGGCCGGCCACAAGCACCCGGCGACCTCCCCCATGCTCCTGCTCG
TGCGATACTGTAGTATCATGAAACTGTGCGGTACTTCCAAGCCCTGTCGT
GCAGGGGCGCTCCGATGCATTTTGACGCATGGCGCTCCGATGCATTTTGA
CGCATGCAAAATGTGCCCCCCCTTGGGCTTTCATCCCCACCCTGGCTGTT
TTCTTGCGCACTCTGCATCTGACTGCTTCGGGTTTTGTTGGTGCGGTCAC
GCCTTCCATGTGGCTCCGAGCACACCCCATGGTGCCTGCTTGGGGGTTGC
TCTTCACACCTACGCCTGCACCATGCCAAGTGGCAACTAAGTGCTCACAC
TTACTGTACAGTAAGTGCTTCGAAGCATACAGTGTGCGCCACACGCCACG
CCACAAAGACAAAGTCCGGAGCCATTTCGCCACCAGAAGCCGTGAAAGCG
GCGCGCCTCGGATGGATTGCCCCGAAACACTACCTTGTCGGATAAGAGAG
ACGGTGGGTCACTGGCAGAACTCCGAGTCCTTCCAAGCCGCCCCAGAACG
CTAAAGGGCAAACTTGCCCGCGCAGCACGCCTGGAATCCTCACAACCATA
GCCTCCAGCGGTGGGGTGGGTTCAGGGTGTCCGCCTGAGAATCGACCAGG
GGTCATGAAACTGCGAACTTTCCGCGCACGCACCCCACCACCGCGACAGG
TCATCATGGTGGTCACGTCCATGCTCTTCATGATGCCGGCGTTGGCACTA
TTCCCGTGGCTCCTGCGGATCGCCAACACGCCCCCGCAGTCCCAGACGGT
CAAGGCGGCGAAGGAATGCCGGGAAATCGCCAGAGAGCGCGTCATTCAGA
AGAAGCGGGAGGCCAAATTTTGTCTGGAGACGGAGATGGAAGGAAACACA
GGTGTGGGACGGTAGCCACGCATGCAGTGCGGGTTTCCCAAATGATTGCA
AAGACTGCGTACGGAAAGGGGCAGTGCTACGATGGGCTGGGTCCTGCTCC
CTGGGGACTGAAACTTGTTCAGTGCGTGAAGTGCAGTGCAGTGTAGTACT
TCCCGAGTCAATGCCCGATACCTTTCCGGTAACAAAGCAGTACTAAGTAT
GCCGTGGATAGGGTAAGTCCACTAAAAAGAAGTTCAAGCTGTGGAGGGAG
CGGTGTGCCAGAGCACCTCAGTGCTTGAAAACCGACAGCGACACAAACTA
ACCTCGACGTACGTACTCAGTACCTAGTGCACGTCTACAGTACTAAGTCA
GTGCACTTGAAAGCGTGCAAAGGATTGTACCTACTGTACAGTGCATGACA
GGCACAATGCAGTGCTCGAGTGTTTAGCACCGCACAGTGCGAAAACGGGC
GGTTCGCAACGTCTTTGCCCGCCACTCAGAGGCCCCGCCCCCTACCCCAA
AACCGCACCCCACCCCACCTCGTCTAGCGGAGAGCTCTCATGACCTTGAC
GATGTACCACTGGGGTGGGGGAACTACACGCTAAGGAAGACGGAGAGGAA
CCGCCGCAAGTCATCTGTGCGGAATCGCCGCAAGTCGTCTGTGCTAGCAG
TGGTGCAAGCGGTGCAACAGAACAAAGCAGTGTCTTTTCTTCTGGACGAA
GCTCACGGTCGGGACTACTCGTACCTTGATGACCCGGACGACTGGAGGAA
CGACCTGTATCACAAGGAGCAGGAGGAGGATGACGATTCCCAGCTGGGAG
GGCTCGGGGTGCCGTGCACAGAACTGTGAGCAATTCTTCGCTGCTCCAGC
AGCATCTCCTCTCTCTTTTGTGTCTCCCAGGGCGGGCACTGCACGCCCAA
CTGTGGCCGCTTTGTCGCTGTTTTGGGGCACATACCCGATACCCCCAGCA
CCATGCCTCCAGCACCTGCCATACCCCGCTTGCTCAAGCGTTTTTGGCTG
TGCCAACACCTGGAAGCCAAAAAGCTTTGTGCCTTCCCACCCCTGCAGCG
CGGGATGTCTGCACGTCTCGGGAGGATGCTGTACTGTAATCGCGCCGTTC
TACGGCAGGGTTCCTCCCCGTGCCTCACCGGCTGTTGTGCCCACCCCCTT
CCCCCCGGTCTGCGCTCCCCGAGACAGGAACGACGACATTGCACAGCTGC
ACATGATCCTGGTGCTGGCGGACCTGGCGCTCTGCGTCGTCTTCTTCACC
TTCATCAGCGTGCTGTTAAATATG
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Coding sequence (CDS) from alignment at S-ischiensis_contig86:291751..294774+

>mRNA_S-ischiensis_contig86.20197.1 ID=mRNA_S-ischiensis_contig86.20197.1|Name=mRNA_S-ischiensis_contig86.20197.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1350bp|location=Sequence derived from alignment at S-ischiensis_contig86:291751..294774+ (Schizocladia ischiensis KU_0333)
ATGCTGGTGGACTCCATGTCGACAATGGCCGTGCAGATGCTGGTGGACTC
CATGTCGACAATGGCCGTGCAGGCGGTGTTCTATGGGAAATCGCAGTTCT
CTGTCAACCAGAAGGCGGTGTTCTATGGGAAATCGCAGTTCTCTGTCAAC
CAGAAGGTCATCATGGTGGTCACGTCCATGCTCTTCATGATGCCGGCGTT
GGCACTATTCCCGTGGCTCCTGCGGATCGCCAACACGCCCCCGCAGTCCC
AGACGGTCAAGGCGGCGAAGGAATGCCGGGAAATCGCCAGAGAGCGCGTC
ATTCAGAAGAAGCGGGAGGCCAAATTTTGTCTGGAGACGGAGATGGAAGG
AAACACAGGTCATCATGGTGGTCACGTCCATGCTCTTCATGATGCCGGCG
TTGGCACTATTCCCGTGGCTCCTGCGGATCGCCAACACGCCCCCGCAGTC
CCAGACGGTCAAGGCGGCGAAGGAATGCCGGGAAATCGCCAGAGAGCGCG
TCATTCAGAAGAAGCGGGAGGCCAAATTTTGTCTGGAGACGGAGATGGAA
GGAAACACAGCGGAGAGCTCTCATGACCTTGACGATGTACCACTGGGGTG
GGGGAACTACACGCTAAGGAAGACGGAGAGGAACCGCCGCAAGTCATCTG
TGCGGAATCGCCGCAAGTCGTCTGTGCTAGCAGTGGTGCAAGCGGTGCAA
CAGAACAAAGCAGTGTCTTTTCTTCTGGACGAAGCTCACGGTCGGGACTA
CTCGTACCTTGATGACCCGGACGACTGGAGGAACGACCTGTATCACAAGG
AGCAGGAGGAGGATGACGATTCCCAGCTGGGAGGGCTCGGGGTGCCGTGC
ACAGAACTCGGAGAGCTCTCATGACCTTGACGATGTACCACTGGGGTGGG
GGAACTACACGCTAAGGAAGACGGAGAGGAACCGCCGCAAGTCATCTGTG
CGGAATCGCCGCAAGTCGTCTGTGCTAGCAGTGGTGCAAGCGGTGCAACA
GAACAAAGCAGTGTCTTTTCTTCTGGACGAAGCTCACGGTCGGGACTACT
CGTACCTTGATGACCCGGACGACTGGAGGAACGACCTGTATCACAAGGAG
CAGGAGGAGGATGACGATTCCCAGCTGGGAGGGCTCGGGGTGCCGTGCAC
AGAACTGAACGACGACATTGCACAGCTGCACATGATCCTGGTGCTGGCGG
ACCTGGCGCTCTGCGTCGTCTTCTTCACCTTCATCAGCGTGCTGTTAAAT
ATGGAACGACGACATTGCACAGCTGCACATGATCCTGGTGCTGGCGGACC
TGGCGCTCTGCGTCGTCTTCTTCACCTTCATCAGCGTGCTGTTAAATATG
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