mRNA_S-ischiensis_contig86.20196.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig86.20196.1
Unique NamemRNA_S-ischiensis_contig86.20196.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig86.20196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig86contigS-ischiensis_contig86:288079..289312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817347.517878-CDS-S-ischiensis_contig86:288078..2882131622817347.517878-CDS-S-ischiensis_contig86:288078..288213Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 288079..288213 +
1695741045.8011346-CDS-S-ischiensis_contig86:288078..2882131695741045.8011346-CDS-S-ischiensis_contig86:288078..288213Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 288079..288213 +
1622817347.532535-CDS-S-ischiensis_contig86:289250..2893101622817347.532535-CDS-S-ischiensis_contig86:289250..289310Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 289251..289310 +
1695741045.81606-CDS-S-ischiensis_contig86:289250..2893101695741045.81606-CDS-S-ischiensis_contig86:289250..289310Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 289251..289310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig86.20196.1prot_S-ischiensis_contig86.20196.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig86 288079..289310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig86.20196.1

>prot_S-ischiensis_contig86.20196.1 ID=prot_S-ischiensis_contig86.20196.1|Name=mRNA_S-ischiensis_contig86.20196.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=65bp
VDGDGQVYLVCQTHHLTTFAVVPRDQEPPNWNTIDPVGDLTVLSQYGTDT
FLPLLVLSVVVAFYL
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mRNA from alignment at S-ischiensis_contig86:288079..289312+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig86.20196.1 ID=mRNA_S-ischiensis_contig86.20196.1|Name=mRNA_S-ischiensis_contig86.20196.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1234bp|location=Sequence derived from alignment at S-ischiensis_contig86:288079..289312+ (Schizocladia ischiensis KU_0333)
GTGGATGGAGATGGCCAGGTGTACCTGGTATGCCAGACGCACCACCTAAC
CACTTTCGCGGTGGTGCCCCGGGACCAGGAACCGCCCAACTGGAACACCA
TTGACCCCGTTGGGGATCTCACCGTGCTGAGTCAGGTGGGTGTGGCAGAC
ACAGATACGGACGGGCAGGAAGAAAGACAGATATACAGCCAGAGGAACGA
GCAAGGCAAGCAGACAGGCACAGACAGGCGGACGGCGGGCAAAGGAGGCG
GGGGGGTGGAGACGTAGAGAGACAGGCGGAGAGGTAGACAGCGGGGCATA
CAGATTCAGAAGGGCAGACTCGAAGGGAGACAGAGAGCTGAGAGCCAGGC
GGGCATGGCAGGCAGGCACACAACCATACATGCCAAGAGATACACGGGCA
TGGTAGGCATGGCACGCAGGCAGCCAGACGAGCAGACAGACAGACATACA
CGGCAGGCAGGCAGGCAGGTAAGGCAGGCAGACTGACAGACAGGTATTTA
GACGCACCGCAGAACATGGCGGTACTTTGCCTTGTCTCGAGTACTGCCCC
GGGTGGTGCAGCGGACCAAGGCCCATTCTTACGCACTGGCATTTGCATTG
TGCCCGGAATTCCAGGCTACTGTAATACTGTACTCATACTTCGGAAGCAC
GTACAACGGCACAATACAGTCGGAATGACGCGCAACTGCCGGCCCTGGCA
CCTCTGCGGGCACAGCAGTCGCTCAAGTTGTTGTGCTACTGCGCTGCCTC
ATTCCCCAAGTACTTCGAAGCAGTACTGTGCCCGCGTCAAACTTCTGTAA
CTTCAATGTACTGTCGCATTCTTTGTACAATACACAGTCACCTGTACTCT
GAGTATCTATTTACAGTAATGTCAAGCACGCGGGTGCACCCCTCCCGCTA
CCCTCTAGCAGCCCCGGCTCCAATACTTGTAGTCGTGCCTTTGCCACAGC
CCATGAATGCGCCACGATAACTTGTTTTACAGCTCGTCTCACCCTTCTGT
GCTGGGGCTTTCGTGCCAGCGCTGCACTCCGGGCAAGCTTCGCTCCGTTG
CTCGGCACATCAATCAAACTGTTCAATTCTCTCTCGAGCCGATACGGTTC
GCCCATGACTAACCACCATACACTGAACACAAGTCTGCCACTCCGCTCCC
CCATCCTCCCGTCCCGAACCAGTATGGAACGGACACGTTTCTGCCTCTGC
TGGTCCTGTCCGTAGTGGTGGCATTCTACCTGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig86:288079..289312+

>mRNA_S-ischiensis_contig86.20196.1 ID=mRNA_S-ischiensis_contig86.20196.1|Name=mRNA_S-ischiensis_contig86.20196.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=390bp|location=Sequence derived from alignment at S-ischiensis_contig86:288079..289312+ (Schizocladia ischiensis KU_0333)
GTGGATGGAGATGGCCAGGTGTACCTGGTATGCCAGACGCACCACCTAAC
CACTTTCGCGGTGGTGCCCCGGGACCAGGAACCGCCCAACTGGAACACCA
TTGACCCCGTTGGGGATCTCACCGTGCTGAGTCAGGTGGATGGAGATGGC
CAGGTGTACCTGGTATGCCAGACGCACCACCTAACCACTTTCGCGGTGGT
GCCCCGGGACCAGGAACCGCCCAACTGGAACACCATTGACCCCGTTGGGG
ATCTCACCGTGCTGAGTCAGTATGGAACGGACACGTTTCTGCCTCTGCTG
GTCCTGTCCGTAGTGGTGGCATTCTACCTGTATGGAACGGACACGTTTCT
GCCTCTGCTGGTCCTGTCCGTAGTGGTGGCATTCTACCTG
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