mRNA_S-ischiensis_contig86.20195.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig86.20195.1
Unique NamemRNA_S-ischiensis_contig86.20195.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig86.20195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig86contigS-ischiensis_contig86:253516..258411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1857
Cds size1086
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig86.20195.1prot_S-ischiensis_contig86.20195.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig86 254158..258282 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.9471865-UTR-S-ischiensis_contig86:253515..2541571622817345.9471865-UTR-S-ischiensis_contig86:253515..254157Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 253516..254157 -
1695741044.4921522-UTR-S-ischiensis_contig86:253515..2541571695741044.4921522-UTR-S-ischiensis_contig86:253515..254157Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 253516..254157 -
1622817346.0148797-UTR-S-ischiensis_contig86:258282..2584111622817346.0148797-UTR-S-ischiensis_contig86:258282..258411Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 258283..258411 -
1695741044.5524137-UTR-S-ischiensis_contig86:258282..2584111695741044.5524137-UTR-S-ischiensis_contig86:258282..258411Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 258283..258411 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.9594119-CDS-S-ischiensis_contig86:254157..2543651622817345.9594119-CDS-S-ischiensis_contig86:254157..254365Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 254158..254365 -
1695741044.506567-CDS-S-ischiensis_contig86:254157..2543651695741044.506567-CDS-S-ischiensis_contig86:254157..254365Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 254158..254365 -
1622817345.9718304-CDS-S-ischiensis_contig86:256220..2564001622817345.9718304-CDS-S-ischiensis_contig86:256220..256400Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 256221..256400 -
1695741044.5180137-CDS-S-ischiensis_contig86:256220..2564001695741044.5180137-CDS-S-ischiensis_contig86:256220..256400Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 256221..256400 -
1622817345.9864404-CDS-S-ischiensis_contig86:256931..2569941622817345.9864404-CDS-S-ischiensis_contig86:256931..256994Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 256932..256994 -
1695741044.5296154-CDS-S-ischiensis_contig86:256931..2569941695741044.5296154-CDS-S-ischiensis_contig86:256931..256994Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 256932..256994 -
1622817346.0031664-CDS-S-ischiensis_contig86:257647..2582821622817346.0031664-CDS-S-ischiensis_contig86:257647..258282Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 257648..258282 -
1695741044.5410717-CDS-S-ischiensis_contig86:257647..2582821695741044.5410717-CDS-S-ischiensis_contig86:257647..258282Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 257648..258282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig86.20195.1

>prot_S-ischiensis_contig86.20195.1 ID=prot_S-ischiensis_contig86.20195.1|Name=mRNA_S-ischiensis_contig86.20195.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=362bp
MVGACIPAFTGSLRGQGRGTPTQVAWRRPRGSIHTIEPGSMQQVIGEKKC
FGARTGNARAFRSNVEPGSIFGAWAWARPPPPPTPFIPKARDTSPPQLFS
LIQAALHHDEERRGPAPGPRLPLLDRVREQRRQPRAKAWRGQARQAPPSV
LRGQGGHGHLLQRVPRSQWEALQRCHRPRAQPGLRRHGVRSVLVRGGPAG
PAGPPRQARRAGDSRARGGDRRHRRQGPRRAARRSWVERPPWNPGRAGTP
GAAWSQGRNGPHGSKGRRGGAGPKGGNGSHGPQGREGRHGRAGPARSPGP
PGKDGIDGKDGLKGKDGVDGKNGLPGKDGIDGKSGVDGKDGVDGMDGVHG
RDGKYGPAGEH*
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mRNA from alignment at S-ischiensis_contig86:253516..258411-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig86.20195.1 ID=mRNA_S-ischiensis_contig86.20195.1|Name=mRNA_S-ischiensis_contig86.20195.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4896bp|location=Sequence derived from alignment at S-ischiensis_contig86:253516..258411- (Schizocladia ischiensis KU_0333)
CTGAGGGTCAGGTTGTGGGTGGAACCTTCGTCGTTGTGGGCGGCGAGCCG
CCCAAAGCCTTCCCGCCTTGAGGGCGGCCCTTCGGGCCGAGCCCGGGGGA
GACGGTCTCCACATCGGCAACGCCCGTGCATGGTTGGTGCGTGCATTCCA
GCGTTCACCGGTTCGTTGAGAGGACAAGGGCGTGGAACCCCAACTCAAGT
CGCCTGGCGCCGTCCAAGGGGCTCCATTCACACAATTGAGCCGGGAAGCA
TGCAACAGGTTATCGGTGAAAAGAAGTGCTTTGGTGCCCGAACCGGGAAC
GCTCGAGCGTTCAGGTCAAACGTTGAGCCGGGCTCTATTTTCGGGGCTTG
GGCGTGGGCTCGCCCCCCGCCCCCGCCCACCCCCTTCATTCCCAAGGCTC
GCGACACCTCCCCGCCTCAACTCTTCTCCCTGATACAAGCGGCACTGCAC
CACGATGAAGAACGTCGCGGGCCCGCTCCTGGCCCTCGCCTGCCTCTCCT
GGACCGCGTCCGCGAGCAGCGACGTCAACCCCGCGCGAAGGCTTGGCGGG
GGCAAGCACGACAAGCACCACCAAGTGTCCTGCGCGGACAAGGAGGTCAC
GGACACCTACTTCAGCGCGTGCCTCGCTCCCAATGGGAGGCTCTTCAACG
TTGCCACCGGCCTCGAGCCCAGCCAGGGCTGCGGAGGCACGGGGTGCGAA
GTGTCCTGGTCCGCGGAGGGCCCGCAGGGCCCGCGGGCCCCCCCCGGCAG
GCGCGGCGGGCAGGGTGAGCTAGCCCTGGGAGAATTGCAGTAGAAGGCTT
GTCCTTCCCCCACTTTGCTGCAACTGCGGTAGAGAAACTGCAGCAGAACA
GTAGTGCAAGTGCATAGCGGCTCAACTGCTTCCAAGCAGGCACGTGGTTT
GGTTATGGCCCTGTCGTCGCAGAGTGACATGCCCCAACCTTGCTGCAGCG
TGCGCTTACCTTCCCGCGCGTCGTGTTTGGCATCGCCGTGGCGTCCATTA
GATTTGATGTCGAGTCTGGCCAACTTAGCTGCGCCCCCCGGGGGGCACGT
GATTGTGGCAATCGCTTGTCTGCCCCCTTGCAACGAAAGGCCCTTCCTCT
TCCTCTTTTCCCCTTTCAAGGAATAGGCGTGCTCTTGTTCCTTTGGCGGT
CGCTGCACCTCGCGCCCAACTTCACACTCGTCAAAGTGAACAAGACGTAC
AGTAAATTTGGTTGCGAACCGGGCGCTCGTAACCGTTGGATTCACTGAGT
AACGTTTCTTAGCTTTGTTCAAGCATCCCTTGCTCCCGTAGCTCCCTCAC
CGACCCGCCATGCCCCGCCGGGCCCCGCCCTCCCCCCCCCCCCCTCCTCC
CTTTGCATGCCCGCCTTCCCCCCCGCCCTTCGCCACCCCGCCCTCCTTTT
GATTGCACGCCTTCCAGGGATTCCCGGGCCCGAGGGGGAGACCGGCGCCA
CCGGCGCCAGGGGCCCCGTCGGGCCGCAAGGTGGGTGGGTCATGTGCCTC
TACAGTTGCACTACAGTTGCGGCTCGAAGTGACCCACCTTGCGGCTTCCT
GTACAGTTGCATTACAGTTGCGGCTCGAAGTGACCCACCTTGCGGCTTGC
TGTACAGTTGCATTACAGCTGCATTACAGTTGGCGGCTCGAAGTGACCCA
CCTTGCGGCTTCCTGTACAGTTGCATTGCTAGTACAGTTGCTGCTCAAAG
TGACCCGCCTTGCGGCTTCCTGTACAGTTGCATTACAGTTGCGGCTCGAA
GTCGTGTACGAGTACGAGTACTTGCTGTGCGCCGAATAGATTACTAGTGC
TCCGGACCGCCTTCAAAGTACTCGTACTCGTACTACAGTAGCTGCAGAGT
ACATAGTCCTTAGCCCCCCTTCTCATCCTCCCCTCCCCTCCCCTTTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCATGGCG
TACACATTCCTCCAACCCGTGCCCTGGGCGTCCGCCGCACGTGCTGTTGG
AACCTGGGCAGGCGTTCCTGGGTCGAGCGGCCCCCATGGAACCCAGGGCG
AGCGGGGACCCCCGGGGCCGCGTGGAGCCAAGGGCGAAACGGGCCCCATG
GGTCAAAAGGGAGACGAGGGGGAGCAGGGCCCAAGGGGGGAAACGGGTCC
CATGGGCCACAAGGGCGAGAAGGGCGACATGGGAGAGCGGGGTGAGTGCT
GTACCTACCTGCCGGCCTTCCTCCCCCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCCCCCCCTCTCTCTACTTTGCTCTATCTCCCTCCGTCCCCGCCC
CCCCCTCTCTTTCTCGCTGTCGCTATCTCCGTCTCGCTTCCTATCCCTCT
CACTCGCTCTCTCTCACACCCACCCCTCTCTCTCCCCCCACCTTGCTTCC
ATCCCTCTCTCCCTGCCCCTCCCTCTGCCGCTCCCTCTCCCTCATATTGT
GCTATCTCGCTATTGTCTGATTCCTTTTCACTGCCTATCGCGCTCCCCTT
TCTCACTGCCTATCACTCTCCCCTCGTCACGCCCGGGGGCATGCCACCCC
TTGCCCCCTGCCCTTCCGTGGCACGCCCCGCTGGCCCCGTGCATCTCTTC
CTTGCCCCCCTGCCTGCTTTGATCTACCGTAATCGTCGGAGAGATTTTGC
TCCCACCTATCAATTTTCGGGGAAATATTTCTAGCTGGGAAGGTCCTGAA
TTGGCCCGAAATCCCTCGGAAAAGTTCCCCCAGGTCCTCTGAGGGAGATT
TTCCGAGTTTTCCTGCGCGAACCTGACCAGTATTCGGCGAGAAAAGTTCT
CCCGAAAATTGGCATGCGGGGGCAAGATCTCTCCGACGATGGCTCGCACT
GCACTGTGTTTACATCTGTGTGTCGCTCCTCGTCCGCCACCCATGCGGCG
CGATGCCTCCCCACGCCCCCCCCCACACCCAGCATTGATCCCCCCCCCCC
TTCCCCCCCCCTCCATGTCCTTAGTTCCTTGATATTATAGTCACTAGTAC
GAGGACACTCAATTCTTAAATGGGACAGCTACTAGCACGAGAGCAGTCAA
TCTCACACACGTGCGATTGTGCCGCGGTACAATTTATATGAATCAACACC
CTCTGGTTTCCTCTTGCTTGTACGAGTATATATATATATATGTACTCACG
TGGTGCCTGCCATAGTCCCGAGACCATTGGCCGCTCGCCTCGTTCGAGAC
GGAGCAGGACGAGTACTTGAAGTACTACTCGTGCTGCATTGTACTTCCAG
GGGACGTGCTGCAATTGGCGTCCTCTGACTGCGGGGTAGTAGTTCTTTGG
CTCACTCTCACTTCTTCCCCCCCCGCCCTTTCTTTGTCTACTTTTCGCGG
GTATTTTGCGGCCAGCTCTGACCCCCCCCCCCCTCTTCCTCGTTTGCTCT
TTGGCGTTTGTTGATTGAACTGGCCAAGTCTGGCTCTCCCGCCCTCGTTC
TCGTCCACCTGTCGGCGTTTATTTGAACGCTTTTTCTCTTTGCAGTCCCG
CCCCCCGCGGGGTCCCCCGGGCCGCCCGGGCAAAGGACAGTTTCATTTTT
TCCTTCCCCACCTGCAAGCGTGTACTTAATTGTACTTGAAAATACGAATC
AAACACTTCCAGGTATCTGGCTGACTCTGGCTCCCTTCCACTCTTTCTTT
TTTTTACAACTTTTGGCTATTTTTTGTCCCCTGTGCAGGCCCAATCAAGG
GCTTCCAGGTACTTGGCTCACTCTGGCTCCCTTCCCCTCTTTCTTTTTTC
ACTTTTGGGTATTTTTGTCCGCCTCTTTCTTTTTTAAAAAACTTTCGGGT
GTTTTTTCCCCCTCTCTTTTTTTACTTTTGGGTGTTTTTTCACCTCTTTT
CTTTATTGTTATTATTATTTTTCCCCTCTGCAGCCCCGCCCGGTCCCCCG
GGCTCCCCGGGCAGGGACGACACGGACGGCAAGGACAGCCTCCATGGGAA
GGATGGTGTCGACGGCGTTTTGGCGAACTCTGGCTCCCTTCCCCTTTTTC
CTTTCTTGCTTTTGGGTACCTTTTTCCCCCCTTTCTTTGTTTGCAGGCCC
GCCCGGTCCCCGGGCCCCCCGGGCAAAGATGGAATTGACGGCAAGGACGG
CCTCAAGGGGAAGGACGGTGTCGATGGCAAGAACGGGCTCCCGGGTAAAG
ACGGAATTGACGGCAAGAGCGGGGTGGATGGGAAGGACGGCGTCGACGGC
ATGGATGGCGTGCACGGCCGGGACGGGAAGTACGGTCCCGCCGGAGAGCA
CTGATGGAATGTCGAATATTGACCCTTTTACCCCTGCTTAGTTGGACTTA
CACACTATCCCCCTATGATTATACGGACCCCAGGGGTAAAAGGGTTAAAA
TATGTAACGACTCGGTTCGATATCGATTACTGCCGGTGAGAGTCCCACTC
CCTCTCCTCTCTACTCGAACCGTGCTACAATAAAGTGCGATTTGTTTTTG
CCCGAATTGTTTTTATCGAATATTGATTGACCTGTTTGTTGGTCAGTCCG
TGTGATGTTGTGATACGGAAGCTATACTGTAGCGCAAATGAACGTGCTTG
TCGGGCTCTTTCATTTGTAGAAATTTCGCAGCCATCCGACGCGTCCTTCG
TAGAGCGGGCCGGCCACCGGAAATAGTGATCACACTTTTGTACGAGTAGC
ATTGTTACTCCTCTCCCCTCAACTGTGGCGTCGTACAATGGCATGCCTGC
TCCATTACCTACGCTGTGCGATGGCATGGAATTTCTAATGGAATTTCTAA
TGGAATTTCTATCCCCATTTACCTGCCCTCAGCTGCGGTGTACAATGGAA
TTCCTGCTCCGTCAACTACGGTGTGTGCAATGGAGTGGAATTTCTATCCC
CTTTTTACCTGCGGAGCGCAACAGAAGTCGCCTCCCTTGTCTATGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig86:253516..258411-

>mRNA_S-ischiensis_contig86.20195.1 ID=mRNA_S-ischiensis_contig86.20195.1|Name=mRNA_S-ischiensis_contig86.20195.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2172bp|location=Sequence derived from alignment at S-ischiensis_contig86:253516..258411- (Schizocladia ischiensis KU_0333)
ATGGTTGGTGCGTGCATTCCAGCGTTCACCGGTTCGTTGAGAGGACAAGG
GCGTGGAACCCCAACTCAAGTCGCCTGGCGCCGTCCAAGGGGCTCCATTC
ACACAATTGAGCCGGGAAGCATGCAACAGGTTATCGGTGAAAAGAAGTGC
TTTGGTGCCCGAACCGGGAACGCTCGAGCGTTCAGGTCAAACGTTGAGCC
GGGCTCTATTTTCGGGGCTTGGGCGTGGGCTCGCCCCCCGCCCCCGCCCA
CCCCCTTCATTCCCAAGGCTCGCGACACCTCCCCGCCTCAACTCTTCTCC
CTGATACAAGCGGCACTGCACCACGATGAAGAACGTCGCGGGCCCGCTCC
TGGCCCTCGCCTGCCTCTCCTGGACCGCGTCCGCGAGCAGCGACGTCAAC
CCCGCGCGAAGGCTTGGCGGGGGCAAGCACGACAAGCACCACCAAGTGTC
CTGCGCGGACAAGGAGGTCACGGACACCTACTTCAGCGCGTGCCTCGCTC
CCAATGGGAGGCTCTTCAACGTTGCCACCGGCCTCGAGCCCAGCCAGGGC
TGCGGAGGCACGGGGTGCGAAGTGTCCTGGTCCGCGGAGGGCCCGCAGGG
CCCGCGGGCCCCCCCCGGCAGGCGCGGCGGGCAGGATGGTTGGTGCGTGC
ATTCCAGCGTTCACCGGTTCGTTGAGAGGACAAGGGCGTGGAACCCCAAC
TCAAGTCGCCTGGCGCCGTCCAAGGGGCTCCATTCACACAATTGAGCCGG
GAAGCATGCAACAGGTTATCGGTGAAAAGAAGTGCTTTGGTGCCCGAACC
GGGAACGCTCGAGCGTTCAGGTCAAACGTTGAGCCGGGCTCTATTTTCGG
GGCTTGGGCGTGGGCTCGCCCCCCGCCCCCGCCCACCCCCTTCATTCCCA
AGGCTCGCGACACCTCCCCGCCTCAACTCTTCTCCCTGATACAAGCGGCA
CTGCACCACGATGAAGAACGTCGCGGGCCCGCTCCTGGCCCTCGCCTGCC
TCTCCTGGACCGCGTCCGCGAGCAGCGACGTCAACCCCGCGCGAAGGCTT
GGCGGGGGCAAGCACGACAAGCACCACCAAGTGTCCTGCGCGGACAAGGA
GGTCACGGACACCTACTTCAGCGCGTGCCTCGCTCCCAATGGGAGGCTCT
TCAACGTTGCCACCGGCCTCGAGCCCAGCCAGGGCTGCGGAGGCACGGGG
TGCGAAGTGTCCTGGTCCGCGGAGGGCCCGCAGGGCCCGCGGGCCCCCCC
CGGCAGGCGCGGCGGGCAGGGGATTCCCGGGCCCGAGGGGGAGACCGGCG
CCACCGGCGCCAGGGGCCCCGTCGGGCCGCAAGGGATTCCCGGGCCCGAG
GGGGAGACCGGCGCCACCGGCGCCAGGGGCCCCGTCGGGCCGCAAGGCGT
TCCTGGGTCGAGCGGCCCCCATGGAACCCAGGGCGAGCGGGGACCCCCGG
GGCCGCGTGGAGCCAAGGGCGAAACGGGCCCCATGGGTCAAAAGGGAGAC
GAGGGGGAGCAGGGCCCAAGGGGGGAAACGGGTCCCATGGGCCACAAGGG
CGAGAAGGGCGACATGGGAGAGCGGGGCGTTCCTGGGTCGAGCGGCCCCC
ATGGAACCCAGGGCGAGCGGGGACCCCCGGGGCCGCGTGGAGCCAAGGGC
GAAACGGGCCCCATGGGTCAAAAGGGAGACGAGGGGGAGCAGGGCCCAAG
GGGGGAAACGGGTCCCATGGGCCACAAGGGCGAGAAGGGCGACATGGGAG
AGCGGGGCCCGCCCGGTCCCCGGGCCCCCCGGGCAAAGATGGAATTGACG
GCAAGGACGGCCTCAAGGGGAAGGACGGTGTCGATGGCAAGAACGGGCTC
CCGGGTAAAGACGGAATTGACGGCAAGAGCGGGGTGGATGGGAAGGACGG
CGTCGACGGCATGGATGGCGTGCACGGCCGGGACGGGAAGTACGGTCCCG
CCGGAGAGCACTGAGCCCGCCCGGTCCCCGGGCCCCCCGGGCAAAGATGG
AATTGACGGCAAGGACGGCCTCAAGGGGAAGGACGGTGTCGATGGCAAGA
ACGGGCTCCCGGGTAAAGACGGAATTGACGGCAAGAGCGGGGTGGATGGG
AAGGACGGCGTCGACGGCATGGATGGCGTGCACGGCCGGGACGGGAAGTA
CGGTCCCGCCGGAGAGCACTGA
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