mRNA_S-ischiensis_contig86.20194.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig86.20194.1
Unique NamemRNA_S-ischiensis_contig86.20194.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig86.20194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig86contigS-ischiensis_contig86:234178..234608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size431
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817346.5320761-UTR-S-ischiensis_contig86:234177..2342961622817346.5320761-UTR-S-ischiensis_contig86:234177..234296Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 234178..234296 +
1695741044.9385843-UTR-S-ischiensis_contig86:234177..2342961695741044.9385843-UTR-S-ischiensis_contig86:234177..234296Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 234178..234296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817346.5448778-CDS-S-ischiensis_contig86:234296..2346081622817346.5448778-CDS-S-ischiensis_contig86:234296..234608Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 234297..234608 +
1695741044.9530532-CDS-S-ischiensis_contig86:234296..2346081695741044.9530532-CDS-S-ischiensis_contig86:234296..234608Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 234297..234608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig86.20194.1prot_S-ischiensis_contig86.20194.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig86 234297..234608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig86.20194.1

>prot_S-ischiensis_contig86.20194.1 ID=prot_S-ischiensis_contig86.20194.1|Name=mRNA_S-ischiensis_contig86.20194.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=104bp
MNRNNTGRGAGHVTRDLNSGPSLARQGRFVWGRGEGGGGRGGGGEGRGGR
KRSALSVTWALSFYSCVCVCFCVERKEANGKWSLSEPRGPGRLPLEPLPA
SARG
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mRNA from alignment at S-ischiensis_contig86:234178..234608+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig86.20194.1 ID=mRNA_S-ischiensis_contig86.20194.1|Name=mRNA_S-ischiensis_contig86.20194.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=431bp|location=Sequence derived from alignment at S-ischiensis_contig86:234178..234608+ (Schizocladia ischiensis KU_0333)
CGGGTCCAAGTGTTCCGGCACCGTGGGGACCTGGCTGTCTACCTATGGAA
CCGCTCCCTGCTTCCGCCCGCAGCGGGGGGTGGGGCACAACCACAGGTGC
GTAGTACTTCGAAGTAAGTATGAACAGGAACAACACCGGGCGAGGTGCAG
GCCACGTCACTAGAGACCTCAACAGTGGCCCTTCCCTAGCTCGCCAGGGG
AGGTTTGTGTGGGGAAGGGGAGAAGGAGGAGGAGGACGGGGAGGAGGAGG
AGAAGGAAGGGGGGGGAGGAAGAGGAGTGCGCTGTCCGTAACTTGGGCCC
TGTCTTTTTACTCTTGTGTGTGTGTGTGTTTTTGTGTGGAAAGAAAAGAA
GCGAATGGAAAATGGAGTCTTTCGGAACCGCGGGGACCTGGCCGTCTGCC
TCTGGAACCGCTCCCTGCTTCCGCCCGCGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig86:234178..234608+

>mRNA_S-ischiensis_contig86.20194.1 ID=mRNA_S-ischiensis_contig86.20194.1|Name=mRNA_S-ischiensis_contig86.20194.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=624bp|location=Sequence derived from alignment at S-ischiensis_contig86:234178..234608+ (Schizocladia ischiensis KU_0333)
ATGAACAGGAACAACACCGGGCGAGGTGCAGGCCACGTCACTAGAGACCT
CAACAGTGGCCCTTCCCTAGCTCGCCAGGGGAGGTTTGTGTGGGGAAGGG
GAGAAGGAGGAGGAGGACGGGGAGGAGGAGGAGAAGGAAGGGGGGGGAGG
AAGAGGAGTGCGCTGTCCGTAACTTGGGCCCTGTCTTTTTACTCTTGTGT
GTGTGTGTGTTTTTGTGTGGAAAGAAAAGAAGCGAATGGAAAATGGAGTC
TTTCGGAACCGCGGGGACCTGGCCGTCTGCCTCTGGAACCGCTCCCTGCT
TCCGCCCGCGGCATGAACAGGAACAACACCGGGCGAGGTGCAGGCCACGT
CACTAGAGACCTCAACAGTGGCCCTTCCCTAGCTCGCCAGGGGAGGTTTG
TGTGGGGAAGGGGAGAAGGAGGAGGAGGACGGGGAGGAGGAGGAGAAGGA
AGGGGGGGGAGGAAGAGGAGTGCGCTGTCCGTAACTTGGGCCCTGTCTTT
TTACTCTTGTGTGTGTGTGTGTTTTTGTGTGGAAAGAAAAGAAGCGAATG
GAAAATGGAGTCTTTCGGAACCGCGGGGACCTGGCCGTCTGCCTCTGGAA
CCGCTCCCTGCTTCCGCCCGCGGC
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