mRNA_S-ischiensis_contig86.20192.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig86.20192.1
Unique NamemRNA_S-ischiensis_contig86.20192.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig86.20192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig86contigS-ischiensis_contig86:170149..173264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size360
Cds size216
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig86.20192.1prot_S-ischiensis_contig86.20192.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig86 170293..173264 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.8889465-UTR-S-ischiensis_contig86:170148..1702921622817345.8889465-UTR-S-ischiensis_contig86:170148..170292Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 170149..170292 +
1695741044.462414-UTR-S-ischiensis_contig86:170148..1702921695741044.462414-UTR-S-ischiensis_contig86:170148..170292Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 170149..170292 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.900717-CDS-S-ischiensis_contig86:170292..1704691622817345.900717-CDS-S-ischiensis_contig86:170292..170469Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 170293..170469 +
1695741044.471774-CDS-S-ischiensis_contig86:170292..1704691695741044.471774-CDS-S-ischiensis_contig86:170292..170469Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 170293..170469 +
1622817345.912923-CDS-S-ischiensis_contig86:173225..1732641622817345.912923-CDS-S-ischiensis_contig86:173225..173264Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 173226..173264 +
1695741044.4815462-CDS-S-ischiensis_contig86:173225..1732641695741044.4815462-CDS-S-ischiensis_contig86:173225..173264Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 173226..173264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig86.20192.1

>prot_S-ischiensis_contig86.20192.1 ID=prot_S-ischiensis_contig86.20192.1|Name=mRNA_S-ischiensis_contig86.20192.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=72bp
MAIMSTSLLLLVHVMLVRALVPPPAIRSGYAGRSLLIPREGLVRGALQPP
LSSPTSRQQGTCHRGDRRVGQL
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mRNA from alignment at S-ischiensis_contig86:170149..173264+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig86.20192.1 ID=mRNA_S-ischiensis_contig86.20192.1|Name=mRNA_S-ischiensis_contig86.20192.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3116bp|location=Sequence derived from alignment at S-ischiensis_contig86:170149..173264+ (Schizocladia ischiensis KU_0333)
AGACAGCAATCGAGGGGCATTGCCGTGCTCTGAACTTCGCTTCCCAGGAA
CCTTTGTTCCTTCTCGTCTGCTCCGAGTGGCCCCGAGGGGACACAGCCTG
GCTTTCTTACTGACTCTCTGATCGGGGGCGCCTCCGGCGCAACCATGGCG
ATCATGAGCACTTCGCTGCTGTTGCTGGTGCATGTCATGCTCGTGCGTGC
GTTGGTGCCTCCGCCGGCCATTCGCAGCGGGTACGCTGGCCGTTCGCTGT
TGATTCCGAGGGAGGGGCTTGTGAGGGGGGCGCTGCAGCCCCCCCTGAGC
TCGCCGACGTCCAGGCAACAGGTGAAACTGTACAAATTGTTTGCAAATTG
TTGCAAATTGTACTGCACATGAGTTGATAGCGCCCAGTAAGCCGAGGGAG
GCTTACTTAATCAAGTGCGCGGTCTATGATCACGTGCAGCACTTCCAAAG
CCGAGGACATGTTGGACCTTTTTTGCCACCTGAGCGAGCATGTACGCCTC
CAGTGCTAGTGTGTCGGAGCAATAGAGCCAGTTGGAGCTACGATTCATAC
GTACCTGTAGTATAAATTGTAGCGAGGCAAAATCGCACGTGTGTGCGATT
GACTGTTCTCGTATTAGTAGTTGTTTCATTTGAATGTTCTTGTATTAGTG
AATATCACATCAAGGAACTAAAACCAAGGCGGGGCGGGGGAGGAGGGGGG
GCTAGCAGTTCGAGCTAGTTCGGATGGACGAGCCGGCGCAGTTTCTGAGT
GCCAGCGCAGCTGCAGACTATGTAAGTAGATTTAGCGGTAGCACCCTGCA
ACTGCACTGCGCGCAGTGCTGTGGCACGAATTACAACACGTGAACCAAGG
GCACAGCACACTTTCAGTAGTGTTGGAAGTGCTTCGATCTACAAGCGACT
CCTCCAGGGACTTGCCAGTACTGTGTACTTGTACTCGAGTACTCATTTCC
AAGTACTTCGTTACTACGTATGGTACAGTAGTACTGCATATGTATGTATG
TGTACTCACGCTGTGGCACGAATTACAATGCGGCAACAAGGGCACAGCGC
ACTTGCAGTAGTGTTGGAAATGCTTCAAAGTACTCTACACGCAAGTACTG
CAGTGTTGTACTTCGAAGTGCTCTGCAAGTAATGTAGTGTTGTACTTCGA
AGCACTCCACAAGTAAATAAGTACTGTAGTGTTGTACTTCGAAGCACCCC
ACAAGCAAGTAAGTACTGTAGTGTTGTACTTCGAAGCACCCCACAAGTAA
GTACTGTAGTGTTGTACTTCGAAGCACCCCACAAGTAAGTAAGTACTGTA
ATGTTGTACTTCGAAGCACCCCACAAGTAAGTACTGTAGTGTTGTACTTC
GAAGTACTCTACAAGTAAGTACTCTCAGGGACTTGCCAGTACTATGTGTA
CTTGCACTCATTTCCAAGTACATTACTAGAGCTCTACGTATGGTGGCACT
GCATATACATACATATGTGTGTGTACTCACGCTGTACTTGCCGTATTCCC
GAGACCGTTGACCCCTATGGCCCGTCAACCGAGACGGAGCAAGCCCCTCG
TGACAGTGTGCACTCACATCTCTGTGCATGCCCTGGACCCGAACGATCCT
CGTCTTTGCTCGATCTTGGGGATCGCTGGCCAGCTGTAGTTTTCGCCATG
ATAGTAAGTACGAAGTACTTTATACTTCGTATATGCTGTATGTAATACTC
GAGTATGCATCTATGCTTCGAAGTATGGATGTGTGTGTGTGTGTACTCAC
GCTGTGCTTGCCGTATCCCCAAGACCATTGACCACACTCCCTTGACGGCG
GAGATACATGCAATGTGAAACTGCCACAGTACAGCGAGGTACTTCGAAGT
ATTACACGTGAGTACATATATGTATATATATTAGGGCAAGCCTCGTCTCC
CACCACGCCACATTCGTGCATCGCTGGCGACTACGGGCACACGGCTGCCT
GCCGTATTGCCAAAGTACTGTACAGGTACTGTACGGACTACAGTCAAACT
GTACATGTACTGACAGGCTATAGTCAAACCACTGTGCACATACAGTACTG
GCAGGCTATAGTCAGACTACTGTACAAGTACTGTACAGACTATAGTCAAA
CTGTACACATACTGGCAGACTATAGTCAAACTGCTGTAGAGCACTGCACA
GACTACAAACTGTACAGTACAATTACTGTACAGACTATAGTCAACTGTAC
TTGCGCCCGTCCGGTGAAAACCCGGGATGCTCCGGCCCGGTGTTGTAGGG
CCGCGTGGCCAATGACCGCAAGGCTACCCCCTATGGGGACCGACCTGGGT
CAGCACGGAGTATACTGGCTCGGGTCGGTGGCAACCACAGGGTGGGATCC
CCATCCGCCATGAGTACACGCAAGTGTTGTACAGACTATAGCCAAACTAC
ACGTACTGTACAGACTACTTATAGTCGAACTGTACAAGTGCTGTAGGAGT
ACAGGCTACAGTCAAACTATGTGCACGTGCTGTACAGTACAGTCGAACTG
TACACGCACTATACAGACAAACAACAGGCAAACGACACAAGTACTGTACA
GACTACAGTAGAGCTCTAAAGAATGTATACGTGCACTGTACAGACAAACA
ACAGTCAAATGACACAAGTACTGTACAGACTACAGTAGAGCTCTTAAAGA
ATGTATACGTACTGTGCAGACTACAGCCAGCAAGCTACTGTACAAGTACT
GTACTGAGTATCATGAAACTACTGTACAAGTTCTGTACAGACTGTACTCG
TACAAGTACTCTAAACTGTGCTTGTGTGGCCGACAGTGCCCCCTCCTGCA
CACTGCATGCGGTGACTGAAAACGTCTCATACCCCCCACACTACCTCCTC
CTCCTCCTCCTCCTCCCCGCCCACCTCCCCCTCCTCCTCTTCCCCCCGTG
CCCACACAAATTTCCCCTGGCGAGCTATAAGGGAGGGCCACTGCTGAGGC
CTCTAGTGACTTGGCCCACACCTCGCCCCGTGTGTTTTTCCTGTTAATAC
TGCATGCGGGGACTGAAAAACGTCTCATACCCCCCACACTACTGCATGTG
CTCCCGCCTATTGCTCGTATTGCCCAGGGGACGTGCCACCGCGGCGACCG
TCGAGTTGGGCAGCTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig86:170149..173264+

>mRNA_S-ischiensis_contig86.20192.1 ID=mRNA_S-ischiensis_contig86.20192.1|Name=mRNA_S-ischiensis_contig86.20192.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=432bp|location=Sequence derived from alignment at S-ischiensis_contig86:170149..173264+ (Schizocladia ischiensis KU_0333)
ATGGCGATCATGAGCACTTCGCTGCTGTTGCTGGTGCATGTCATGCTCGT
GCGTGCGTTGGTGCCTCCGCCGGCCATTCGCAGCGGGTACGCTGGCCGTT
CGCTGTTGATTCCGAGGGAGGGGCTTGTGAGGGGGGCGCTGCAGCCCCCC
CTGAGCTCGCCGACGTCCAGGCAACAGATGGCGATCATGAGCACTTCGCT
GCTGTTGCTGGTGCATGTCATGCTCGTGCGTGCGTTGGTGCCTCCGCCGG
CCATTCGCAGCGGGTACGCTGGCCGTTCGCTGTTGATTCCGAGGGAGGGG
CTTGTGAGGGGGGCGCTGCAGCCCCCCCTGAGCTCGCCGACGTCCAGGCA
ACAGGGGACGTGCCACCGCGGCGACCGTCGAGTTGGGCAGCTGGGGACGT
GCCACCGCGGCGACCGTCGAGTTGGGCAGCTG
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