mRNA_S-ischiensis_contig86.20187.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig86.20187.1
Unique NamemRNA_S-ischiensis_contig86.20187.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig86.20187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig86contigS-ischiensis_contig86:113050..118797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size724
Cds size519
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig86.20187.1prot_S-ischiensis_contig86.20187.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig86 114135..118797 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.591979-UTR-S-ischiensis_contig86:113049..1132281622817345.591979-UTR-S-ischiensis_contig86:113049..113228Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 113050..113228 +
1695741044.2751946-UTR-S-ischiensis_contig86:113049..1132281695741044.2751946-UTR-S-ischiensis_contig86:113049..113228Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 113050..113228 +
1622817345.6068573-UTR-S-ischiensis_contig86:114110..1141341622817345.6068573-UTR-S-ischiensis_contig86:114110..114134Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 114111..114134 +
1695741044.2865634-UTR-S-ischiensis_contig86:114110..1141341695741044.2865634-UTR-S-ischiensis_contig86:114110..114134Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 114111..114134 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.62175-CDS-S-ischiensis_contig86:114134..1143251622817345.62175-CDS-S-ischiensis_contig86:114134..114325Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 114135..114325 +
1695741044.2958064-CDS-S-ischiensis_contig86:114134..1143251695741044.2958064-CDS-S-ischiensis_contig86:114134..114325Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 114135..114325 +
1622817345.6363573-CDS-S-ischiensis_contig86:116094..1161721622817345.6363573-CDS-S-ischiensis_contig86:116094..116172Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 116095..116172 +
1695741044.3064647-CDS-S-ischiensis_contig86:116094..1161721695741044.3064647-CDS-S-ischiensis_contig86:116094..116172Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 116095..116172 +
1622817345.6513412-CDS-S-ischiensis_contig86:117192..1173441622817345.6513412-CDS-S-ischiensis_contig86:117192..117344Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 117193..117344 +
1695741044.317716-CDS-S-ischiensis_contig86:117192..1173441695741044.317716-CDS-S-ischiensis_contig86:117192..117344Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 117193..117344 +
1622817345.6703029-CDS-S-ischiensis_contig86:118699..1187971622817345.6703029-CDS-S-ischiensis_contig86:118699..118797Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 118700..118797 +
1695741044.333707-CDS-S-ischiensis_contig86:118699..1187971695741044.333707-CDS-S-ischiensis_contig86:118699..118797Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 118700..118797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig86.20187.1

>prot_S-ischiensis_contig86.20187.1 ID=prot_S-ischiensis_contig86.20187.1|Name=mRNA_S-ischiensis_contig86.20187.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=173bp
MAEAAAARPAGMGRVRGGGGGGGGGVDLSLLILAGALAETIRSAYVPRLW
KWEGLDVVALNGLGCLLAGLSQGVTVHNSPAPAQQGRYSRTREGSHHRHH
HHHHHCTQQVDAERDGAGTAGDGAPASSGGNGRDDEGDALGHRSRYGGIP
THPHAHAHHGGGGDKDATSHVQK
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mRNA from alignment at S-ischiensis_contig86:113050..118797+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig86.20187.1 ID=mRNA_S-ischiensis_contig86.20187.1|Name=mRNA_S-ischiensis_contig86.20187.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5748bp|location=Sequence derived from alignment at S-ischiensis_contig86:113050..118797+ (Schizocladia ischiensis KU_0333)
GAGAATCTTACGACAGCGTGTTCTGCAGACAACGACGCTTCCCGAGTAGG
TCATCTTGATGTACGGGTAATTGGGGTTTCGCCCCGGCGACCCCCCACCC
CCGGACCGGCGGTATCAGTGGCCAGTGCCGTTCACGAGGAGCACAACCAG
GCTTTCCCCGCACTTGCCGTGCCCGGCTGGTAAGTGTGGCTGCAGCGCGG
ACTGCTGAAACGGTGCCGCTGCCCTCTCCGATTGTGTATTCAATGCCCAA
GCGACAATAGTTTTAAATTGCGAGTATCCCTTGTACTTGTAGTTCGAAAT
GGCAGTATTGCCGCAGCTGCTGCAGCATTTCGGCACCAGCGCAGCTGGAA
CAACATCGCACTATACAGCGGCGGCGACGGCGGCGGCAAGTGCAGCAGAA
GTATTGGTGCAGTATCGCGGCATCCCAGCAACGTACAGGCAGTAGACCGT
CCACACTGTTCCTACAAGGCAGTTCGAAGTGTACAAGGATATGAGGCGTG
CGTTAGTGGTCTTGGGACTGCCACAAGCGCAACGTGAGTAGCTCTACTGC
TGTACAGTACTTCCGGCTGTCTATATGTACAGTACATGCACAGGTTTGAG
TTTGACAGACACCGAAGCCAGCGAGCTCGTGCTTGAAATGAATGATCCAG
CGCACGGGGGGGTGTTCTTCATCACGGAAAAGGTAGAGATGTCTCTGTCC
TCGCCGAGATTGCATGTACAGTAAGTAGTGGTCCCAGGGCTAAGGACTGT
GCAGGAAGGTGTGTACACCTGCCCTGTCACGCACACGCAATGTACCTTAG
GGGAAGTGGAACATCGAACCCCTTCGGGACAACCGGCGGGCAATTTCTTT
CTCGCCGGATCGGGTTTCGATCGAATCGGAAACCCTCGGAATGCATCAGT
CTCGACCAAAGGCTTTCGTTCGTTCCGAGGATTTTCGATTCGATCGAGAA
CCGATCCGGCGAGAAACAAGTGCCCGGCGGTTGCCCCGAAGGGGTTCGAT
ATTCCACTTCCCCTGCGGTACTTACAGAGTAGCTGTGTTCCCTCATCCCC
CGCTGCCCCAGGTCGGTGCTAAGTAAGCCTACACCATGGCTGAGGCTGCA
GCCGCTAGGCCAGCAGGCATGGGGCGGGTTCGTGGTGGCGGCGGTGGCGG
TGGGGGGGGCGTTGACTTGTCCCTCCTGATACTGGCAGGGGCGCTTGCGG
AAACTATACGGAGCGCGTACGTCCCACGGCTATGGAAGTGGGAGGGGCTG
GATGTGGTGGCGCTGAACGGCCTAGGGTGAGAGACGGCGGAGGGAGGGAG
GAAGGGATTGACAGAGTGTGGTGGCGCTGAATGGCCTAGGGTGGGAGGCG
GCGGAGGGAGGGAGGGAGGGATGGAGTGTGGTGGCATTGAATGGCCTAGG
GTGAGAGGCGGCGGAGGGAGGGAGGGATGGACCGAATGTGGTGGCGCTGA
ATGGCCTAGGGTGAGAGGCGGCGGAGGGAGGGAGGGATGGACAGAGTGTG
GTGGCACTGAATGGCCTAGGGTGAGAGGCGGCGGAGGGAGGGAGGGAGGG
ATGGACAGAGAGACGGAGACGGAGACGAGGGAGGGAGGAACGCAGGGAGA
GAGATAGGGGAGGGGGGGGGGCGGGCAGGGAGTCGCCCGCAGTTGTTATT
TCCGAGGGACCATTAGCTGTGTCTTTCGACGTAGCCGGGGTGTACTGGAG
TACTTGGAAGTACAGTACATGTTGGACCTCCGGAAGACTGGTGTCGCCCG
TCACCATCCTTCAGGTGGGAAGTACTTCGAAGTACCCACAGTGCTGAGCC
ATTGGCCCTCATAACTCGCATCCCGACTAGGCCAGGATATGTATATTAAT
ATGCGAGTATATATGTACTCACGTGGTGCTTGCCGTAGTCCCGATACCAT
TGACCACGCGCCTCGGTCGAGACTATGTATAATGTACGAGTACTCTGTCA
ATACATGCTTGGTGCTTGAAGCGTCAGATTTTGAGTGGTAGATAAGAGGC
GAGTTCCAGGCCCCGTGCCAAAATGCTCGTCCCGAAACGGGACTCAATGA
AGCCCTTCTTCCCCTCGCAGGGCAAAAAGAAGCGTCCTATATACTACGTA
CAATAGTGATGGGTATGTGCAGAACCCCTTTGTCACTTTTGGCCTGTCCT
GTCCCGTATGTGGACCGGACCTGGCTGTCGGCAGTGGTGGAATATCGAAC
ACTTCGAAGTATTAAAACATAGTTCGAAGTATATACCAAAACGTTGTATC
GAATAGATATAATGATCGCCGCATATATCGACGTTATATCGACTGATGTA
TTCCGATGAATAGCTTTTGAGCGTCGGCGATGACCTGGGCAAACGCCTCC
CGTGGAAGAAATTACTTGGTTCTAGTATAACAAATCGGGTGGATATTCCA
TCACTTGCTGTCGGTACGCTTAGAAGCGGCCAATGTCTCCTCACGCTGAC
AAGTCAATCTCTCCCATGAAGTAGGCACTCCCAAATACGTTCAAGCGCCA
AGGACTTCCAAGTACTGTACAGTACAGTAGTTGCCAACAATGAAGGTGAC
GACTACTGTAGTTGCCAACAATGACGGTGACGGCACCCCTTGTGGGACGC
GATGGATGGCGTGCACATTCCGATATCCGATAACTCGGGAGCGATAGGTT
CGACAATAGCTCGCGATAGCAGCGGCGATCGTCAAAACCTATCTTATTTA
CTAGTAACAATGATGGTGGTGACGGCACCCCTTGGGGGACGCGATGGATG
GTATGCGCATTCCCCTCCGCATAACTTAGCCTCCTACAAGCACGCCGCAG
TACGGCACTGAATGATTCTCCGCTGTACAATATCGCCCCGTCTTTCTTGT
TTGCGTGCCCTATCGTGCTTTGAGTACTTGGAAGTATCACTAGTAATAAC
ATGCAATTCTTAAAAGAAACAAGTACTAATACGAGAACAGTCAATCGCGC
ACACGTGCGATTGTACCTCGATACAATTTAGATGAATCACCGTGCACACG
CATGTCACTCATGCTGCCGCCTGCACCTGAAATGTCACAACGCAGGTGCC
TGCTGGCCGGGCTGTCCCAGGGGGTCACCGTGCACAACAGCCCCGCTCCC
GCGCAACAGGGCCGCTACTCAAGGTGTGGCGCTGCCAAATGCTGTCCAAG
TACTACTGTAGTGTAGTACTTCCAAATACTTCCGGAAGGGGGAATTACTG
GGAATTACTTGGAAGTACTTACATCGCTGAGACACCGTACTGCTGTACAC
TGCGGTAGCTTTACGGTACAGGCCGTTACTCAAGGTGCAGTGCTGCCAAA
TGCTGCCCACGTACTACTGTCCTGCAGTACTTCCAAATACTTCCAGAAGG
GGGAATTACATTGAAGTACTTGGAAGTGCCTACATCGCTGAGACACTGTA
CTACACTGCGGTAGCTTTACGGTACAGGGCCGTTACTCAAGGTGCGGTGC
TGCCAAATACTGTCCACGTACTACTGTAGTACTTCCGAATACTTCCAAAA
GGGGGAAGTACTTGGAAGTACTTACTGTACATTGCTGAATACACTGCGGT
AGCTGTACGGTACTGCTGGAAGTGCTTGGAAGTACTAGCAAACGGTTGTG
TACTTGCAGGGGGCAATGACAAGGATTGCGCAGCATGAGCACAGTATAGT
ATAGGTGACTTGTGAGTACAGTATGGTATAGGTGACTTGGCGGCCGAGGA
GTTATCCGCTCCGTTTTTATTTAACCGTCATATGTATACTACCTACTTGC
CCCCTGGGTGCACACCCGCACCCCCCCCCGTTCCTCTCCCTCCTCTCCCG
TCCTCCTCCTCCTCCTCTTCCTCCTTCTCCCCCTCCTCCCTGCCCACTTC
CCCCCCTCCTCTTCTCCCTTTCCCCGCACAAGTTTCCGCTGGCGCGCTAA
GGAAGGGCCACTGCTGAGGTCTCTAGTGACGTGGCCCGCACCTCGCCCCG
CGTTGTTCCTATTTATCGACCTATTTATCGACAGTACCGATCTATATATC
TATCGATAGTCGATATTCGATAGTTTGACCCACGCTAAATCCAAGTACTT
CGACGTACTCGATGTAGTTAGTAGTGCCACCCACAAAATCACACTAGCTC
TATAACTATCTACTGATCAATATGCCATCACTGGCATCTACAGGACCCGA
GAGGGAAGTCATCATCGCCATCACCATCATCATCACCATTGCACACAACA
GGTGGATGCAGAGAGAGACGGTGCGGGCACTGCAGGGGACGGTGCCCCTG
CCTCTAGCGGGGGGAATGGCCGTGATGACGAAGGCGATGCACTTGGTCAG
TACTAGTAGTACTCTACCGGCCTAATTGGGATGCGAGAGTCCATGGCAAA
ATAGCTACTTCTATCGTAGGGCAAACCCGAAGTTTCGACTTAGGGCTGTC
GGCATTGCACGCAAGGTTGTGTCGCAAGACAAGCCAATGAGTACTTGTAC
ACACACATATATATATACAGTACTTTGAAGTACAACACTATGTGGTAGAG
TAGAGAGACACAATTGTAGCGCCGTAATCGTCGGAGAGATCTTGCCCCCC
CCATACGCCAATATCCAGGAGAACTTTGCTCACCGAATACTGGTCGGATT
CGCGCCTGGAGGAAACTCAGAAAGAAATCTCCTCCCTCAGGACCTGGGGG
AACTTTTTCGGAGAGTTTTCGGGGCAATTCAGGACCTTCTTCCCGGCCAG
AAATATTCCCCCGACAATTGGCCCGTGGGGGCGGAATCTCTCCGACGACT
ACGGTACTGTGGTGTAGCTGAGCACATTCCCCCAGAGGCGGCCGGCAGTC
GCGGCCGCTGGGGACTTGGCCCCGCGACACACGACCGACACAGCCATGCA
GTTGTACCGCAATCGCCGGAGAGAATTTGCCCTCACGGGCCAATTTTCGG
GGGAGTATTTCTAACCGGGAAGGTCCTGAATTGTCCCGAAACCCCCTGGA
AAAGTTCCCCCAGGTCCTGATTGAGATTTTCCGAGTTTTCCTGCACACAT
CCAACCAGTGTTCGGAGAGAAAAGTTCTCCCAAAAATTGGCATGGGCGGC
CAAGATCTCTCCCACGATTACCGTAGCCAGAGTAACTCCAACCGGCCTCA
GGCTGGGCCTGCCCCCCCCCCGACGGAGCCCGGCTATGCACTGTACTATG
TACGCGTAGTAGCACTGGTCAACGGTCTCGGGACTACGGCAAGCACAGCG
TGAGCACATATATACTTCGAAGTATACATCTATGCCATGTACTATGTACT
AGGACTGGTCAATGGTCTCAGGACTACGGCAGGCACAACGTGAGTACACA
CACACACATATATATACATCGAAGAATATGTATAGTCACGTTGTGCTTGC
CATGGTCCCGAGACCATTGACCCCGCGCCTCGGTATATATATATGTACTT
CGAATTATCCTGTAGGCACGTGTGTCGAGTACCTTGCTGTAGGGACCTGA
AATGCTTTGGTGCACCAGTCAGTCATGGGCGACGCGTTACTTGCTGCCAC
AAAGCTAGCCACTGCAGTAGTAACCAGGGTACGTCGTTGACAGATGAAAC
CACCACCAGCACCAGCACCACCACCACCACCACCCCCAACACCACCACAT
CAACACCAGGATGTCACAGCGCCTCTAAATTACTTCACAACGCACGACAG
GTCACAGATCCCGCTATGGCGGGATCCCCACCCACCCTCATGCTCACGCC
CATCACGGTGGAGGAGGCGACAAGGACGCCACGAGCCACGTGCAGAAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig86:113050..118797+

>mRNA_S-ischiensis_contig86.20187.1 ID=mRNA_S-ischiensis_contig86.20187.1|Name=mRNA_S-ischiensis_contig86.20187.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1038bp|location=Sequence derived from alignment at S-ischiensis_contig86:113050..118797+ (Schizocladia ischiensis KU_0333)
ATGGCTGAGGCTGCAGCCGCTAGGCCAGCAGGCATGGGGCGGGTTCGTGG
TGGCGGCGGTGGCGGTGGGGGGGGCGTTGACTTGTCCCTCCTGATACTGG
CAGGGGCGCTTGCGGAAACTATACGGAGCGCGTACGTCCCACGGCTATGG
AAGTGGGAGGGGCTGGATGTGGTGGCGCTGAACGGCCTAGGATGGCTGAG
GCTGCAGCCGCTAGGCCAGCAGGCATGGGGCGGGTTCGTGGTGGCGGCGG
TGGCGGTGGGGGGGGCGTTGACTTGTCCCTCCTGATACTGGCAGGGGCGC
TTGCGGAAACTATACGGAGCGCGTACGTCCCACGGCTATGGAAGTGGGAG
GGGCTGGATGTGGTGGCGCTGAACGGCCTAGGGTGCCTGCTGGCCGGGCT
GTCCCAGGGGGTCACCGTGCACAACAGCCCCGCTCCCGCGCAACAGGGCC
GCTACTCAAGGTGCCTGCTGGCCGGGCTGTCCCAGGGGGTCACCGTGCAC
AACAGCCCCGCTCCCGCGCAACAGGGCCGCTACTCAAGGACCCGAGAGGG
AAGTCATCATCGCCATCACCATCATCATCACCATTGCACACAACAGGTGG
ATGCAGAGAGAGACGGTGCGGGCACTGCAGGGGACGGTGCCCCTGCCTCT
AGCGGGGGGAATGGCCGTGATGACGAAGGCGATGCACTTGGACCCGAGAG
GGAAGTCATCATCGCCATCACCATCATCATCACCATTGCACACAACAGGT
GGATGCAGAGAGAGACGGTGCGGGCACTGCAGGGGACGGTGCCCCTGCCT
CTAGCGGGGGGAATGGCCGTGATGACGAAGGCGATGCACTTGGTCACAGA
TCCCGCTATGGCGGGATCCCCACCCACCCTCATGCTCACGCCCATCACGG
TGGAGGAGGCGACAAGGACGCCACGAGCCACGTGCAGAAAGTCACAGATC
CCGCTATGGCGGGATCCCCACCCACCCTCATGCTCACGCCCATCACGGTG
GAGGAGGCGACAAGGACGCCACGAGCCACGTGCAGAAA
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