mRNA_S-ischiensis_contig86.20182.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig86.20182.1
Unique NamemRNA_S-ischiensis_contig86.20182.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig86.20182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig86contigS-ischiensis_contig86:92217..94087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size933
Cds size816
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig86.20182.1prot_S-ischiensis_contig86.20182.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig86 92217..93972 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.2505531-CDS-S-ischiensis_contig86:92216..924001622817345.2505531-CDS-S-ischiensis_contig86:92216..92400Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 92217..92400 -
1695741044.057367-CDS-S-ischiensis_contig86:92216..924001695741044.057367-CDS-S-ischiensis_contig86:92216..92400Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 92217..92400 -
1622817345.2624116-CDS-S-ischiensis_contig86:92594..928941622817345.2624116-CDS-S-ischiensis_contig86:92594..92894Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 92595..92894 -
1695741044.0681617-CDS-S-ischiensis_contig86:92594..928941695741044.0681617-CDS-S-ischiensis_contig86:92594..92894Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 92595..92894 -
1622817345.274129-CDS-S-ischiensis_contig86:93460..936891622817345.274129-CDS-S-ischiensis_contig86:93460..93689Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 93461..93689 -
1695741044.0778708-CDS-S-ischiensis_contig86:93460..936891695741044.0778708-CDS-S-ischiensis_contig86:93460..93689Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 93461..93689 -
1622817345.2856483-CDS-S-ischiensis_contig86:93869..939721622817345.2856483-CDS-S-ischiensis_contig86:93869..93972Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 93870..93972 -
1695741044.0880954-CDS-S-ischiensis_contig86:93869..939721695741044.0880954-CDS-S-ischiensis_contig86:93869..93972Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 93870..93972 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.2970068-UTR-S-ischiensis_contig86:93972..940871622817345.2970068-UTR-S-ischiensis_contig86:93972..94087Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 93973..94087 -
1695741044.1029403-UTR-S-ischiensis_contig86:93972..940871695741044.1029403-UTR-S-ischiensis_contig86:93972..94087Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 93973..94087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig86.20182.1

>prot_S-ischiensis_contig86.20182.1 ID=prot_S-ischiensis_contig86.20182.1|Name=mRNA_S-ischiensis_contig86.20182.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=272bp
MNKLAAFARPSWDDAGEGSDLEEGEVAVSPAAEPVSQGTPPQDVTREGGA
TAPAPALKWERASPTHGSGHVSGGSTGEESPGRDTSRSQSPSQGQGWGWN
QGALLGGVHPGTGQPHQLHLPIGMGGLSGFEATAWQPSGIIGNGHGYGSV
AANYGGRLFPVHGPWATSHGFYSFDQKGERERKDYSVDGSGAHDGHSGGR
QQDKPFKREHREDPRRGGGGGYHHGHDDHHRGGYDGYDASRGGRRQHRGR
DEGGVRTRPRSERWGWQGREED
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mRNA from alignment at S-ischiensis_contig86:92217..94087-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig86.20182.1 ID=mRNA_S-ischiensis_contig86.20182.1|Name=mRNA_S-ischiensis_contig86.20182.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1871bp|location=Sequence derived from alignment at S-ischiensis_contig86:92217..94087- (Schizocladia ischiensis KU_0333)
TTCAGTGAAGCAGCTGCAGCACGGGCCCCGGTGAAACTGCAGTCCTGGAG
CCTGAGACGCGGCCCCGGAGTGCAAGGGGGCGAGGCGCTCGAGGGGACAC
TTTCCCCACATTTAAATGAACAAATTGGCTGCTTTCGCGCGACCCTCGTG
GGACGATGCAGGAGAGGGCAGTGACCTGGAAGAGGGGGAGGTCGCCGTGT
CCCCGGCCGCCGAGCCAGGTGAATGGACAGCGAAACACGTGGAACCGACT
TTAACCCTTGTACCCCTGGCAAATTGGACCTGTACACTAAAACCCTATGA
CTATACGGACCCCAGGGGGTAGTGATGGAGTGCGCCGATCCATCACACCC
CTGACATCCCCCCCCCCGAACTCTCCCCTCTCCTCCTCACCCTAGCAGTT
TCCCAAGGCACTCCACCACAGGACGTGACCCGCGAGGGCGGTGCGACGGC
GCCGGCCCCAGCACTCAAGTGGGAACGTGCATCGCCAACCCATGGCAGCG
GCCATGTCTCTGGCGGCAGCACCGGCGAGGAGAGTCCTGGCAGGGACACC
AGCAGGAGCCAAAGCCCAAGCCAGGGTCAGGGCTGGGGCTGGAACCAAGG
CGCACTTCTGGGAGGGGTGCATCCTGGGTGGGTTTGTGTGTCTTTCTCAG
TCCGCCTGCCTGCATGCATACAGTTTATCTTTTCAGCTCCTGGCGATTTC
CCCATCTAGGGGAACTGTTTTTCTCTCCTTGCGTAATATCTACCAGCCCA
GGTGAGGTAGGTATTGTAGGAACTTCGTGCGACTATGCCTGCATAAGTAG
TCGTCCCGGTTCTTTTTTGTTTTACCGGACACATTCCTGCTGCCGGCAAG
ACGGGCCAATGTGAGGTGACGCGGTGGCCTGAGCCACAATGACGTCTGCG
CGGCAGCCCCCACTCGAAAGAACAACCTCCAAGTCCAGCAGAAGCATCGT
GTACTCGTACTTCGAAGTACTACCAAGATGAACATGGTGCATGGTATCAT
GACCGCACATGTGTGTATTTCTCGTGCCCATGAGTATACTATATACCCCG
TCATATATCTGCTCCGTCTCGTCTGAGGCGCGGGGTCAATGGTCTCGGGA
CTACGACAAGCACCACGTGAACACACATATATATATGTATATATATTAAT
ACGCGTGAATGTACACACGCGTCCATCCATGGGAAAATGGCAGGACTGGT
CAGCCACACCAGCTACACCTGCCCATTGGCATGGGCGGCCTGTCCGGGTT
TGAGGCCACCGCCTGGCAACCCTCGGGCATCATCGGCAATGGCCATGGGT
ATGGCAGCGTTGCTGCCAACTATGGGGGGAGGCTGTTCCCCGTGCACGGG
CCCTGGGCCACCTCGCACGGATTTTACTCGTTTGACCAGAAAGGGGAAAG
GGAAAGGAAGGACTACTCCGTGGATGGCAGCGGCGCCCATGATGGCCACA
GTGGAGGAAGACAGCAGGACAAGCCATTCAAGAGAGAGCACAGGTGATGG
AGTATCGATCAGCAATGATGTGATGTGATGTGATACGCACTCTAGTTTAC
TGCAGTTTGACATCACGTCGCATCGAATCACATCAACATCACAGAGGTGA
CCCTAGTGGGACAGGCGACAGTGATGGAATATCGATCAGTAGATAGTTAT
CAGGCTCGGCTGATATTTGCGGGTGGTGTTACTGCAGGGAGGACCCGAGG
AGGGGAGGGGGCGGCGGCTATCACCACGGCCACGATGATCATCACCGTGG
TGGTTATGATGGCTATGATGCGAGCAGAGGCGGCCGGCGTCAACATCGTG
GGAGGGACGAGGGAGGCGTGCGCACAAGGCCGAGGAGCGAACGGTGGGGG
TGGCAAGGGCGAGAGGAGGAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig86:92217..94087-

>mRNA_S-ischiensis_contig86.20182.1 ID=mRNA_S-ischiensis_contig86.20182.1|Name=mRNA_S-ischiensis_contig86.20182.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1632bp|location=Sequence derived from alignment at S-ischiensis_contig86:92217..94087- (Schizocladia ischiensis KU_0333)
ATGAACAAATTGGCTGCTTTCGCGCGACCCTCGTGGGACGATGCAGGAGA
GGGCAGTGACCTGGAAGAGGGGGAGGTCGCCGTGTCCCCGGCCGCCGAGC
CAGATGAACAAATTGGCTGCTTTCGCGCGACCCTCGTGGGACGATGCAGG
AGAGGGCAGTGACCTGGAAGAGGGGGAGGTCGCCGTGTCCCCGGCCGCCG
AGCCAGTTTCCCAAGGCACTCCACCACAGGACGTGACCCGCGAGGGCGGT
GCGACGGCGCCGGCCCCAGCACTCAAGTGGGAACGTGCATCGCCAACCCA
TGGCAGCGGCCATGTCTCTGGCGGCAGCACCGGCGAGGAGAGTCCTGGCA
GGGACACCAGCAGGAGCCAAAGCCCAAGCCAGGGTCAGGGCTGGGGCTGG
AACCAAGGCGCACTTCTGGGAGGGGTGCATCCTGGTTTCCCAAGGCACTC
CACCACAGGACGTGACCCGCGAGGGCGGTGCGACGGCGCCGGCCCCAGCA
CTCAAGTGGGAACGTGCATCGCCAACCCATGGCAGCGGCCATGTCTCTGG
CGGCAGCACCGGCGAGGAGAGTCCTGGCAGGGACACCAGCAGGAGCCAAA
GCCCAAGCCAGGGTCAGGGCTGGGGCTGGAACCAAGGCGCACTTCTGGGA
GGGGTGCATCCTGGGACTGGTCAGCCACACCAGCTACACCTGCCCATTGG
CATGGGCGGCCTGTCCGGGTTTGAGGCCACCGCCTGGCAACCCTCGGGCA
TCATCGGCAATGGCCATGGGTATGGCAGCGTTGCTGCCAACTATGGGGGG
AGGCTGTTCCCCGTGCACGGGCCCTGGGCCACCTCGCACGGATTTTACTC
GTTTGACCAGAAAGGGGAAAGGGAAAGGAAGGACTACTCCGTGGATGGCA
GCGGCGCCCATGATGGCCACAGTGGAGGAAGACAGCAGGACAAGCCATTC
AAGAGAGAGCACAGGACTGGTCAGCCACACCAGCTACACCTGCCCATTGG
CATGGGCGGCCTGTCCGGGTTTGAGGCCACCGCCTGGCAACCCTCGGGCA
TCATCGGCAATGGCCATGGGTATGGCAGCGTTGCTGCCAACTATGGGGGG
AGGCTGTTCCCCGTGCACGGGCCCTGGGCCACCTCGCACGGATTTTACTC
GTTTGACCAGAAAGGGGAAAGGGAAAGGAAGGACTACTCCGTGGATGGCA
GCGGCGCCCATGATGGCCACAGTGGAGGAAGACAGCAGGACAAGCCATTC
AAGAGAGAGCACAGGGAGGACCCGAGGAGGGGAGGGGGCGGCGGCTATCA
CCACGGCCACGATGATCATCACCGTGGTGGTTATGATGGCTATGATGCGA
GCAGAGGCGGCCGGCGTCAACATCGTGGGAGGGACGAGGGAGGCGTGCGC
ACAAGGCCGAGGAGCGAACGGTGGGGGTGGCAAGGGCGAGAGGAGGACGG
AGGACCCGAGGAGGGGAGGGGGCGGCGGCTATCACCACGGCCACGATGAT
CATCACCGTGGTGGTTATGATGGCTATGATGCGAGCAGAGGCGGCCGGCG
TCAACATCGTGGGAGGGACGAGGGAGGCGTGCGCACAAGGCCGAGGAGCG
AACGGTGGGGGTGGCAAGGGCGAGAGGAGGAC
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