mRNA_S-ischiensis_contig86.20177.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig86.20177.1
Unique NamemRNA_S-ischiensis_contig86.20177.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig86.20177.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT)

HSP 1 Score: 222 bits (565), Expect = 2.160e-59
Identity = 107/249 (42.97%), Postives = 163/249 (65.46%), Query Frame = 1
Query:    1 WKQAAKEEYDSLVKTKVWSLAKPPPGANICGSRWVFKTKYKADGSVGRCKARFVAQGFSQLPGDDYVDTYAPVCRFSSVRTILALAAYHNWPLRQVDIKTAVLQSILKDVTIYVKQPEGFEQTGKDGSHLVCQLKRTLYGLKQSPRLWHATLHAFLLDAGLAPNEIDPCVYIK--RGKNSGLPDLLMSIYVDDLLLTGTNPNSVETLLKSMSARFDAQDLGTAAYLLGMEIKHNHDLHKLHRSQKKYAD 741
            WK+A   EY+SL+K   W L  PP G NI GSRWVFK K+ ADGSV R KAR VAQG+SQ  G DY + ++PV R++S+R++LA+A   +W + Q+D+KTA LQ  L +V I++KQPEG+    ++    VC+L R++YGLKQ+ R W++ +  FL+  G   +  DPC+YIK  + KN  +  +++++YVDD+L    N   ++   ++++ RF  +D+G  +Y+LGM +K N +   L  +Q KY +
Sbjct:  829 WKEATDSEYESLMKNDTWELVPPPKGKNIVGSRWVFKVKHTADGSVERFKARLVAQGYSQSQGIDYQEIFSPVVRYTSIRSLLAVANICDWEISQMDVKTAFLQGELDEV-IFMKQPEGY--VDQERPDHVCKLNRSIYGLKQAARCWNSAIDTFLISNGYTKSNADPCIYIKSIKRKNGKIDFVILALYVDDILWFSNNTEMLKKEKEALAKRFQVEDMGEVSYVLGMSVKRNREARTLTINQPKYLE 1074          
BLAST of mRNA_S-ischiensis_contig86.20177.1 vs. uniprot
Match: H3H8P6_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8P6_PHYRM)

HSP 1 Score: 205 bits (521), Expect = 1.290e-58
Identity = 108/245 (44.08%), Postives = 151/245 (61.63%), Query Frame = 1
Query:    1 WKQAAKEEYDSLVKTKVWSLAKPPPGANICGSRWVFKTKYKADGSVGRCKARFVAQGFSQLPGDDYVDTYAPVCRFSSVRTILALAAYHNWPLRQVDIKTAVLQSILKDVTIYVKQPEGFEQTGKDGSHLVCQLKRTLYGLKQSPRLWHATLHAFLLDAGLAPNEIDPCVYIKRGKNSGLPDLLMSIYVDDLLLTGTNPNSVETLLKSMSARFDAQDLGTAAYLLGMEIKHNHDLHKLHRSQKKY 735
            WK+A   E DSL+K   W +   P G    G RWVF+ K    G + R KAR VA+GFSQ    DY +T+APV +F+S+R +L+LAA +   L Q+D+KTA L  +L D  IY+ QP+G+    +D    VC+LKR+LYGLKQSPR+W+ T+  F+L  G    E D CVY+KR    G   + +++YVDDL+L  +N   +E+   ++S RF+  DLG   Y LGMEIK++H   K+   Q K+
Sbjct:   39 WKEACDSECDSLLKNDTWDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYDIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVL-DEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKR---DGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKF 277          
BLAST of mRNA_S-ischiensis_contig86.20177.1 vs. uniprot
Match: A0A7D9JFU5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JFU5_PARCT)

HSP 1 Score: 210 bits (535), Expect = 3.490e-58
Identity = 106/249 (42.57%), Postives = 155/249 (62.25%), Query Frame = 1
Query:    1 WKQAAKEEYDSLVKTKVWSLAKPPPGANICGSRWVFKTKYKADGSVGRCKARFVAQGFSQLPGDDYVDTYAPVCRFSSVRTILALAAYHNWPLRQVDIKTAVLQSILKDVTIYVKQPEGFEQTGKDGSHLVCQLKRTLYGLKQSPRLWHATLHAFLLDAGLAPNEIDPCVYIKRGKNSG--LPDLLMSIYVDDLLLTGTNPNSVETLLKSMSARFDAQDLGTAAYLLGMEIKHNHDLHKLHRSQKKYAD 741
            WKQA KEEY+SL+  + W L  PP G N+ GS+WV K K  ADG+V R KAR VAQG+SQ PG +Y + ++PV R SS+RT+LALA  HN  + Q+D+KTA L   ++   IY+ QP+GF    ++    VC+LK++LYGLKQS R W+ TL +FL   G   +  D C+Y+K  KN    +  +++++YVDD++    + N + T    +   F+  D G   ++LGM IK + +   L  SQ++Y +
Sbjct:   29 WKQALKEEYNSLISNETWELVPPPEGCNVIGSKWVMKIKRDADGNVDRHKARLVAQGYSQTPGINYEEVFSPVARHSSIRTLLALANKHNLEIHQMDVKTAFLNGYIEH-DIYMSQPDGF--VDQEHPEYVCKLKKSLYGLKQSARCWNQTLDSFLTKNGYRKSNADNCIYVKSIKNDNGFISFVILAVYVDDIIPISNDINMLNTEKDLLCKHFEMTDQGEIHFILGMTIKRDRETKTLFISQQRYLE 274          
BLAST of mRNA_S-ischiensis_contig86.20177.1 vs. uniprot
Match: H3H934_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H934_PHYRM)

HSP 1 Score: 202 bits (515), Expect = 7.630e-58
Identity = 108/244 (44.26%), Postives = 151/244 (61.89%), Query Frame = 1
Query:    4 KQAAKEEYDSLVKTKVWSLAKPPPGANICGSRWVFKTKYKADGSVGRCKARFVAQGFSQLPGDDYVDTYAPVCRFSSVRTILALAAYHNWPLRQVDIKTAVLQSILKDVTIYVKQPEGFEQTGKDGSHLVCQLKRTLYGLKQSPRLWHATLHAFLLDAGLAPNEIDPCVYIKRGKNSGLPDLLMSIYVDDLLLTGTNPNSVETLLKSMSARFDAQDLGTAAYLLGMEIKHNHDLHKLHRSQKKY 735
            K+A   E DSL+K   W +   P G    G RWVF+ K    G + R KAR VA+GFSQ  G DY +T+APV +F+S+R +L+LAA +   L Q+D+KTA L  +L D  IY+ QP+G+    +D    VC+LKR+LYGLKQSPR+W+ T+  F+L  G    E D CVY+KR    G   + +++YVDDL+L  +N   +E+   ++S RF+  DLG   Y LGMEIK++ D  K+   Q K+
Sbjct:    1 KEACDSECDSLLKNDTWDVVPLPKGRKAIGCRWVFRVKDNQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVL-DEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKR---DGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKF 238          
BLAST of mRNA_S-ischiensis_contig86.20177.1 vs. uniprot
Match: A0A5N6PND6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PND6_9ASTR)

HSP 1 Score: 204 bits (519), Expect = 9.840e-58
Identity = 104/247 (42.11%), Postives = 153/247 (61.94%), Query Frame = 1
Query:    1 WKQAAKEEYDSLVKTKVWSLAKPPPGANICGSRWVFKTKYKADGSVGRCKARFVAQGFSQLPGDDYVDTYAPVCRFSSVRTILALAAYHNWPLRQVDIKTAVLQSILKDVTIYVKQPEGFEQTGKDGSHLVCQLKRTLYGLKQSPRLWHATLHAFLLDAGLAPNEIDPCVYIKRGKNSGLPDLLMSIYVDDLLLTGTNPNSVETLLKSMSARFDAQDLGTAAYLLGMEIKHNHDLHKLHRSQKKYAD 741
            WK+A K E DS+++   W L   PPG    G RW+FK K KADGS+ + KAR V +GF Q  G DY DTY+PV R +S+R +LA+AA  N  + Q+D+KTA L   L++  I ++QPEGF   G++G   VC+L ++LYGLKQ+P+ WH      +L+ G   NE D CVY+K   N+    +++ +YVDD+++ G++   +++    +  RFD +D+G A  +LG++I  N   H L  SQ  Y D
Sbjct:   86 WKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEE-EILMEQPEGFSAPGQEGK--VCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFKINECDKCVYVK---NTMRGYVILCLYVDDMVIVGSDDKMIKSTKDMLKTRFDMKDMGLADVILGIKI--NRTQHGLVLSQSHYVD 324          
BLAST of mRNA_S-ischiensis_contig86.20177.1 vs. uniprot
Match: A0A5N6LGV6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LGV6_9ASTR)

HSP 1 Score: 209 bits (533), Expect = 2.050e-57
Identity = 107/247 (43.32%), Postives = 154/247 (62.35%), Query Frame = 1
Query:    1 WKQAAKEEYDSLVKTKVWSLAKPPPGANICGSRWVFKTKYKADGSVGRCKARFVAQGFSQLPGDDYVDTYAPVCRFSSVRTILALAAYHNWPLRQVDIKTAVLQSILKDVTIYVKQPEGFEQTGKDGSHLVCQLKRTLYGLKQSPRLWHATLHAFLLDAGLAPNEIDPCVYIKRGKNSGLPDLLMSIYVDDLLLTGTNPNSVETLLKSMSARFDAQDLGTAAYLLGMEIKHNHDLHKLHRSQKKYAD 741
            WK+A K E DS+++ + W L   PPG    G RW+FK K KADGS+ + KAR V +GF Q  G DY DTY+PV R +S+R +LA+AA  N  + Q+D+KTA L   L++  IY++QPEGF   G++G   VC+L ++LYGLKQ+P+ WH      +L+ G   NE D CVY+K   N+    +++ +YVDD+L+ G++   ++     + ARFD +D+G A  +LG +I  N   H L  SQ  Y D
Sbjct:   86 WKEAIKNEIDSILQNRTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEE-EIYMEQPEGFSAPGQEGK--VCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFKINECDKCVYVK---NTMRGYVILRLYVDDMLIVGSDDKMIKCTKDMLKARFDMKDMGLADVILGKKI--NRTQHGLVLSQSHYVD 324          
BLAST of mRNA_S-ischiensis_contig86.20177.1 vs. uniprot
Match: H3H7U0_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7U0_PHYRM)

HSP 1 Score: 206 bits (524), Expect = 7.060e-57
Identity = 109/248 (43.95%), Postives = 152/248 (61.29%), Query Frame = 1
Query:    1 WKQAAKEEYDSLVKTKVWSLAKPPPGANICGSRWVFKTKYKADGSVGRCKARFVAQGFSQLPGDDYVDTYAPVCRFSSVRTILALAAYHNWPLRQVDIKTAVLQSILKDVTIYVKQPEGFEQTGKDGSHLVCQLKRTLYGLKQSPRLWHATLHAFLLDAGLAPNEIDPCVYIKRGKNSGLPDLLMSIYVDDLLLTGTNPNSVETLLKSMSARFDAQDLGTAAYLLGMEIKHNHDLHKLHRSQKKYADD 744
            WK+A   E DSL+K   W +   P G    G RWVF+ K    G + R KAR VA+GFSQ  G DY +T+APV +F+S+R +L+LAA +   L Q+D+KTA L  +L D  IY+ QP+G+    +D    VC+LKR+LYGLKQSPR+W+ T+  F+L  G    E D CVY+KR    G   + +++YVDDL+L  +N   +E+   ++S RF+  DLG   Y LGMEI+ +    K+   Q K+A D
Sbjct:  176 WKEACDSECDSLLKNDTWDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVL-DEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKR---DGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIEQDVVTGKMSMRQTKFAKD 417          
BLAST of mRNA_S-ischiensis_contig86.20177.1 vs. uniprot
Match: A0A5N6NFL8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NFL8_9ASTR)

HSP 1 Score: 207 bits (527), Expect = 7.200e-57
Identity = 106/247 (42.91%), Postives = 155/247 (62.75%), Query Frame = 1
Query:    1 WKQAAKEEYDSLVKTKVWSLAKPPPGANICGSRWVFKTKYKADGSVGRCKARFVAQGFSQLPGDDYVDTYAPVCRFSSVRTILALAAYHNWPLRQVDIKTAVLQSILKDVTIYVKQPEGFEQTGKDGSHLVCQLKRTLYGLKQSPRLWHATLHAFLLDAGLAPNEIDPCVYIKRGKNSGLPDLLMSIYVDDLLLTGTNPNSVETLLKSMSARFDAQDLGTAAYLLGMEIKHNHDLHKLHRSQKKYAD 741
            WK+A K E DS+++   W L   PPG    G RW+FK K KADGS+ + KAR V +GF Q  G DY DTY+PV R +S+R +LA+AA  N  + Q+D+KTA L   L++  IY++QPEGF   G++G   VC+L ++LYGLKQ+P+ WH      +L+ G   NE D CVY+K   N+    +++ +YVDD+L+ G++   +++    + ARFD +D+G A  +LG++I  N   + L  SQ  Y D
Sbjct:  151 WKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEE-EIYMEQPEGFSALGQEGK--VCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFKINECDKCVYVK---NTTRGYVILCLYVDDMLIVGSDDKMIKSTKDMLKARFDMKDMGLADVILGVKI--NRTQNGLVLSQSHYVD 389          
BLAST of mRNA_S-ischiensis_contig86.20177.1 vs. uniprot
Match: A0A5N6P044_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P044_9ASTR)

HSP 1 Score: 206 bits (525), Expect = 9.530e-57
Identity = 105/247 (42.51%), Postives = 155/247 (62.75%), Query Frame = 1
Query:    1 WKQAAKEEYDSLVKTKVWSLAKPPPGANICGSRWVFKTKYKADGSVGRCKARFVAQGFSQLPGDDYVDTYAPVCRFSSVRTILALAAYHNWPLRQVDIKTAVLQSILKDVTIYVKQPEGFEQTGKDGSHLVCQLKRTLYGLKQSPRLWHATLHAFLLDAGLAPNEIDPCVYIKRGKNSGLPDLLMSIYVDDLLLTGTNPNSVETLLKSMSARFDAQDLGTAAYLLGMEIKHNHDLHKLHRSQKKYAD 741
            WK+A K E DS+++   W L   PPG    G RW+FK K KADGS+ + KAR V +GF Q  G DY DTY+PV R +S+R +LA+AA  N  + Q+D+KT+ L   L++  IY++QPEGF   G++G   VC+L ++LYGLKQ+P+ WH      +L+ G   NE D CVY+K   N+    +++ +YVDD+L+ G++   +++    + ARFD +D+G A  +LG++I  N   + L  SQ  Y D
Sbjct:   86 WKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTSFLNGDLEE-EIYMEQPEGFSAPGQEGK--VCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFKINECDKCVYVK---NTMRGYVILCLYVDDMLIVGSDDKMIKSTKDMLKARFDMKDMGLADVILGIKI--NRTQYGLVLSQSHYVD 324          
BLAST of mRNA_S-ischiensis_contig86.20177.1 vs. uniprot
Match: A0A438E0Z6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E0Z6_VITVI)

HSP 1 Score: 202 bits (515), Expect = 1.070e-56
Identity = 102/247 (41.30%), Postives = 153/247 (61.94%), Query Frame = 1
Query:    1 WKQAAKEEYDSLVKTKVWSLAKPPPGANICGSRWVFKTKYKADGSVGRCKARFVAQGFSQLPGDDYVDTYAPVCRFSSVRTILALAAYHNWPLRQVDIKTAVLQSILKDVTIYVKQPEGFEQTGKDGSHLVCQLKRTLYGLKQSPRLWHATLHAFLLDAGLAPNEIDPCVYIKRGKNSGLPDLLMSIYVDDLLLTGTNPNSVETLLKSMSARFDAQDLGTAAYLLGMEIKHNHDLHKLHRSQKKYAD 741
            WK+A K E DS+++   W L   PPG     S+W+FK K K DGS+ + KAR V +G+ Q  G DY DTY+PV R +S+R +LA+AA  N  + Q+D+KTA L   L D  IY++QPEGF   G++    VC+L ++LYGLKQ+P+ WH      +L  G   NE D CVY+K  ++  +   ++ +YVDD+L+ G++   + +    +++RFD +D+G A  +LG++IK   D  +L  SQ +Y D
Sbjct:   21 WKEAIKSEIDSILQNHTWELVDLPPGCKPLSSKWIFKRKMKVDGSIDKYKARLVIKGYRQTEGLDYFDTYSPVTRINSIRMVLAIAALRNLEIHQMDVKTAFLNGDL-DEEIYMEQPEGFSAPGQEKK--VCKLVKSLYGLKQAPKQWHEKFDNVMLSHGFKINECDKCVYVKDTEHGYV---IVCLYVDDMLIVGSDDKMITSTKNMLNSRFDMKDMGLADVILGIKIKRTSD--ELILSQSQYVD 259          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig86.20177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S7HNY1_PARCT2.160e-5942.97Retrovirus-related Pol poly from transposon TNT 1-... [more]
H3H8P6_PHYRM1.290e-5844.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9JFU5_PARCT3.490e-5842.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H934_PHYRM7.630e-5844.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6PND6_9ASTR9.840e-5842.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6LGV6_9ASTR2.050e-5743.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H7U0_PHYRM7.060e-5743.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6NFL8_9ASTR7.200e-5742.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6P044_9ASTR9.530e-5742.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438E0Z6_VITVI1.070e-5641.30Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig86contigS-ischiensis_contig86:43709..45186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.8
Seed ortholog evalue3.7e-51
Seed eggNOG ortholog164328.Phyra86833
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHRV@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1478
Cds size924
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817346.791887-CDS-S-ischiensis_contig86:43708..446321622817346.791887-CDS-S-ischiensis_contig86:43708..44632Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 43709..44632 +
1695741045.1124914-CDS-S-ischiensis_contig86:43708..446321695741045.1124914-CDS-S-ischiensis_contig86:43708..44632Schizocladia ischiensis KU_0333CDSS-ischiensis_contig86 43709..44632 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817346.8039706-UTR-S-ischiensis_contig86:44632..451861622817346.8039706-UTR-S-ischiensis_contig86:44632..45186Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 44633..45186 +
1695741045.1341238-UTR-S-ischiensis_contig86:44632..451861695741045.1341238-UTR-S-ischiensis_contig86:44632..45186Schizocladia ischiensis KU_0333UTRS-ischiensis_contig86 44633..45186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig86.20177.1prot_S-ischiensis_contig86.20177.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig86 43709..44632 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig86.20177.1

>prot_S-ischiensis_contig86.20177.1 ID=prot_S-ischiensis_contig86.20177.1|Name=mRNA_S-ischiensis_contig86.20177.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=308bp
WKQAAKEEYDSLVKTKVWSLAKPPPGANICGSRWVFKTKYKADGSVGRCK
ARFVAQGFSQLPGDDYVDTYAPVCRFSSVRTILALAAYHNWPLRQVDIKT
AVLQSILKDVTIYVKQPEGFEQTGKDGSHLVCQLKRTLYGLKQSPRLWHA
TLHAFLLDAGLAPNEIDPCVYIKRGKNSGLPDLLMSIYVDDLLLTGTNPN
SVETLLKSMSARFDAQDLGTAAYLLGMEIKHNHDLHKLHRSQKKYADDNS
TDLVWTLASLCQPQGILVTSTLLGRHCLSPLTTAYTEKLLGLCYICAGSQ
GLTFHTQ*
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mRNA from alignment at S-ischiensis_contig86:43709..45186+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig86.20177.1 ID=mRNA_S-ischiensis_contig86.20177.1|Name=mRNA_S-ischiensis_contig86.20177.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1478bp|location=Sequence derived from alignment at S-ischiensis_contig86:43709..45186+ (Schizocladia ischiensis KU_0333)
TGGAAGCAAGCTGCAAAAGAGGAATATGATTCCCTTGTTAAAACCAAGGT TTGGTCTCTAGCCAAACCCCCTCCAGGTGCCAATATATGTGGCAGTAGAT GGGTGTTTAAGACCAAATACAAGGCTGATGGCTCCGTAGGAAGGTGTAAA GCACGTTTTGTGGCCCAAGGCTTTAGTCAACTCCCAGGAGATGACTATGT AGACACCTATGCTCCTGTCTGCAGGTTCTCCTCAGTGAGAACTATCCTAG CCCTAGCAGCCTACCACAACTGGCCTTTAAGGCAAGTGGATATCAAAACA GCCGTCCTACAGAGTATCCTCAAGGATGTGACAATTTATGTCAAACAACC TGAGGGTTTTGAGCAAACTGGCAAGGATGGCTCCCATCTTGTCTGTCAGC TCAAAAGAACCCTCTATGGCCTGAAGCAGTCGCCTAGACTGTGGCATGCC ACTTTGCATGCCTTCCTGCTTGATGCAGGGTTGGCTCCAAATGAAATCGA CCCCTGCGTGTACATCAAGAGGGGGAAAAATTCGGGCCTGCCTGATTTAT TGATGTCCATCTATGTGGACGATTTACTTCTCACAGGGACTAATCCAAAT TCTGTGGAAACACTTCTCAAATCTATGTCAGCCAGGTTTGATGCACAAGA CCTTGGCACAGCTGCTTACCTGCTAGGCATGGAGATCAAACATAATCATG ACTTGCATAAGCTCCACCGCAGCCAAAAGAAGTACGCTGATGACAACTCC ACAGATTTGGTATGGACTCTTGCATCTCTGTGCCAACCCCAGGGGATTTT GGTAACTTCCACCCTGTTGGGCAGACACTGCTTGAGCCCACTGACCACGG CATATACCGAGAAATTATTGGGTCTCTGCTATATCTGTGCCGGCTCACAA GGTCTGACATTTCATACGCAGTGATGCAACTTTCTTGTGTGGTCTCTAAA CCATATGCCATTCACATGGCTGCAGCCAAACGCCTACTTAGGTACTTAAA GGGCACTACCACACTTGGTATGAAGTACCTTGGCAATATAAGACCTCCCA CAACTCCGGTTCTGGAAGGCTATTGTGATGCCGATTATGGGGGTGGTCTT GCCACTCGAAAGAGCTGTACAGGCTACACATATTTCCTAGCCCAAAGTCC CATAACTTGGTACTCCAAGCTGCAGTCATTAGTCACACAAAGCTCAACAG AGAGCGAGTACATTTCGTTAGCCCACGCGGGCAATGAAGCTATCTACTTA CGCGACTTGCTCTCTTCTCTAGGAGCTGAGCAACAAGGCCCGACTGTTAT CTACGAAGATAACCAAAGCGCCATTCACCTCCCGCGCAGCGAAGGATGGA GCAGCCGCACAAAGCACATTGCGAATCGTTACCATCGCATTCGTCAACTC ATCACTGACGATATCGTCGACCTTGAGCACATCGGGACACTCTCCCAACG TGCCGACTGCCTCACCAAGCAGTTCAAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig86:43709..45186+

>mRNA_S-ischiensis_contig86.20177.1 ID=mRNA_S-ischiensis_contig86.20177.1|Name=mRNA_S-ischiensis_contig86.20177.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1848bp|location=Sequence derived from alignment at S-ischiensis_contig86:43709..45186+ (Schizocladia ischiensis KU_0333)
TGGAAGCAAGCTGCAAAAGAGGAATATGATTCCCTTGTTAAAACCAAGGT
TTGGTCTCTAGCCAAACCCCCTCCAGGTGCCAATATATGTGGCAGTAGAT
GGGTGTTTAAGACCAAATACAAGGCTGATGGCTCCGTAGGAAGGTGTAAA
GCACGTTTTGTGGCCCAAGGCTTTAGTCAACTCCCAGGAGATGACTATGT
AGACACCTATGCTCCTGTCTGCAGGTTCTCCTCAGTGAGAACTATCCTAG
CCCTAGCAGCCTACCACAACTGGCCTTTAAGGCAAGTGGATATCAAAACA
GCCGTCCTACAGAGTATCCTCAAGGATGTGACAATTTATGTCAAACAACC
TGAGGGTTTTGAGCAAACTGGCAAGGATGGCTCCCATCTTGTCTGTCAGC
TCAAAAGAACCCTCTATGGCCTGAAGCAGTCGCCTAGACTGTGGCATGCC
ACTTTGCATGCCTTCCTGCTTGATGCAGGGTTGGCTCCAAATGAAATCGA
CCCCTGCGTGTACATCAAGAGGGGGAAAAATTCGGGCCTGCCTGATTTAT
TGATGTCCATCTATGTGGACGATTTACTTCTCACAGGGACTAATCCAAAT
TCTGTGGAAACACTTCTCAAATCTATGTCAGCCAGGTTTGATGCACAAGA
CCTTGGCACAGCTGCTTACCTGCTAGGCATGGAGATCAAACATAATCATG
ACTTGCATAAGCTCCACCGCAGCCAAAAGAAGTACGCTGATGACAACTCC
ACAGATTTGGTATGGACTCTTGCATCTCTGTGCCAACCCCAGGGGATTTT
GGTAACTTCCACCCTGTTGGGCAGACACTGCTTGAGCCCACTGACCACGG
CATATACCGAGAAATTATTGGGTCTCTGCTATATCTGTGCCGGCTCACAA
GGTCTGACATTTCATACGCAGTGATGGAAGCAAGCTGCAAAAGAGGAATA
TGATTCCCTTGTTAAAACCAAGGTTTGGTCTCTAGCCAAACCCCCTCCAG
GTGCCAATATATGTGGCAGTAGATGGGTGTTTAAGACCAAATACAAGGCT
GATGGCTCCGTAGGAAGGTGTAAAGCACGTTTTGTGGCCCAAGGCTTTAG
TCAACTCCCAGGAGATGACTATGTAGACACCTATGCTCCTGTCTGCAGGT
TCTCCTCAGTGAGAACTATCCTAGCCCTAGCAGCCTACCACAACTGGCCT
TTAAGGCAAGTGGATATCAAAACAGCCGTCCTACAGAGTATCCTCAAGGA
TGTGACAATTTATGTCAAACAACCTGAGGGTTTTGAGCAAACTGGCAAGG
ATGGCTCCCATCTTGTCTGTCAGCTCAAAAGAACCCTCTATGGCCTGAAG
CAGTCGCCTAGACTGTGGCATGCCACTTTGCATGCCTTCCTGCTTGATGC
AGGGTTGGCTCCAAATGAAATCGACCCCTGCGTGTACATCAAGAGGGGGA
AAAATTCGGGCCTGCCTGATTTATTGATGTCCATCTATGTGGACGATTTA
CTTCTCACAGGGACTAATCCAAATTCTGTGGAAACACTTCTCAAATCTAT
GTCAGCCAGGTTTGATGCACAAGACCTTGGCACAGCTGCTTACCTGCTAG
GCATGGAGATCAAACATAATCATGACTTGCATAAGCTCCACCGCAGCCAA
AAGAAGTACGCTGATGACAACTCCACAGATTTGGTATGGACTCTTGCATC
TCTGTGCCAACCCCAGGGGATTTTGGTAACTTCCACCCTGTTGGGCAGAC
ACTGCTTGAGCCCACTGACCACGGCATATACCGAGAAATTATTGGGTCTC
TGCTATATCTGTGCCGGCTCACAAGGTCTGACATTTCATACGCAGTGA
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