mRNA_S-ischiensis_contig85.20157.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20157.1
Unique NamemRNA_S-ischiensis_contig85.20157.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:488844..490922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size239
Cds size237
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817340.1207647-CDS-S-ischiensis_contig85:488843..4888851622817340.1207647-CDS-S-ischiensis_contig85:488843..488885Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 488844..488885 -
1695741040.0955946-CDS-S-ischiensis_contig85:488843..4888851695741040.0955946-CDS-S-ischiensis_contig85:488843..488885Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 488844..488885 -
1622817340.1332812-CDS-S-ischiensis_contig85:490727..4909221622817340.1332812-CDS-S-ischiensis_contig85:490727..490922Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 490728..490922 -
1695741040.1058547-CDS-S-ischiensis_contig85:490727..4909221695741040.1058547-CDS-S-ischiensis_contig85:490727..490922Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 490728..490922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20157.1prot_S-ischiensis_contig85.20157.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 488844..490922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20157.1

>prot_S-ischiensis_contig85.20157.1 ID=prot_S-ischiensis_contig85.20157.1|Name=mRNA_S-ischiensis_contig85.20157.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=79bp
MGAGGGAGAGGGAASSPPAARAEHAEYEHEVVAAERERLGMGQTLARATF
VFSITRLCLTLSKMQKVCLAMKGVNTRLP
back to top

mRNA from alignment at S-ischiensis_contig85:488844..490922-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20157.1 ID=mRNA_S-ischiensis_contig85.20157.1|Name=mRNA_S-ischiensis_contig85.20157.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2079bp|location=Sequence derived from alignment at S-ischiensis_contig85:488844..490922- (Schizocladia ischiensis KU_0333)
ATGGGGGCAGGGGGGGGTGCCGGGGCGGGGGGAGGGGCGGCGAGTTCCCC
CCCGGCTGCGCGCGCGGAACATGCGGAATATGAGCATGAGGTGGTGGCGG
CGGAACGGGAACGATTGGGCATGGGGCAGACGCTGGCCCGTGCGACTTTT
GTGTTCAGCATCACACGCCTGTGCCTCACGCTGTCCAAGATGCAGGCGAG
CGACCTGACCAATAGTAAAAGTACTGTACTCGAGTAGGAGCAGTACAACT
ATGCATGTAGTGTACAGTAGTGTATACAGTACATCAGAGCTTAAACTTTC
GAGGGCCACTTTTGCGTTCAACTTCACACACCTGTGCCCCATGCTGTCCA
AGATGCAGGCGAGTTGACCTGACCTGTGCACGATAGTGCGGTACAATGGT
ACGGGTACTGTACAGTACAGTGCAGTAGTTTGATATCACATCGCATCACA
TTCTAACCCATGTGATGTGGTGGGCACTCTACAGCGCAGCAGCTTGGCAT
CACGTCACACCACCTACAGTACCGTATTTGTCAGAGAGATTTTGATGTGA
TGCGATGCGTACTCTAAAGTGCAGTAGTAGCAGGAACAACACAGGGCGAG
GTGCAGTGCAGTAGTTTAACATCACATCACACCAGTACTCATGGTGTGCT
TGCCGTGGTCCCGACACCGCTGACCACTACAACGCCTTTTAGCTCGACCG
ACTAAATAGACATACCGGACTGCCCAACACTCACTACTAGTTGCTGTAGC
AGTACACACACACACACACGCAAAGAGCAGCATTGCTTGCAAGTATCAAG
GATCGGTCCACACGTCACCAATGGCCGGAACAGTGGCCGCCCTCCCTCGC
GGAACAAAAGGCACATCACAACACATCACATCGCATCATATCACATCACA
ACACATCAGCATCAAGTAGCTTCTTGGAAGGGCTTTATCAACCATGACTA
GAGCTAAAGCCTCACGCGGCTTACTGTGCGAGCCGTCACCACAGCTAGTA
GAGTCCATGTGCAAGTGCAGAGTGTCTTGAAAGAAGGGTTAACTCTTCTG
GCACACTACATAGACCCACACTTTGGGACGGGGCCTGGAACTCGTGGGCC
TCTACAACAACAAATAGTTTATACAAATGCAGAGTCGAAAACAACAAATA
GTTGATATAATGCAGAGTCGAAAACAACAAATAGTCCATACAAATGCAGA
GTCGAAAACAACAAACAATTGATACAAATGCGGAGTCAAAAACAACAAAT
AGTCAGCACAAACGCAGAGTGTCGCTGCTACCAACTACCAGTACTCGAGT
ACGGGTACAGTACGTAGGCGGGCGCCGCCGGGGGACCGGCGGGTACTACC
CAGCCTGACGGAAGTGTCAGAACATCTGTATTCCATGATGTTTTAAACGA
CACACATGCCTATTGTCCCCTATACAAGACTCTTTACAGCCCGTTGCAGC
ACTCTGAGTCAGGAGATACTCTAGCTCCCCTCATCGCTCCTTCGATATTT
CTGCCATAGTCAGCACAGGCCCCCAGGCCTCACTGTAAAGTACATTGCAC
AGCTCAGGACTCTTGATGCACCCCCAACTCCTGTGCACATGCCCCGTGTT
TAGTGTTGTGATCTGGTGCTGGTTTTTACGGTTCGGTACCAGTAAACTGG
TTCAACCGGTTAACCGACCGGTGGGCGATCGTGTAGCCGGAGCGGGTGAC
ATGACCGTTGTTTGTTGATTTTGGCAATACTTTAGCCGTTGCCGGCAACC
ATTTAACTTAGAACCGACCGGTCACAAGTCCGGCTAACAGTTAAACGGGT
AGGCCTTGCCAGTTCACAACTCTATCTTTTGCGCTGCCCCTTTTGCTTGT
TGCCAGCTGGAGACCACCATCAAGGGGCTCTTATCCCTTTCACCCCTGCT
CAATTGGACTTACACACTAAAACCCTATGATTATACGGACCCCAGGGGTA
AAAGGGTACTCGTAGACAGTTAAAGTGGTACTGTAGGCCTTGCCAGTTCA
CAACTCTACCCATGGTTGCTGTGTGCCGCCCACGCAGAAGGTCTGCCTGG
CCATGAAGGGCGTCAACACCCGTCTGCCC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig85:488844..490922-

>mRNA_S-ischiensis_contig85.20157.1 ID=mRNA_S-ischiensis_contig85.20157.1|Name=mRNA_S-ischiensis_contig85.20157.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=474bp|location=Sequence derived from alignment at S-ischiensis_contig85:488844..490922- (Schizocladia ischiensis KU_0333)
ATGGGGGCAGGGGGGGGTGCCGGGGCGGGGGGAGGGGCGGCGAGTTCCCC
CCCGGCTGCGCGCGCGGAACATGCGGAATATGAGCATGAGGTGGTGGCGG
CGGAACGGGAACGATTGGGCATGGGGCAGACGCTGGCCCGTGCGACTTTT
GTGTTCAGCATCACACGCCTGTGCCTCACGCTGTCCAAGATGCAGATGGG
GGCAGGGGGGGGTGCCGGGGCGGGGGGAGGGGCGGCGAGTTCCCCCCCGG
CTGCGCGCGCGGAACATGCGGAATATGAGCATGAGGTGGTGGCGGCGGAA
CGGGAACGATTGGGCATGGGGCAGACGCTGGCCCGTGCGACTTTTGTGTT
CAGCATCACACGCCTGTGCCTCACGCTGTCCAAGATGCAGAAGGTCTGCC
TGGCCATGAAGGGCGTCAACACCCGTCTGCCCAAGGTCTGCCTGGCCATG
AAGGGCGTCAACACCCGTCTGCCC
back to top