mRNA_S-ischiensis_contig85.20155.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20155.1
Unique NamemRNA_S-ischiensis_contig85.20155.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig85.20155.1 vs. uniprot
Match: D7G466_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G466_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 6.230e-15
Identity = 58/125 (46.40%), Postives = 76/125 (60.80%), Query Frame = 2 
Query:   56 MGDMDTEAQLDMSLGDIIK-RSKTQASTITRAPLAGGGKIRPSGGRVERRQVSAPYSKPVISPRSSTFSGALTNRVYVGNLAYSVTWKELKDHMRQAGNVIKADVPITSGGRSRGFGWVAEHCAA 427
            M  MDTEA L MSL +++  + K +     R     GGK+R +G R  R+Q + PY +P  +P+ S   G+  NRVYVGNLA++VTWKELKD M   G   KA+VP  + GRSRG+G V    AA
Sbjct:    1 MDTMDTEALLGMSLDEMLAAKPKKKVDRGGR-----GGKVRNTG-RASRQQQTQPYRQP--APKGSVGGGS-NNRVYVGNLAWTVTWKELKDLMGTCGPC-KAEVPCGADGRSRGYGLVTFTSAA 115
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BLAST of mRNA_S-ischiensis_contig85.20155.1 vs. uniprot
Match: A0A7S2LTJ8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2LTJ8_9DINO)

HSP 1 Score: 74.3 bits (181), Expect = 1.730e-11
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 2 
Query:  242 RSSTFSGALTNRVYVGNLAYSVTWKELKDHMRQAGNVIKADVPITSGGRSRGFGWVAEHCAARP*WRTAHDLV 460
            +++   G + NRVYVGNLA++V+WKELKDHM+Q G V  ADV +  GGRSRG G VA        +RTA D  
Sbjct:   13 KAAEVRGPIENRVYVGNLAWNVSWKELKDHMKQVGEVAFADVMLEPGGRSRGCGLVA--------YRTADDAA 77
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BLAST of mRNA_S-ischiensis_contig85.20155.1 vs. uniprot
Match: A0A7S0LIU0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LIU0_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 5.350e-11
Identity = 42/89 (47.19%), Postives = 49/89 (55.06%), Query Frame = 2 
Query:  143 RAPLAGGGKIRPSGGRVERRQVSAPYSKPVISPRSSTFSGALTNRVYVGNLAYSVTWKELKDHMRQAGNVIKADVPITSGGRSRGFGWV 409
            R  + GGG   P      RR VSAP         SS  +G    +VYVGNL+Y  TW+ LKDH RQAG V+ ADV   S GRS+G G V
Sbjct:   46 RENVMGGGLPAPG----TRRGVSAPPRAAPPMSMSSAAAGTGGTKVYVGNLSYDTTWQRLKDHFRQAGEVVHADVMQESSGRSKGCGLV 130
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BLAST of mRNA_S-ischiensis_contig85.20155.1 vs. uniprot
Match: A0A7S2KX18_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KX18_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.420e-10
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 2 
Query:  167 KIRPSGGRVERRQVSAPYSKPVISPRSSTFSGAL---TNRVYVGNLAYSVTWKELKDHMRQAGNVIKADVPITSGGRSRGFGWV 409
            K+ P GGR E      PY K   + ++ST + A    T R+YVGNL++SV+W+ELKDHM+ AG+V +AD+  T  GRS+G G V
Sbjct:   58 KMTPRGGRHE------PYEKKEENKQTSTITKAAELATKRLYVGNLSWSVSWRELKDHMKSAGDVTRADILQTPDGRSKGCGIV 135
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BLAST of mRNA_S-ischiensis_contig85.20155.1 vs. uniprot
Match: A0A7S3MDE3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDE3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.150e-10
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = 2 
Query:  152 LAGGGKIRPSGGRVERRQVSAPYSKPVISPR--SSTFSGALTNRVYVGNLAYSVTWKELKDHMRQAGNVIKADVPITSGGRSRGFGWV 409
            + GG K  P+ GR  R   S+       SPR   ST      +RVYVGNL + V+W++LKDHM+QAG V++ADV   + GRS+G G V
Sbjct:    5 MTGGRKATPNSGR--RVFASSQVQHGSKSPRLERSTSVQQSGSRVYVGNLKFEVSWQDLKDHMKQAGRVLRADVMTDASGRSKGCGIV 90
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BLAST of mRNA_S-ischiensis_contig85.20155.1 vs. uniprot
Match: A0A7S2BWM7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BWM7_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.600e-10
Identity = 29/48 (60.42%), Postives = 40/48 (83.33%), Query Frame = 2 
Query:  266 LTNRVYVGNLAYSVTWKELKDHMRQAGNVIKADVPITSGGRSRGFGWV 409
            L NRV+VGNL+++V+W++LKDHMRQ G+V++ADV     GRS+GFG V
Sbjct:   11 LGNRVFVGNLSWNVSWQDLKDHMRQMGDVVRADVITAPDGRSKGFGIV 58
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BLAST of mRNA_S-ischiensis_contig85.20155.1 vs. uniprot
Match: L8GR31_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GR31_ACACA)

HSP 1 Score: 68.9 bits (167), Expect = 3.390e-10
Identity = 42/88 (47.73%), Postives = 54/88 (61.36%), Query Frame = 2 
Query:  269 TNRVYVGNLAYSVTWKELKDHMRQAGNVIKADVPITSGGRSRGFGWVAEHCA---ARP*WRTAHDLVHDNTTHDI---PPAAATGGLV 514
            TNRVYVGNL +  +W++LKDHMR+AGNV +ADV I   GRS+G G + E+     A+   +T +D   D T   I   P AAA  G V
Sbjct:   24 TNRVYVGNLPWQTSWQDLKDHMRKAGNVTRADVFIDETGRSKGCG-IVEYSTPEEAQNAIKTLNDTKLDETERLIFSCPAAAAVWGEV 110
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BLAST of mRNA_S-ischiensis_contig85.20155.1 vs. uniprot
Match: A0A1S8W579_9FUNG (Uncharacterized protein n=3 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W579_9FUNG)

HSP 1 Score: 69.3 bits (168), Expect = 1.710e-9
Identity = 39/90 (43.33%), Postives = 52/90 (57.78%), Query Frame = 2 
Query:  140 TRAPLAGGGKIRPSGGRVERRQVSAPYSKPVISPRSSTFSGALTNRVYVGNLAYSVTWKELKDHMRQAGNVIKADVPITSGGRSRGFGWV 409
            T  P   G    P+ G       + P++   +    STFS   TN ++VGNL +S TW+ LKD  R+AG+V++A VPI S GRSRGFG V
Sbjct:  286 TATPPTQGSHSPPANGDPSVWTDTPPHTASDVPAAPSTFSNGGTN-LFVGNLPFSTTWQGLKDLFRRAGDVVRAQVPIDSSGRSRGFGVV 374
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BLAST of mRNA_S-ischiensis_contig85.20155.1 vs. uniprot
Match: A0A7J7IJR9_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IJR9_9RHOD)

HSP 1 Score: 67.4 bits (163), Expect = 3.040e-9
Identity = 50/133 (37.59%), Postives = 65/133 (48.87%), Query Frame = 2 
Query:   65 MDTEAQLDMSLGDIIKRSKTQASTITRAPLAGGGKIRPSGGRVERRQVSAPYSKPVISPRSSTFS------------GAL-TNRVYVGNLAYSVTWKELKDHMRQAGNVIKADVPITSGGRSRGFGWVAEHCA 424
            M     +D     +   S T  S +  A  AGG ++    G  E  Q   P +    + R+S               GAL + RVYVGNLA+SVTW+ LKDHMR+AG V+ A+V     GRSRG G V E+ A
Sbjct:   12 MPENGTVDAGTVSVGSESTTFISNMV-ADHAGGAQLNDMTGTAETEQAQEPGATVQRAVRASKLDPNAPPAGPGAEGGALPSRRVYVGNLAWSVTWQALKDHMRKAGEVVFAEVFTERDGRSRGCG-VVEYAA 142
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BLAST of mRNA_S-ischiensis_contig85.20155.1 vs. uniprot
Match: A0A448YVD1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVD1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.320e-9
Identity = 40/109 (36.70%), Postives = 60/109 (55.05%), Query Frame = 2 
Query:   98 GDIIKRSKTQASTITRAPLAGGGKIRPSGGRVERRQVSAPYSKPVISPRSSTFS-----GALTNRVYVGNLAYSVTWKELKDHMRQAGNVIKADVPITSGGRSRGFGWV 409
            G ++ +S   A+   R       K RP   R+   +++    +P   PRS +       G +T ++YVGNL+Y  TW+ELK+H  QAG V++ADV  +  GRS+GFG V
Sbjct:  339 GIVVYQSARDAARAIRELQESDLKGRPV--RLREDKIAGRGPRPARGPRSGSDEPRAPPGVVT-QLYVGNLSYDTTWRELKEHFLQAGEVVRADVKASDSGRSKGFGIV 444
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G466_ECTSI6.230e-1546.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2LTJ8_9DINO1.730e-1152.05Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A7S0LIU0_9EUKA5.350e-1147.19Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S2KX18_9STRA1.420e-1047.62Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S3MDE3_9STRA2.150e-1045.45Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A7S2BWM7_9STRA2.600e-1060.42Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
L8GR31_ACACA3.390e-1047.73Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A1S8W579_9FUNG1.710e-943.33Uncharacterized protein n=3 Tax=Batrachochytrium s... [more]
A0A7J7IJR9_9RHOD3.040e-937.59Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A448YVD1_9STRA6.320e-936.70Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:459906..461306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size904
Cds size465
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20155.1prot_S-ischiensis_contig85.20155.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 459906..460869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817340.0515397-CDS-S-ischiensis_contig85:459905..4599871622817340.0515397-CDS-S-ischiensis_contig85:459905..459987Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 459906..459987 +
1695741040.05783-CDS-S-ischiensis_contig85:459905..4599871695741040.05783-CDS-S-ischiensis_contig85:459905..459987Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 459906..459987 +
1622817340.065074-CDS-S-ischiensis_contig85:460142..4604541622817340.065074-CDS-S-ischiensis_contig85:460142..460454Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 460143..460454 +
1695741040.067733-CDS-S-ischiensis_contig85:460142..4604541695741040.067733-CDS-S-ischiensis_contig85:460142..460454Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 460143..460454 +
1622817340.0779085-CDS-S-ischiensis_contig85:460798..4608691622817340.0779085-CDS-S-ischiensis_contig85:460798..460869Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 460799..460869 +
1695741040.0772564-CDS-S-ischiensis_contig85:460798..4608691695741040.0772564-CDS-S-ischiensis_contig85:460798..460869Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 460799..460869 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817340.0890472-UTR-S-ischiensis_contig85:460869..4613061622817340.0890472-UTR-S-ischiensis_contig85:460869..461306Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 460870..461306 +
1695741040.0860112-UTR-S-ischiensis_contig85:460869..4613061695741040.0860112-UTR-S-ischiensis_contig85:460869..461306Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 460870..461306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20155.1

>prot_S-ischiensis_contig85.20155.1 ID=prot_S-ischiensis_contig85.20155.1|Name=mRNA_S-ischiensis_contig85.20155.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=155bp
HQVLGTARGTPRLSGSTANGRHGHGSAARYVSRGHHQEVQDPSEHHHPRA
AGRGGQDPPVGGAGGKAAGVRAVLQARHIATIIHIFGGLDQPRVRGQLGV
FGDMEGAEGPHEAGGERDQGGRADHFRRAFKGFRVGGRALRGTAMMAHGA
RPCA*
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mRNA from alignment at S-ischiensis_contig85:459906..461306+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20155.1 ID=mRNA_S-ischiensis_contig85.20155.1|Name=mRNA_S-ischiensis_contig85.20155.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1401bp|location=Sequence derived from alignment at S-ischiensis_contig85:459906..461306+ (Schizocladia ischiensis KU_0333)
CACCAGGTGTTGGGTACAGCAAGGGGCACACCTCGACTGTCAGGCTCCAC
AGCAAATGGGCGACATGGACACGGAAGCGCAGGTTCGCCCCCCACGTCGG
GTTGGCCCAGAGGCCGGCAGATTCGTGCCCCATCTTTGCGCGTTTTTAAG
TTCCATGCGTGTTGACTAATTCCGCGGGCGCAAAACAAATCCACGCTCGG
ACCCACTCCTTCTCTCGCCGTGCCGCCAATCGAGCAGCTCGATATGTCTC
TCGGGGACATCATCAAGAGGTCCAAGACCCAAGCGAGCACCATCACCCGC
GCGCCGCTGGCCGGGGGGGGCAAGATCCGCCCGTCGGGGGGGCGGGTGGA
AAGGCGGCAGGTGTCCGCGCCGTACTCCAAGCCCGTCATATCGCCACGAT
CATCCACATTTTCGGGGGCCTTGACCAACCGCGTGTACGTGGGCAACTTG
GCGTATTCGGTGACATGGAAGGAGCTGAAGGACCACATGAGGCAGGCGGG
GAACGTGATCAAGGCGGACGTGCCGATCACTTCCGGCGGGCGTTCAAGGG
TGAGCGCCGTTCTCCCTTCCCTTGTGCTGGGCAGTTTCTGCCTCACCGCC
CCTATTTTCGTTCGCTTATGTGGGTATGCTCGAACGGAGGAGGGCAGAGC
AAGCTCACTCCCCTCAGGATTCAATTTTCCGTGGCCTCAGCACTGGTTCC
ATTCCACTCCGTGCGTGTCTTGTGGGGTTGAGCCAGATGCCCCCTGCTTC
GATCCCCTCCTCCATGGGGTGCGCTCGTGTGTGTATGTGTGCGCGCGTGT
ATGTGCCATGCTGGCCTTGACTCTTTCGCCTCCCCGCCCTTCCCCCCCCA
CCCTACTCCGTGCCCTGCCCTTCCGCCGTGACCGTTCACGCAGGGTTTCG
GGTGGGTGGCAGAGCACTGCGCGGCACGGCCATGATGGCGCACGGCGCAC
GACCTTGTGCATGACAACACTACTCATGATATCCCTCCCGCGGCAGCGAC
GGGGGGGTTGGTCCCCCACTCTAAAAACTACCTTTTACACGGACATGGAA
GGCGCTACCTACCGCAAGGGTTGAATGGGCAGGGCTGGGGGGGGTGGTGG
CGCACGGCTAGGATTGGCCCGTCGGCGGGTGAAAGGGTGAAGGGTGAATG
GGGTGTGGCGGTTATTGGGAGGCGGTTTGTTTGGCCCGGGCTTGTCCACT
AGCTTGTCGCTTGTCTGGCGGCTGCTGCTGTGTACAGCATGCGCCCAAAG
GCAGCGACAGTGGTCAGCCCCCGTGATGATGTTGCAGGGCCAGGGGAGGG
AATTCTCCACATTCTCCACGCTTGGTGGGCGTGTTTGTCGCCGCCGCTGG
AGGGGGGGGGCAGGGGCGCAGTGCAGCGCCAGCACGGCGGGGGGGCTGCG
G
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:459906..461306+

>mRNA_S-ischiensis_contig85.20155.1 ID=mRNA_S-ischiensis_contig85.20155.1|Name=mRNA_S-ischiensis_contig85.20155.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=930bp|location=Sequence derived from alignment at S-ischiensis_contig85:459906..461306+ (Schizocladia ischiensis KU_0333)
CACCAGGTGTTGGGTACAGCAAGGGGCACACCTCGACTGTCAGGCTCCAC
AGCAAATGGGCGACATGGACACGGAAGCGCAGCACCAGGTGTTGGGTACA
GCAAGGGGCACACCTCGACTGTCAGGCTCCACAGCAAATGGGCGACATGG
ACACGGAAGCGCAGCTCGATATGTCTCTCGGGGACATCATCAAGAGGTCC
AAGACCCAAGCGAGCACCATCACCCGCGCGCCGCTGGCCGGGGGGGGCAA
GATCCGCCCGTCGGGGGGGCGGGTGGAAAGGCGGCAGGTGTCCGCGCCGT
ACTCCAAGCCCGTCATATCGCCACGATCATCCACATTTTCGGGGGCCTTG
ACCAACCGCGTGTACGTGGGCAACTTGGCGTATTCGGTGACATGGAAGGA
GCTGAAGGACCACATGAGGCAGGCGGGGAACGTGATCAAGGCGGACGTGC
CGATCACTTCCGGCGGGCGTTCAAGGCTCGATATGTCTCTCGGGGACATC
ATCAAGAGGTCCAAGACCCAAGCGAGCACCATCACCCGCGCGCCGCTGGC
CGGGGGGGGCAAGATCCGCCCGTCGGGGGGGCGGGTGGAAAGGCGGCAGG
TGTCCGCGCCGTACTCCAAGCCCGTCATATCGCCACGATCATCCACATTT
TCGGGGGCCTTGACCAACCGCGTGTACGTGGGCAACTTGGCGTATTCGGT
GACATGGAAGGAGCTGAAGGACCACATGAGGCAGGCGGGGAACGTGATCA
AGGCGGACGTGCCGATCACTTCCGGCGGGCGTTCAAGGGGTTTCGGGTGG
GTGGCAGAGCACTGCGCGGCACGGCCATGATGGCGCACGGCGCACGACCT
TGTGCATGAGGTTTCGGGTGGGTGGCAGAGCACTGCGCGGCACGGCCATG
ATGGCGCACGGCGCACGACCTTGTGCATGA
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