mRNA_S-ischiensis_contig85.20151.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20151.1
Unique NamemRNA_S-ischiensis_contig85.20151.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:421028..423123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size951
Cds size948
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817339.8989036-CDS-S-ischiensis_contig85:421027..4213401622817339.8989036-CDS-S-ischiensis_contig85:421027..421340Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 421028..421340 +
1695741039.943413-CDS-S-ischiensis_contig85:421027..4213401695741039.943413-CDS-S-ischiensis_contig85:421027..421340Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 421028..421340 +
1622817339.9107974-CDS-S-ischiensis_contig85:422487..4231221622817339.9107974-CDS-S-ischiensis_contig85:422487..423122Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 422488..423122 +
1695741039.9577098-CDS-S-ischiensis_contig85:422487..4231221695741039.9577098-CDS-S-ischiensis_contig85:422487..423122Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 422488..423122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20151.1prot_S-ischiensis_contig85.20151.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 421028..423122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20151.1

>prot_S-ischiensis_contig85.20151.1 ID=prot_S-ischiensis_contig85.20151.1|Name=mRNA_S-ischiensis_contig85.20151.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=316bp
GGGGRGRTPSQPAEKVSSTGDVEQDAPPDQTEEEFMQSLFQRTLLPQNLW
EVSDRHLATTLLKLSQARERREWDWHTWEWDLDWAWGGLVLEQQAVPEPS
DRKQVDAPAVLPARANAVASGPSAPRRLSRSETLHVRRMLLSPAAAKATA
AGSGTDAAAAAAAAAPSPVPARAEAVGETGPLAHGQTPCRALGRQSSLPQ
PRSSGCPNNTHADDGSGAGVPQAPARRSQSHSSCAEYGPAGGSGGGSKVK
GGAPRGGRRRASGLGPPGGGRRGGGHACPDGTESQQLQLLGPFAGPAKAL
LDINLSEYAVGEGNLM
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mRNA from alignment at S-ischiensis_contig85:421028..423123+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20151.1 ID=mRNA_S-ischiensis_contig85.20151.1|Name=mRNA_S-ischiensis_contig85.20151.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2096bp|location=Sequence derived from alignment at S-ischiensis_contig85:421028..423123+ (Schizocladia ischiensis KU_0333)
GGCGGCGGCGGCAGGGGCCGCACGCCCTCTCAGCCTGCTGAGAAGGTGTC
GAGCACGGGGGATGTCGAACAAGATGCGCCGCCCGACCAGACCGAGGAGG
AGTTCATGCAGAGCTTGTTCCAGCGCACCCTCCTGCCGCAAAACCTGTGG
GAGGTTTCGGACCGGCACCTGGCCACGACCCTGCTGAAGCTCAGCCAGGC
GCGGGAACGGCGGGAATGGGACTGGCACACGTGGGAGTGGGATTTGGACT
GGGCTTGGGGAGGCCTGGTCCTGGAACAACAGGCGGTTCCGGAACCTTCC
GACAGGAAGCAAGGTGCGGCACAGTATTGTAGTCGTCAGAGAGATCTTGC
CCCCACGGGCCAATTTTCGGGGGAATATTCCTGGCCGGGAATGTCCTGAA
TTGTTCCGAAAACTCTCGAAAAAGTTCCCCCAGGTCTTGAGGGAGATTGT
CCGAGTTTTCCTGCGCGCATCCGAGAAGTATTGGGCGAGAAAGGTTCTCC
CGAAAATTGGCATTGGGGGGCAAGATCTCTGCGACGATTGCAGTACTGCA
GCACTTCCTTGAGGTGCTTCCAGCAGAAGTAGTACAGTACAGTACAGTAC
AGTAGCATAGTAGTCGTACTGCTTCGAAGTACAATACTCAGAAGTGCTCA
TACTTCGGTAGGTACTTGGTATTACAATAATTCATGCGGAGCCCCCCAAG
ACATAAAACGTCCTTCTGCGCAGGGTCGCTGTTCCATGCGCTTCGCTCTT
CAAGTGTGTGCTGCCGTACTCAGTATAGTACAGTAGCACAGAACAGTACA
GCAGTACAGTAGTCGCACTACAATACTCAGAAGTACTCGTACTTCGGTAG
TTGCTTGGTACTACTTTCTGATACTTCATGCAGGGCCCCCCAAGATATGA
AATGTCCTTCTACGTAGGGCCGCCGTTCCATGCGCTTCGCGCTTCAAGCG
TGTGCTGCTGTACTCAGTACAGTAGGTATACTATGTACTGTACTGTACCT
TACGGCACATAAACACCGTGACTACAGTCGTACAGTACTCTGCTGCATTC
TCTACGCCGCCTAAATGCCGTCGCTGGTAGCAGCCGGGACACTCGCTAGT
TGCGCATGTTTTGCTGACAGCGCCTGGTAAGTTGCACCGAGCGGGGCCTC
ACTAGTAAAGTACCTCACTTCCACCCAAGTACAGTAGTGCAGCTTGCATC
ACACACAGTGCTGACAACTTGTACTGCGTAATCTCGTACTACTGCAGCAC
ATTACGCTCTACTACTGTAGTACTTCAAGTACTTCCGGAAGTAGTTGATA
CACCCTGGCACACCAAGTGAGGAGTATTTGTCCACCGCACTGCATGTAGC
AGGTGAGCAACGAAACACACCCGGAAGCAGTACTCCCTACCACCTGACCC
ACACCCCCGTGCTGGCCCCCTCTGCCCCCTTGCCCCGCCCTTGTGCCTCG
GGCTCCTCAGTGGACGCCCCAGCCGTGCTCCCCGCAAGGGCCAATGCCGT
CGCTTCTGGCCCTTCCGCCCCGCGCCGCCTTAGCCGTTCAGAGACACTCC
ACGTGCGGAGAATGCTCCTGTCGCCTGCCGCCGCAAAGGCCACGGCGGCG
GGATCGGGGACCGATGCCGCGGCAGCAGCGGCAGCAGCGGCACCGTCGCC
GGTGCCGGCACGGGCGGAAGCTGTGGGCGAAACAGGCCCGCTTGCCCACG
GGCAGACCCCTTGCAGGGCGCTGGGGCGGCAGTCCAGCCTGCCCCAACCA
CGCAGCAGCGGTTGCCCGAACAACACGCACGCCGATGACGGCAGCGGCGC
CGGGGTGCCGCAGGCACCGGCGAGGAGGTCTCAGTCTCACTCCAGCTGCG
CCGAGTACGGCCCGGCTGGCGGCAGCGGCGGGGGCTCCAAGGTGAAAGGC
GGCGCCCCACGGGGCGGGAGGCGCCGGGCCAGCGGCCTTGGCCCCCCGGG
GGGGGGAAGGCGCGGCGGCGGGCACGCTTGCCCGGACGGCACGGAATCGC
AGCAGCTGCAGCTGCTGGGGCCGTTCGCGGGGCCCGCGAAAGCCCTGCTG
GATATCAACCTGTCCGAGTACGCGGTGGGGGAGGGGAACCTCATGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:421028..423123+

>mRNA_S-ischiensis_contig85.20151.1 ID=mRNA_S-ischiensis_contig85.20151.1|Name=mRNA_S-ischiensis_contig85.20151.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1896bp|location=Sequence derived from alignment at S-ischiensis_contig85:421028..423123+ (Schizocladia ischiensis KU_0333)
GGCGGCGGCGGCAGGGGCCGCACGCCCTCTCAGCCTGCTGAGAAGGTGTC
GAGCACGGGGGATGTCGAACAAGATGCGCCGCCCGACCAGACCGAGGAGG
AGTTCATGCAGAGCTTGTTCCAGCGCACCCTCCTGCCGCAAAACCTGTGG
GAGGTTTCGGACCGGCACCTGGCCACGACCCTGCTGAAGCTCAGCCAGGC
GCGGGAACGGCGGGAATGGGACTGGCACACGTGGGAGTGGGATTTGGACT
GGGCTTGGGGAGGCCTGGTCCTGGAACAACAGGCGGTTCCGGAACCTTCC
GACAGGAAGCAAGGGCGGCGGCGGCAGGGGCCGCACGCCCTCTCAGCCTG
CTGAGAAGGTGTCGAGCACGGGGGATGTCGAACAAGATGCGCCGCCCGAC
CAGACCGAGGAGGAGTTCATGCAGAGCTTGTTCCAGCGCACCCTCCTGCC
GCAAAACCTGTGGGAGGTTTCGGACCGGCACCTGGCCACGACCCTGCTGA
AGCTCAGCCAGGCGCGGGAACGGCGGGAATGGGACTGGCACACGTGGGAG
TGGGATTTGGACTGGGCTTGGGGAGGCCTGGTCCTGGAACAACAGGCGGT
TCCGGAACCTTCCGACAGGAAGCAAGTGGACGCCCCAGCCGTGCTCCCCG
CAAGGGCCAATGCCGTCGCTTCTGGCCCTTCCGCCCCGCGCCGCCTTAGC
CGTTCAGAGACACTCCACGTGCGGAGAATGCTCCTGTCGCCTGCCGCCGC
AAAGGCCACGGCGGCGGGATCGGGGACCGATGCCGCGGCAGCAGCGGCAG
CAGCGGCACCGTCGCCGGTGCCGGCACGGGCGGAAGCTGTGGGCGAAACA
GGCCCGCTTGCCCACGGGCAGACCCCTTGCAGGGCGCTGGGGCGGCAGTC
CAGCCTGCCCCAACCACGCAGCAGCGGTTGCCCGAACAACACGCACGCCG
ATGACGGCAGCGGCGCCGGGGTGCCGCAGGCACCGGCGAGGAGGTCTCAG
TCTCACTCCAGCTGCGCCGAGTACGGCCCGGCTGGCGGCAGCGGCGGGGG
CTCCAAGGTGAAAGGCGGCGCCCCACGGGGCGGGAGGCGCCGGGCCAGCG
GCCTTGGCCCCCCGGGGGGGGGAAGGCGCGGCGGCGGGCACGCTTGCCCG
GACGGCACGGAATCGCAGCAGCTGCAGCTGCTGGGGCCGTTCGCGGGGCC
CGCGAAAGCCCTGCTGGATATCAACCTGTCCGAGTACGCGGTGGGGGAGG
GGAACCTCATGTGGACGCCCCAGCCGTGCTCCCCGCAAGGGCCAATGCCG
TCGCTTCTGGCCCTTCCGCCCCGCGCCGCCTTAGCCGTTCAGAGACACTC
CACGTGCGGAGAATGCTCCTGTCGCCTGCCGCCGCAAAGGCCACGGCGGC
GGGATCGGGGACCGATGCCGCGGCAGCAGCGGCAGCAGCGGCACCGTCGC
CGGTGCCGGCACGGGCGGAAGCTGTGGGCGAAACAGGCCCGCTTGCCCAC
GGGCAGACCCCTTGCAGGGCGCTGGGGCGGCAGTCCAGCCTGCCCCAACC
ACGCAGCAGCGGTTGCCCGAACAACACGCACGCCGATGACGGCAGCGGCG
CCGGGGTGCCGCAGGCACCGGCGAGGAGGTCTCAGTCTCACTCCAGCTGC
GCCGAGTACGGCCCGGCTGGCGGCAGCGGCGGGGGCTCCAAGGTGAAAGG
CGGCGCCCCACGGGGCGGGAGGCGCCGGGCCAGCGGCCTTGGCCCCCCGG
GGGGGGGAAGGCGCGGCGGCGGGCACGCTTGCCCGGACGGCACGGAATCG
CAGCAGCTGCAGCTGCTGGGGCCGTTCGCGGGGCCCGCGAAAGCCCTGCT
GGATATCAACCTGTCCGAGTACGCGGTGGGGGAGGGGAACCTCATG
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