mRNA_S-ischiensis_contig85.20147.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20147.1
Unique NamemRNA_S-ischiensis_contig85.20147.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:387817..392506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size758
Cds size756
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20147.1prot_S-ischiensis_contig85.20147.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 387817..392506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817339.7318861-CDS-S-ischiensis_contig85:387816..3879501622817339.7318861-CDS-S-ischiensis_contig85:387816..387950Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 387817..387950 -
1695741039.8296812-CDS-S-ischiensis_contig85:387816..3879501695741039.8296812-CDS-S-ischiensis_contig85:387816..387950Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 387817..387950 -
1622817339.7427647-CDS-S-ischiensis_contig85:389914..3901581622817339.7427647-CDS-S-ischiensis_contig85:389914..390158Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 389915..390158 -
1695741039.839107-CDS-S-ischiensis_contig85:389914..3901581695741039.839107-CDS-S-ischiensis_contig85:389914..390158Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 389915..390158 -
1622817339.7533405-CDS-S-ischiensis_contig85:392128..3925061622817339.7533405-CDS-S-ischiensis_contig85:392128..392506Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 392129..392506 -
1695741039.8487468-CDS-S-ischiensis_contig85:392128..3925061695741039.8487468-CDS-S-ischiensis_contig85:392128..392506Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 392129..392506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20147.1

>prot_S-ischiensis_contig85.20147.1 ID=prot_S-ischiensis_contig85.20147.1|Name=mRNA_S-ischiensis_contig85.20147.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=252bp
TEQQTPAAPGASSTVVAAEEVGVAPAVAGPRLTQQAQAGAVAAPQDGEAT
ASAAGLLPSQLEQPGVAASAVDYSVDQDEEDWDFSVRDLEQLPLSSRGGS
SSAYTGGAAAEEHLKPSATAAVGTSDGWDAANGQEVEDLWANPGIWTGTR
MLRNKDIFNGPDDASAALFGGTGGTGWVGPTPEELPPAPPSRAQARALAR
ARTAAAAGVFAHRGGHHGGATPPQGTENPSAVDGEEVPHPHPPEALPEHL
DG
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mRNA from alignment at S-ischiensis_contig85:387817..392506-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20147.1 ID=mRNA_S-ischiensis_contig85.20147.1|Name=mRNA_S-ischiensis_contig85.20147.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4690bp|location=Sequence derived from alignment at S-ischiensis_contig85:387817..392506- (Schizocladia ischiensis KU_0333)
ACAGAGCAGCAGACCCCCGCTGCCCCCGGTGCCAGCTCCACAGTTGTTGC
TGCGGAAGAAGTGGGAGTTGCCCCTGCTGTAGCAGGACCGCGGCTGACAC
AGCAGGCCCAGGCCGGTGCTGTGGCAGCGCCTCAAGACGGGGAGGCCACT
GCCTCCGCTGCTGGCCTCCTCCCGAGCCAGCTGGAGCAGCCTGGGGTGGC
TGCGTCGGCGGTGGACTACAGTGTGGACCAGGATGAGGAGGACTGGGACT
TCTCTGTGCGTGATCTGGAGCAGCTCCCCCTCAGCTCGCGGGGGGGCAGC
AGCAGCGCTTACACGGGGGGGGCGGCTGCGGAGGAGCATCTCAAGCCGAG
CGCCACAGCTGCCGTGGGCACATCTGACGTGAGCGGTGGGGGGAGCCGGT
GTGGTTTGTGTGTGTGTGTGTGTGTGGTTTTGTACGCGGGCCCGGCTGCG
GGGGAGCATATAAAGCCGAGCGCCACAGCTGCCTTGGGCACGGATGTGAA
TGGGGGAGGGGGAGCAGCTTTGGTAGGTGTGTGTGTGTGTGGTTTTGTGG
TTTTTCTTCCTCTCCCCCCCTTATTCGGAAGGTTCCATTGCATCCCTCCG
GGTTGTTGCACGCGAGTGTCCCTCATTCTCATGTCGGCTCTTGAGGATTC
GCGACGCGATCCGCACTTTTATTGCCGGCAAGAGCCCTTGTGTGTACACT
ACTAACAGCAACAACACAGGGCGAGGTGCAGGTCACGCCACTAAAGACCT
CAATAGTGGCCCTTCCTTATACCTCGCCAGGGGAAGTTTGTGTGGGGAAG
GGGAGAAAAGGAGGAGGGGGAGGAGGACGGGGAGGAAGAGGAGGAGGGGG
AGTGGGGGGGGGGAAGAGGAAGGAGAGGAAGTACAGTAGTGTTGGTTTGG
CGGGCGAGTTCCGGGCCCCGTCCCGAGCATTGGGGCCTCGCCGGAAGCAC
ATACACTGTAGTAGTTTGGGGATACGAGACGTTTTGAGCCGCCAGGTGCA
GTAGTTAGGAGGCAGCATTTTCAGTAGCCCAAGTAGTTTGGAGTGAAGTA
CTTCGCAGCACATCCAGTAGTTTGGGGAACGGGGCGTTGTGAGCCACCAG
GTGCAGCATGTGGTTAGGAGGCAGCGTTTTCAGTATACCAAGTAGTTTGG
AGTGAAGTACTTCGAAGTACTTCGAAGTGCATCCAGTAGTTGGGGGGTAC
GAGACGTGTTCAGTCACCAGGTGTAGTAGTTAGGAGGCAGCAGTATCAGT
ATAACCCAAGTAGTTTGGAGCGAGGTGCTTCAAACTACATCCAGTAGTTT
GGGGGTATGAGGTGTTTTGAGCCACCAGGTGCAGTCGTTAGGAGGCGGCA
TTTTCAGTTACCCAAGCAGCTTGGAGTGAAGTACATCGAAGCACACCCAG
TAGTTTGGGGGTATGAGACGTTTTCAGCCACCAGGTGCAGTAGTTAGGAG
ACAGCATTTTCAGTAACCCAAGTAGTGTGGAGTGAAGTACTTCGAGGTAC
ACATCGTATTGGCAGGAACAACGTAGTAGCTTGGGGGGATTGTATGAGAC
GTTTTCAGTCACCAGGTGCAGTAGTTAGGAGGCGGCGATTCATATAAATT
GTAACGAGGTACAATTGCACGTGTGTGCGATTGACTGTTCTCGTATTTTT
AGTGGATTCATTAAAGAATGGAATGTTATTATATCAGTGCTTATAGTAGT
TAGGAGGCGGCATTTTCAGTAAAACCCAAGCAGTTTGACGCGGGAACAAG
CGGGCAAGTTCGGCGCCCCGTCCCACACAATCGGGACCTCACCAGTGGGT
AGACTGAACCTTTGCTTCCACTCACAGGACACAGGAACAAGGCACTCATA
GATATTCATCGTCGGCAAGACCTCTCTCCTCCAGGGATGCAAAATATCCA
GCCTTGATCAATATAACACCCGTGATTTGTTCCTGGCACACTGTTGCAAC
AAACACCCTCTCAGGCGGGCGCGCCAGGGCAGCCCGGCGGCGGGCCGAAA
GCAGGCTCCCCCCCACAGGGCAGTGATGGAATATCTAAGCAAATCAGCCT
ATTTGTCGACAGTGCCGATCTATGTATCTGTCGACAAGTAGTCGATATTC
GATGGTTTGACCCACGCTACATCCAAGTGCCGTAGTTCGTAGCGCCACCC
ACGAAATCAGTCGAGCCCGATAACTATCTACAGCATTGACCGATATTCCA
TCACTGCCTCCCACATGGATGGCACTTAACCCCTAAGTGGTGCCCTTTTA
GGCCCTTAGCTAGAGGTAATTGGGGGCAATTAGACCTGCAATGAAGGCTA
ATTTGGCCCCAATTGCCCTCCAAGTGCCAACCCTGCCCCCCCGCGCAGGG
ATGGGACGCGGCCAACGGCCAGGAAGTGGAGGACCTCTGGGCCAACCCCG
GCATATGGACTGGTACCCGCATGCTCCGCAACAAAGACATATTCAACGGG
CCTGACGACGCCAGCGCCGCCTTGTTTGGCGGTACTGGCGGTACTGGCTG
GGTGGGCCCGACCCCGGAGGAGCTACCGCCTGCCCCCCCGTCGCGGGCCC
AGGCCCGTGCCTTGGCCCGGGCCCGGACTGCAGCGGCTGCAGGTGACTTG
CCCCGTGAGGTTTATTAACTGTTTCTACTTGGCAGAAATACCTTAGCTGT
ATTGAGGGGAGCTAGAGATATCTCCTGGACTGAGAGGGCTTCAAGGGGCT
GTAGAGTCTTATGTAGGGCTCTAGGGGACAAGAGGCCATGTGTGTCGTTT
TGAACATCATGGATACAGATGTTCTGAGACTACTTGCACTGTAGGAGGTG
TGGGGTGAGGGTACCGATGGTAAGGTCCTCCAAGAGTGAATTTATTCGAA
GTGCTTCGAAGTACTTCGAATTACCTGCTCCGCCTCGCACGAGGCGCGGG
GTCAATGGTCTCGGGACTCCGGCAAGCACACGTGAGTACATGTATATACT
TTGAATTACTAACTGTTTGTACACTGAACTATAGCAGCTAGGTGTGGCCG
ATCGTTCAGTCTCCCAAGAGTGAAGTTATCATTTGAGGCATCAGGTGTGC
AGTGAGTGCTCACGCCAGTGTTATTTTGTTATTGTTGTTATTATTATTGT
TGTTACTGTTATTGTTGTTGCTATTCTTGTATATACTTCGCATATAGCAA
GAGTCCACGGCTAAATAGCTACTCCTGCCGGAGGGCAAACCTGAAGTTTC
GAATGAGGGCTGTCGGCATTGCACGCAAGGTTATGTCGCAAGACAAACCA
ATGAGTACATATCTACGACGTATATATATATATATATGCATATATATATA
TTACTTCGTAAACCTATGTTGCATTGTTGTTGTCTGCTGTAGTCCCGAGA
CCGTTTTGGCCGCTGGCCTCGCGTCCCTGCCATGCCGGGACCGACCATGC
CCGGTTTTCTGCGGCATGGCGTGGGTTACCCGCCCATCCCAGCTTGCCAC
TGGGACCCTTACAAGCCACTTGCCTGGTCATGGGTTGGGAAGGGGTGCAA
AAAGAAAAAAAAAAACGTGGGTTGCACGTCCATCGCAGCTTGCCATTGGG
ACCCTCACAAGCCACTTGCCTGGTCATGGGTTGGGAAGCGGTGCAACCCT
TTCATTTATTCACGTGCATGTGTTGGCAAGCAGGGTTGGCACTTAACCCC
CAAGTGGCGCCCTTTTAGGCCCTTAATTGGAGGTAAATAGGGACAGTTAG
ACCTACATAAAACGAAGGCTAGTTGGGCCCTACTGTAGTTAGCCTCTAAG
TGGCAACCCTGTTGGCAAGGACCCAATTCCCCACGGATAATTCAACCCCC
GGGGGATTGTCGAGACTGCAACCTCTGATTGCTAGTTGTCAACTCCCAAG
GCCTATGTACCAGTTTACCTGTTAACCGGTCGCGTGACCGGTTGGTTTTA
ACCGGTTGTCGGTACCGGCTAACGTGTTGCCACAATCAACGAATAGCGGT
CATGCCACCCACTCCGGCTTCACGGTGGGCCACCGGTCGGTTAACCGGTT
AAACCAGTTAACTGGTACCGACCGGTAAAAACCGGCGCCAGTTCACAACA
CTACCAGTTGCGACCCCGTTCACGGACCACTGGGCTAAACGAGCACTGAC
TGACACTGCGTAAGGCAGTGCTACTTGTGCAGCACAGCACGAGGAACAAG
GTGATTCATGTAAATTGCAACGAGGTACAATCGCACGTGTGCGAGATTGA
TTGTTCTCGTATAAGTGGTTATCCCTTTTAAGAATTTAGTGTTCTCATAG
TACTGTAGTGACTATCACATCAACTAATTAAAAACAAGAAACAAAATACG
AGGAGCAAGGTAAGTATCGGCAGCGAATGTCCATGTTCGGCAAGGAGACT
GACAATCGATGGTCAAGGCGCGGGCAGCGTCACACAATGGTACGCAGCAA
CACACTATACGCGAACACTCAATCTCACACACGTGCAATTGTGCCTCACT
ACAATTTATTCAAACACATGCAGCAACACACAGGTGATAGATACTCCCCG
CGGAAGAAGCTTGCAATTTGGCCGAGCCGTCCCCTGTACGCCCAATACCG
CATCAGGCGTTTTTGCCCACCGGGGCGGCCACCACGGCGGGGCCACGCCC
CCCCAGGGTACGGAAAACCCGTCGGCCGTGGACGGAGAAGAGGTCCCGCA
CCCACACCCTCCAGAGGCCCTCCCTGAACATCTTGATGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:387817..392506-

>mRNA_S-ischiensis_contig85.20147.1 ID=mRNA_S-ischiensis_contig85.20147.1|Name=mRNA_S-ischiensis_contig85.20147.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1512bp|location=Sequence derived from alignment at S-ischiensis_contig85:387817..392506- (Schizocladia ischiensis KU_0333)
ACAGAGCAGCAGACCCCCGCTGCCCCCGGTGCCAGCTCCACAGTTGTTGC
TGCGGAAGAAGTGGGAGTTGCCCCTGCTGTAGCAGGACCGCGGCTGACAC
AGCAGGCCCAGGCCGGTGCTGTGGCAGCGCCTCAAGACGGGGAGGCCACT
GCCTCCGCTGCTGGCCTCCTCCCGAGCCAGCTGGAGCAGCCTGGGGTGGC
TGCGTCGGCGGTGGACTACAGTGTGGACCAGGATGAGGAGGACTGGGACT
TCTCTGTGCGTGATCTGGAGCAGCTCCCCCTCAGCTCGCGGGGGGGCAGC
AGCAGCGCTTACACGGGGGGGGCGGCTGCGGAGGAGCATCTCAAGCCGAG
CGCCACAGCTGCCGTGGGCACATCTGACACAGAGCAGCAGACCCCCGCTG
CCCCCGGTGCCAGCTCCACAGTTGTTGCTGCGGAAGAAGTGGGAGTTGCC
CCTGCTGTAGCAGGACCGCGGCTGACACAGCAGGCCCAGGCCGGTGCTGT
GGCAGCGCCTCAAGACGGGGAGGCCACTGCCTCCGCTGCTGGCCTCCTCC
CGAGCCAGCTGGAGCAGCCTGGGGTGGCTGCGTCGGCGGTGGACTACAGT
GTGGACCAGGATGAGGAGGACTGGGACTTCTCTGTGCGTGATCTGGAGCA
GCTCCCCCTCAGCTCGCGGGGGGGCAGCAGCAGCGCTTACACGGGGGGGG
CGGCTGCGGAGGAGCATCTCAAGCCGAGCGCCACAGCTGCCGTGGGCACA
TCTGACGGATGGGACGCGGCCAACGGCCAGGAAGTGGAGGACCTCTGGGC
CAACCCCGGCATATGGACTGGTACCCGCATGCTCCGCAACAAAGACATAT
TCAACGGGCCTGACGACGCCAGCGCCGCCTTGTTTGGCGGTACTGGCGGT
ACTGGCTGGGTGGGCCCGACCCCGGAGGAGCTACCGCCTGCCCCCCCGTC
GCGGGCCCAGGCCCGTGCCTTGGCCCGGGCCCGGACTGCAGCGGCTGCAG
GGATGGGACGCGGCCAACGGCCAGGAAGTGGAGGACCTCTGGGCCAACCC
CGGCATATGGACTGGTACCCGCATGCTCCGCAACAAAGACATATTCAACG
GGCCTGACGACGCCAGCGCCGCCTTGTTTGGCGGTACTGGCGGTACTGGC
TGGGTGGGCCCGACCCCGGAGGAGCTACCGCCTGCCCCCCCGTCGCGGGC
CCAGGCCCGTGCCTTGGCCCGGGCCCGGACTGCAGCGGCTGCAGGCGTTT
TTGCCCACCGGGGCGGCCACCACGGCGGGGCCACGCCCCCCCAGGGTACG
GAAAACCCGTCGGCCGTGGACGGAGAAGAGGTCCCGCACCCACACCCTCC
AGAGGCCCTCCCTGAACATCTTGATGGCGCGTTTTTGCCCACCGGGGCGG
CCACCACGGCGGGGCCACGCCCCCCCAGGGTACGGAAAACCCGTCGGCCG
TGGACGGAGAAGAGGTCCCGCACCCACACCCTCCAGAGGCCCTCCCTGAA
CATCTTGATGGC
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