mRNA_S-ischiensis_contig85.20145.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20145.1
Unique NamemRNA_S-ischiensis_contig85.20145.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig85.20145.1 vs. uniprot
Match: A0A836CI19_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI19_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.040e-9
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   25 VGHQSGIDAREGQLRESLQRVVREIEGVVARE-GQEDSVTVDPDGLIPDAFWERNEAPFRASVS 213
            VGHQSGIDA E +LRE    VV  I  V+AR+  Q  SV+VDP G +P AF+ERNE  FR  +S
Sbjct:  834 VGHQSGIDASEERLREGAVAVVSAIAAVIARDDAQGTSVSVDPYGTVPAAFFERNEGAFRGGIS 897
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BLAST of mRNA_S-ischiensis_contig85.20145.1 vs. uniprot
Match: B7FRE1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FRE1_PHATC)

HSP 1 Score: 56.2 bits (134), Expect = 1.290e-6
Identity = 40/137 (29.20%), Postives = 66/137 (48.18%), Query Frame = 1 
Query:   13 LLALVGHQSGIDAREGQLRESLQRVVREIEGVVAREGQEDSVTVDPD---------GLIPDAFWERNEAPFRASVSRDNKKVGLAYRKVEQAAQQLIKAVGEDFSANPRD-------------VTDDILDNRICLKK 357
            L+ L+ ++SG+      LR+     ++EIE +++         +DP          GL+P AF+ERNEA +R  V  D   V  +Y  V++AA+ L +AV +DF   PR              +  DI +N + +K+
Sbjct:  713 LMTLLEYESGLAGDPNSLRDRCHEAIKEIEAIISPIHHSSWSELDPSAIDCITDFGGLVPRAFFERNEATWRGRVQPDV--VLKSYTDVQRAAELLGEAVAKDFWQTPRQDLEGNPDTTSKSLIAQDIFNNILAMKE 847
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BLAST of mRNA_S-ischiensis_contig85.20145.1 vs. uniprot
Match: A0A7S2P1T4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P1T4_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.770e-5
Identity = 35/95 (36.84%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:   13 LLALVGHQSGIDAREGQLRESLQRVVREIEGVVAREGQEDSVTVDPDGLIPDAFWERNEAPFRASVSRDNKKVGLAYRKVEQAAQQLIKAVGEDF 297
            +L L+  +SG+ A    LR      V +I+ VV  E      + D   +IP A++ERNE P+R  VSR   K+  +Y+ VE AA +L   V  DF
Sbjct:  231 MLELLIFESGLSAEPHSLRSRCFDCVTKIKSVVMTEKDLGDPSSDFGDIIPKAYFERNEEPWRGRVSRQ--KMLNSYQSVEDAAHELADCVARDF 323
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CI19_9STRA1.040e-956.25AP2/ERF domain-containing protein n=1 Tax=Tribonem... [more]
B7FRE1_PHATC1.290e-629.20Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2P1T4_9STRA2.770e-536.84Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:373911..378064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size383
Cds size381
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20145.1prot_S-ischiensis_contig85.20145.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 373911..378064 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817342.4012532-CDS-S-ischiensis_contig85:373910..3739791622817342.4012532-CDS-S-ischiensis_contig85:373910..373979Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 373911..373979 -
1695741041.731334-CDS-S-ischiensis_contig85:373910..3739791695741041.731334-CDS-S-ischiensis_contig85:373910..373979Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 373911..373979 -
1622817342.4160967-CDS-S-ischiensis_contig85:374788..3749111622817342.4160967-CDS-S-ischiensis_contig85:374788..374911Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 374789..374911 -
1695741041.7447314-CDS-S-ischiensis_contig85:374788..3749111695741041.7447314-CDS-S-ischiensis_contig85:374788..374911Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 374789..374911 -
1622817342.4298694-CDS-S-ischiensis_contig85:376381..3765131622817342.4298694-CDS-S-ischiensis_contig85:376381..376513Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 376382..376513 -
1695741041.7546625-CDS-S-ischiensis_contig85:376381..3765131695741041.7546625-CDS-S-ischiensis_contig85:376381..376513Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 376382..376513 -
1622817342.443087-CDS-S-ischiensis_contig85:378007..3780641622817342.443087-CDS-S-ischiensis_contig85:378007..378064Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 378008..378064 -
1695741041.7638502-CDS-S-ischiensis_contig85:378007..3780641695741041.7638502-CDS-S-ischiensis_contig85:378007..378064Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 378008..378064 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20145.1

>prot_S-ischiensis_contig85.20145.1 ID=prot_S-ischiensis_contig85.20145.1|Name=mRNA_S-ischiensis_contig85.20145.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=127bp
LLPHLLALVGHQSGIDAREGQLRESLQRVVREIEGVVAREGQEDSVTVDP
DGLIPDAFWERNEAPFRASVSRDNKKVGLAYRKVEQAAQQLIKAVGEDFS
ANPRDVTDDILDNRICLKKRHAAAKAN
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mRNA from alignment at S-ischiensis_contig85:373911..378064-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20145.1 ID=mRNA_S-ischiensis_contig85.20145.1|Name=mRNA_S-ischiensis_contig85.20145.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4154bp|location=Sequence derived from alignment at S-ischiensis_contig85:373911..378064- (Schizocladia ischiensis KU_0333)
CTGCTCCCGCACTTGCTGGCGTTGGTCGGGCACCAGAGCGGGATAGACGC
CAGGGAGGTGGGGTCTAGTTAGCCCAAGTAGGAGACTTCATTTCATATTG
TCCAAGTAGTTAGGAGAGACGCTGTAGGGGGAGTCCGAGGTGTAGCCAAG
TTGCTTTTTAAACACTGGAGTTGGATAGACCAGGGTTGGCACTTAACCCC
TAAGTGGTGCACTTTTACGAGTAGGCCCTTAATTAGAGGTAGCTAGGGGT
AATTATACCTAAAATCAAGGCTAATTAGGGCCTACTTTAGTTCACCTCTA
AGCGCAAACCCTGGGATAGACGCCAAGGGAGGGAGGGGAGACGCCGTTGC
AGACAATGTGATGTCTAGCCAAGTTGTCTCGCGGACGCCCGATTTGGATA
ACTGCTCTAGAGTACATATTTATACTGTGCTGCATTCTGCACGCTGCATC
TGATCCGCCTCGACCGAGGCGCGGGGTCAATGGTCTCGGGACTACGGCAA
GCACCACGTGAGTACATAGTATATGTATATATATATGTGCATCTGATGTG
ATGTGATGTGATGGCAAACTGCAGCACTTCCGGAAATAGAGTACCCTACT
GCAGAGTAATTGTCACATCACATCACATGAGTTATTCGATGCCAAACTAC
TGTAGTTTCCTCACACACGCACCTCTTCCCTGGCGAGCTAGGAGTAAGGA
AGGCGTTCACCACTGTTGAGGTCTTTGACTCTTTAGTGACGTGGCCTGCA
CCGCTCGCCCTGTGCTTCTCCTGTTCATAGTGTAGTTTTGAGTGCAGATC
ACATCACATCACATCACATCACGAGGCAATAAATAACCTGCTATTGTACT
GTGTTGCCCACAACATCTCCGAGAGCACTCACTTTCACGCGCAATATTGG
TGAGATTGCATTCTGCTCGTCGACATTGATTCGAAATTGCCGTCTGATGT
GATGTGATGTCTACTCTAATGCACTGTAGTTTGACATCACATCACATCAC
ATCACATCTATCTGTAGGAGCACACTCACTCTCTCGCGCAATATAGGTGA
GATTGTAGAGCTATTGACTTGAATCCCCGCCTTTCACCTTTCGTACATGT
GCAGCATGTGTACTCATTGGCTTGTTTCGCGACATAACCTCTTAACTACT
TGGGTATCCCGAAATTCAATCCGCTAACTACTTGGGTTCTGGATACTCAA
GTCTCTTAACTACTTGGGTATCCCGAAATTCAATCCGCTAACTACTTGGG
TTCTCGCGAAATTCAATCCGCTAACTACTTGGGTTCTGGATACTCCAGTC
TCTGAACTACTTGGGTATCCTGAAATTCAATGCGCTGACTACTTGGGTTC
TCGAAACTCAAGTCTCCCAACTACTACAGTAGCGCTATACCCCTCTTAAC
TACTGGGGTATCCTGAAACTCAATCCGCTAACTGCTTGGGTTGTCGAAAC
TCAAGTTTGAAGTCCCCAACTTAAAAGAGTATTTTCCTGTTAACTGCAGT
AGAGCTAAGTTATACCTCGTTGCGATTGACTTGAATCCTTGCCTCTTACA
GGGCCAGCTGAGGGAGAGCTTGCAGCGGGTTGTGCGTGAGATCGAAGGCG
TTGTGGCTCGCGAGGGCCAGGAGGACTCCGTGACCGTGGACCCGGATGGG
CTCATCCCAGACGCCTTCTGGGAGCGAAATGAGGTAAATACTCTGGTGTG
ATGTGATTTGATATGAGTTGCACTCTAATATTCAGTAGTTTGACATCACA
TCACATGATATGCTGCGATGTGATGTGATGTGATGTGACTCATCTCAGAC
CCCTTCTGGGAGCGAAATGAGGTACGATGGTGGGATGTGATTTGATATAG
GTTGCACTCTAGCGGCCAGTAGTTTGACAGTGCATCATATCACATGATGC
GATGTGATGCAATGTGATGTCATGTGACTCATCCCAGACGCCTTCTGGGA
GCGAAACGAGGTTAAGTACTCTGGTGCGATGCGATGTGGTTTGATATAAG
TTGCACTCTGAACTGCAGTATTTTGATATCACACTATGCAATGTGATGCG
ATAGGATGTGATGTGACTCATCCCAGACACCTTCTGGGAGCGAAACGACC
TAAGTACTCTGGTGTGATGGGATGTGATTTGATATACGTTGCACTCTAAT
GCTCAGTAGTTTGACATCACATGATGCGATGTGATGTGATGTGACTCATA
CCAGACGCCTTCTGGGAGCAAAATGAGGTACTCTGGTGCGATGTGATGTG
ATTCGATAGCACTCTAAAGTTGGTTTGATATCGCATGATGCGATGTGATG
TGATGTGACTCATCCCAGACGCCTTCTGGGAACGAAACGAGGTACTCTGG
CACGATGTGATGTGATGTCAATCTACAGTACGTTAGACAGTGCACATCAC
ATCACGTCACATCAGCCCCCCCATGCATTGCCCCATGTGTGTCGGTTGCT
TCTTTTTCTACTTTTTCGTGCCCTGCGAGTGAAAGAAGGGTTATCTCTTC
TGGTGAGGTCACCAGTTTGATGTGATGTGATGTCAAACTACAGTAAATTA
GAGTACACATCACATCACATCACGCTAGCGAGTGAAAGAAGGGTTAACTC
TTCTGGCGAGGTCCCCGGTGCGGGACGGGGCCCGGAAATCGCGAATCACA
TTTACTAGTACAAAGAGTAACTACAGTAGCATAAAGAGTTGATGGCCGGA
GAGAAAAATGGTCTGCCCCGTCTCTATCGAGGCACGTGGTCAATGGTCTC
GGGACTGCGGCAAGCACAACGTGAGTACATACTACGCGCAAGTACTCGTA
GTATAATAAAAAGAGTGAATGAATGTACAGAGTTATCCTGTTCCATCTCG
ACCGAGGCGCGTGGTCAATGGTCTCGGGACTACGGCAAGCACCACATGAG
TACATATATATAGTGACCGGAGAGAAAATGATCGTGCTCGTGCTGTTTGT
TGCAGGCCCCCTTTCGTGCCAGTGTATCGAGGGGGAACAGACGAGTGGGC
CTGGCCTACAGGAAGGTGGATGTACTAAGAAAGAGTTCAAAACCAGAAAC
ATAAATGCCCGTATTCTTTATTTTAGAAGAGTTAACTACTTCGTAGTACA
AAAGAGCTAATGACAAGAAACATAAATGTTTGTGTTCGTGCTGTTTGTTG
CAGGCTCCCTTTCGCGCCAGCGTGTCGAGGGACAACAAAAAAGTGGGCCT
GGCGTACAGGAAGGTGGAGCAGGCCGCACAACAGCTCATCAAGGCCGTGG
GGGAGGATTTTTCCGCCAACCCGAGGGTGAGTGAGCGAGTGCCGTACTTA
GCGACTGCGATTCTTATAACTTGAAACGAGGCACAATCGCACGTGTGTGA
GGTTGAGTGTTCTAGTGTTGGTGGTTATCCCCATTTAAGAATTGAATGTT
TTGGGGCGACGGTCGCCGGCCCCTCCTTGGCCAGACCGCACTACTGTACG
ACATCGGACAGTACGTACCGTACTATGGATATGCACAGTAGTCAAAGCAT
TTGAGGACTACCAACTATACTATACAGTGAAGTCGAAACCTCGGGTCCCT
AAGTCACTGTACTACTGTACAGTAGTAGTGCACATCCCGTACTTGTGTGT
TTCATTCTCGCAGGACGTCATGGACGACATCTTGGACAACGGTGAGTACT
ATGCACATATAGTCAAACCATTTGAGGACTACCAACTATGCTATACAGTG
AAGTCGACACTTCGGGTCCCCACGTCGCTGTACTACAGTAGTAGTGCACG
TACCGTACTTGTGTGTTTCATTATTTTTTCTTCAATCGATCGCGCAGGAC
GTCACGGACGACATCTCGGACAAGCGCATCTGATACTCGTACTTGCGTGT
TTCATTCTCTTTTCTTTTCTCCGATCGCGCTATATCTGTAGTAGTGCACA
TACTCGTACTCATACTTTGTGTTTTTCATTGTCGCAGGACGTCACGGACG
ACATCCTGGACAAGCGCATCTGATACTGGTACTTGTGTGTTTCATGCTCT
TTTCTTTTCTTTGATTTATCGCGCTATATATATAGTAGTGCTCATACTTG
TGTTTTCCGTTCTCTTTTCTTCTATGATTGCACAGGACGTCACGGATGAC
ATCTTGGACAACCGCATCTGCCTCAAGAAGAGGCACGCCGCCGCCAAGGC
GAAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:373911..378064-

>mRNA_S-ischiensis_contig85.20145.1 ID=mRNA_S-ischiensis_contig85.20145.1|Name=mRNA_S-ischiensis_contig85.20145.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=762bp|location=Sequence derived from alignment at S-ischiensis_contig85:373911..378064- (Schizocladia ischiensis KU_0333)
CTGCTCCCGCACTTGCTGGCGTTGGTCGGGCACCAGAGCGGGATAGACGC
CAGGGAGCTGCTCCCGCACTTGCTGGCGTTGGTCGGGCACCAGAGCGGGA
TAGACGCCAGGGAGGGCCAGCTGAGGGAGAGCTTGCAGCGGGTTGTGCGT
GAGATCGAAGGCGTTGTGGCTCGCGAGGGCCAGGAGGACTCCGTGACCGT
GGACCCGGATGGGCTCATCCCAGACGCCTTCTGGGAGCGAAATGAGGGCC
AGCTGAGGGAGAGCTTGCAGCGGGTTGTGCGTGAGATCGAAGGCGTTGTG
GCTCGCGAGGGCCAGGAGGACTCCGTGACCGTGGACCCGGATGGGCTCAT
CCCAGACGCCTTCTGGGAGCGAAATGAGGCTCCCTTTCGCGCCAGCGTGT
CGAGGGACAACAAAAAAGTGGGCCTGGCGTACAGGAAGGTGGAGCAGGCC
GCACAACAGCTCATCAAGGCCGTGGGGGAGGATTTTTCCGCCAACCCGAG
GGCTCCCTTTCGCGCCAGCGTGTCGAGGGACAACAAAAAAGTGGGCCTGG
CGTACAGGAAGGTGGAGCAGGCCGCACAACAGCTCATCAAGGCCGTGGGG
GAGGATTTTTCCGCCAACCCGAGGGACGTCACGGATGACATCTTGGACAA
CCGCATCTGCCTCAAGAAGAGGCACGCCGCCGCCAAGGCGAACGACGTCA
CGGATGACATCTTGGACAACCGCATCTGCCTCAAGAAGAGGCACGCCGCC
GCCAAGGCGAAC
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