mRNA_S-ischiensis_contig85.20143.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20143.1
Unique NamemRNA_S-ischiensis_contig85.20143.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:314578..315104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size529
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817340.5092-CDS-S-ischiensis_contig85:314577..3149251622817340.5092-CDS-S-ischiensis_contig85:314577..314925Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 314578..314925 +
1695741040.2550693-CDS-S-ischiensis_contig85:314577..3149251695741040.2550693-CDS-S-ischiensis_contig85:314577..314925Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 314578..314925 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817340.522354-UTR-S-ischiensis_contig85:314925..3151041622817340.522354-UTR-S-ischiensis_contig85:314925..315104Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 314926..315104 +
1695741040.2679157-UTR-S-ischiensis_contig85:314925..3151041695741040.2679157-UTR-S-ischiensis_contig85:314925..315104Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 314926..315104 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20143.1prot_S-ischiensis_contig85.20143.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 314578..314925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20143.1

>prot_S-ischiensis_contig85.20143.1 ID=prot_S-ischiensis_contig85.20143.1|Name=mRNA_S-ischiensis_contig85.20143.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=116bp
RGRRSAPCTWPLCIVRRCCCSFCAWPWRRCRPSPWRRHRHRHRRSWCRPL
LRLGPSPLRRLVGPRLAALRVSLQVFYISKQIDLFIDSIDLLRVRSSKYS
SIYLSKSTYLSTVLI*
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mRNA from alignment at S-ischiensis_contig85:314578..315104+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20143.1 ID=mRNA_S-ischiensis_contig85.20143.1|Name=mRNA_S-ischiensis_contig85.20143.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=527bp|location=Sequence derived from alignment at S-ischiensis_contig85:314578..315104+ (Schizocladia ischiensis KU_0333)
CGCGGTCGCCGAAGCGCGCCCTGTACCTGGCCACTCTGCATTGTGCGCCG
GTGCTGTTGCAGTTTCTGTGCGTGGCCATGGCGGCGCTGCAGGCCATCGC
CCTGGAGGAGGCACAGGCACAGGCACAGGCGGAGCTGGTGCAGGCCTCTG
CTCAGGCTGGGTCCGAGTCCTTTGCGGCGCTTGGTCGGGCCGCGGCTGGC
AGCGCTGCGTGTGTCACTGCAGGTCTTCTATATATCTAAGCAAATCGACC
TATTCATCGACAGTATTGATCTACTACGGGTACGTAGTTCGAAGTACAGT
AGTATATATCTAAGCAAATCAACCTATTTATCGACAGTATTGATCTGAAT
ATCTATCGGTGGTCGATATTCGATAGTTTGACCCACACTAAGTCCAAGTA
GTTAGTAGCGCCGCCCACAACATCAGTCGAGCCCGACAACTATCTACTGA
TCGATAGAACATCACTGCTGCAGGTGCCGCCCAGTTCCCCGCCAGCCCCG
ATCATCATGAGGATGCTGCGGGGCACG
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:314578..315104+

>mRNA_S-ischiensis_contig85.20143.1 ID=mRNA_S-ischiensis_contig85.20143.1|Name=mRNA_S-ischiensis_contig85.20143.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=696bp|location=Sequence derived from alignment at S-ischiensis_contig85:314578..315104+ (Schizocladia ischiensis KU_0333)
CGCGGTCGCCGAAGCGCGCCCTGTACCTGGCCACTCTGCATTGTGCGCCG
GTGCTGTTGCAGTTTCTGTGCGTGGCCATGGCGGCGCTGCAGGCCATCGC
CCTGGAGGAGGCACAGGCACAGGCACAGGCGGAGCTGGTGCAGGCCTCTG
CTCAGGCTGGGTCCGAGTCCTTTGCGGCGCTTGGTCGGGCCGCGGCTGGC
AGCGCTGCGTGTGTCACTGCAGGTCTTCTATATATCTAAGCAAATCGACC
TATTCATCGACAGTATTGATCTACTACGGGTACGTAGTTCGAAGTACAGT
AGTATATATCTAAGCAAATCAACCTATTTATCGACAGTATTGATCTGACG
CGGTCGCCGAAGCGCGCCCTGTACCTGGCCACTCTGCATTGTGCGCCGGT
GCTGTTGCAGTTTCTGTGCGTGGCCATGGCGGCGCTGCAGGCCATCGCCC
TGGAGGAGGCACAGGCACAGGCACAGGCGGAGCTGGTGCAGGCCTCTGCT
CAGGCTGGGTCCGAGTCCTTTGCGGCGCTTGGTCGGGCCGCGGCTGGCAG
CGCTGCGTGTGTCACTGCAGGTCTTCTATATATCTAAGCAAATCGACCTA
TTCATCGACAGTATTGATCTACTACGGGTACGTAGTTCGAAGTACAGTAG
TATATATCTAAGCAAATCAACCTATTTATCGACAGTATTGATCTGA
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