mRNA_S-ischiensis_contig85.20133.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20133.1
Unique NamemRNA_S-ischiensis_contig85.20133.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:256573..261812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue2.3e-08
Seed eggNOG ortholog157072.XP_008867204.1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-02_002030.1
Exons4
Model size1718
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20133.1prot_S-ischiensis_contig85.20133.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 257843..261781 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817341.8725383-UTR-S-ischiensis_contig85:256572..2578421622817341.8725383-UTR-S-ischiensis_contig85:256572..257842Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 256573..257842 -
1695741041.3562756-UTR-S-ischiensis_contig85:256572..2578421695741041.3562756-UTR-S-ischiensis_contig85:256572..257842Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 256573..257842 -
1622817341.9355707-UTR-S-ischiensis_contig85:261781..2618121622817341.9355707-UTR-S-ischiensis_contig85:261781..261812Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 261782..261812 -
1695741041.4171667-UTR-S-ischiensis_contig85:261781..2618121695741041.4171667-UTR-S-ischiensis_contig85:261781..261812Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 261782..261812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817341.8851602-CDS-S-ischiensis_contig85:257842..2578961622817341.8851602-CDS-S-ischiensis_contig85:257842..257896Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 257843..257896 -
1695741041.370588-CDS-S-ischiensis_contig85:257842..2578961695741041.370588-CDS-S-ischiensis_contig85:257842..257896Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 257843..257896 -
1622817341.897891-CDS-S-ischiensis_contig85:259825..2599581622817341.897891-CDS-S-ischiensis_contig85:259825..259958Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 259826..259958 -
1695741041.3804247-CDS-S-ischiensis_contig85:259825..2599581695741041.3804247-CDS-S-ischiensis_contig85:259825..259958Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 259826..259958 -
1622817341.9103994-CDS-S-ischiensis_contig85:261262..2614031622817341.9103994-CDS-S-ischiensis_contig85:261262..261403Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 261263..261403 -
1695741041.3930502-CDS-S-ischiensis_contig85:261262..2614031695741041.3930502-CDS-S-ischiensis_contig85:261262..261403Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 261263..261403 -
1622817341.9229646-CDS-S-ischiensis_contig85:261692..2617811622817341.9229646-CDS-S-ischiensis_contig85:261692..261781Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 261693..261781 -
1695741041.4036388-CDS-S-ischiensis_contig85:261692..2617811695741041.4036388-CDS-S-ischiensis_contig85:261692..261781Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 261693..261781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20133.1

>prot_S-ischiensis_contig85.20133.1 ID=prot_S-ischiensis_contig85.20133.1|Name=mRNA_S-ischiensis_contig85.20133.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=139bp
MGDIWQAARANNVPRIKKLLEEGVSPNKTRWSGVSPLHRAAEENACEVAH
VLIKAGADVDMKTAWGWFSPMHLACQRGHEEVAELLLKAGAKWTILDKRL
QSPYDLAAKAGLDEQALRIQLIARKVAAERRMLLHGRR*
back to top

mRNA from alignment at S-ischiensis_contig85:256573..261812-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20133.1 ID=mRNA_S-ischiensis_contig85.20133.1|Name=mRNA_S-ischiensis_contig85.20133.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5240bp|location=Sequence derived from alignment at S-ischiensis_contig85:256573..261812- (Schizocladia ischiensis KU_0333)
CGTGCAACGGGCAGCAGCTGCGACATGGGCGATGGGCGACATCTGGCAGG
CAGCCCGTGCGAACAATGTCCCACGCATCAAGAAGCTTCTTGAGGAGGGA
GTGAGCCCCAACAAGACCAGGTGAGAAGGCTACACGAGGTGTTTTGGCGC
AGCGTCTGAAACTCTTCGTAGAGCCAGGTCATGGGTGCACGCCAGGCTAA
ACGGTCTCGCACGGGGTTGCTGTGGTACCACTACCCACATCCCCGTCCCT
GCCACCCTCGGGCCCGCTGACCGACTTATCCGCTCGTTGACCCTAAGCAT
GAACAGGCCAACCCATGGCGTCCCCAACCTCGCATCACTGCAGCTGCTTC
GCAGCAGAGCAAGTAAGTTGCGCCAACCGTATGCCTCCGTTGCAACATCT
TGTACACAGGTGGAGTGGCGTGTCACCACTGCACAGGGCCGCGGAGGAAA
ACGCCTGCGAGGTGGCCCATGTTCTCATTAAGGCTGGGGCCGACGTGGAC
ATGAAGACGGCATGGGGCTGGTTCTCTCCCATGCATCTCGCCTGTCAACG
GTGAGTTTTCATACTTGGGAAGCAACTACTGTACTCCTCCTCCTCCATTT
CTCCCCTTCCCCACACAAACCTCCCCTGGCGAGCTAAGGAAGGGACAATG
TTGAGGTCTCTAGTGACGTGGCCTGCACCTCACCCTGTGTTGTTCCTGTC
AATACTGCATGCGCCAGCGGTGATCACTTGTTTCGATTGCGTTCACTATG
ACCAGGATACATTCATTATTGCCGTAATACGGAGCGGGCGCACGTAGTCA
GGGTGCAGGTAGCGTGCGGGGCTCACCCGCGGGGCACGGGAAATCGTCTG
CTTCCCCGTTGTTTCTACTCATACAATACGCTGCCCGACCGTTCACCACA
CTGTTTCGCGAGCGCAGTGCAGTGTGTGTAAGTATTGCAGTACCGGCGGA
GCATGTGCTCCAGTAGCTTCTGGAAACACAACGGCATTTGGTACTTCACG
CAGTAGTGGTAGTGACGCATTTTTTCTCGGACGTCTCGGGACTACGGCGA
GCGCAACGTGAGTGCTCGTGAGTGCTTGGAAGGATTTTGAAAATGTGTAC
CATGTGCACAGTGCAAATACAGCATCCTACCATGCAGGTAGTAGGCTATA
TACTTGTACTCTTGCCCCGGAAGTAGGTGCACCTAGCATGCTTGGAAAAA
TTTTGAACATGTGTACAATATGCGCAGTGCAAGTACAGTACCCTACAGTG
CAGTAGTACCGTTGTATACTTGTACCCGTGCCCCGCAAGTAAGCGCAGTA
GCTGTATAGTATAGACGTGCAGTCATATTGTGCTTGCCCTAGTCTGGAGA
CCATCTGTTCAAAACATCCGAGTAGTCAAGAGAGAGTTTCAAAGAGCCCA
AGTAGTTAGGTGACTTGGTTTCATGACATCCAAGCAGCTAGGAGACTATA
TACTACGTGTATATATACGAGTACTCTATGTGCTCAAGTTGTGCTTGCCC
TAGTCCGCAACCCATTGACCACGCGCCGCCGAGGGCGGGGCAATAGTACA
GTGTAGTATGTGCTCATAGCCAGTACACGAGTAAGTAGTATGAGCAGGCA
CAACACAGGGCGAGGTGCAGGCCACGTCACTAAAGACCTCAACAGTGGCC
CTTGCTTGGCTCACCAGGGGAGGTTTGTGTCGAGAAGGGGAGAAGGGGGA
GGAGGAGAAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGCAGGAGGAGGAGGGGGAGGGCAAGTAGCAAGTACGGTAGTACAGTAGT
AGCGTGACAGACTCCGCATACGTTGCTTTGGCACTTGGCTTTGTCGGCTG
GCAGGGGGCACGAGGAGGTTGCTGAGCTTCTGCTCAAGGCAGGGGCCAAG
TGGACTATTCTGGACAAACGCCTCCAATCGCCCTACGACCTGGCCGCGAA
GGCGGGCTTGGACGAGCAGGCCCTCCGTATTCAGCTGGTGAGACATGTAC
CGCAAATCGTCGGAGAGATTTTGAAGCCACAGGCCAATTTTTGGGGGACT
ATTTCTAGCCGAGAAGGTCCTGAATTGTCCTGAAAGCTCTCGGAAATGTT
CCCCCAGGCCCTGAGGGAGATTTTTCGAGTTTTCCTGCGTGAATCCGACC
AGTATTCGCCGAGAAAAATTCTATCGAAAATTGGCTTGTAGAGTACTCGT
ACACTTCCAGGAAGTACTTCTAACATACTTCGAAGTATTCATGAATATGT
GATCAAGCTTTGCCAGGGCAGGGGGGGGTCCTGCTCCGTCTCGACCGAGG
CGCGCGGTCAATGGTCTCAGGACTACGGCAAGCACCACTGAGTACATATG
TATACTACGAAGTTCGTACTAGCAATATATATACTACGTATATCAGGATG
GACTTGCGTGCATGTTTTTCGAACGGCATGCTGCGCATGTTTCCAAGTAC
ACCTTGAACTGCACTTGTGCTTGGTAATTCAATAAGTACTTGTCAAGTAT
TCGGTAAAGTGATTGCTAAGTATTCGGCAACGCACTCGCTAAGCGTTCAG
TAAAGTGTTTGTTTAGTATTCAGCCAGCACTTGTTAAGCATTCTGGAAAG
TACTACTTGCTAATTGGTCAGTAAAGCAGCTTCAGTAAAGCACTTGTTGA
TCAGTCGGTGAAGTGCCTGCTATTATTCAGTCAGTACGTGTTCAGCATTC
AGGAAACTACTCGCTAGGTAGGCAGCAAAGCACTTGTTGGTCATTCAGTG
ACATGCTTGTTAATATTCAGGCAGTACGTGCCAAGCATTCTGTAAAGTAC
TTCCAAGTTTTCCCCCCACCCCTTCCCCCTCCTCCTCCTCCCCCTTCCTC
CCCCTCCCCGTCCACCTGCCCTTCCTCACACAAACCTTTCCCCTGGCGAG
CTAGGGAAGGGCCATTGTTGAGGTCTCTAGCGACGTGGCCCGCACCTCGC
CCCGTGTTGTTCCTTACTTCCAAGTGCTTGTTAACCCTTTTACCCCTGGG
GTCCAAATAGTCATAGGTTTTAGTGTGTAGGTCCATTTTAACAGGGGCAA
AAGGGTTCAGTATTCATGCGCACAAGGACAGTGTGAGTTGGCGTGGCCAT
GCCAAGTGCTTAGTTGCACTCATGCTCATGGTTGCCCTGCCGGAGGGTTG
TGGGGGGGGGGAACTGCCAGGTTTCGGCATCCAAAGGGAAGACGAAACCG
GAGGTTTGTGGAGCGAAGAATAGTTAACAGGCGGCCAGGGGTGGGTGAGG
TGCAGACTATAAAGGTATGTGGTCACCTGGCTCGTGCGCGGTATACACCG
GGGCATTTGCTCACACCCTTTGGTTTACGTGCGCTCCCACAGGTGTGTTG
TGAGCTCGGAGATCGTGTCTGGTCTAGCCCCCGCCTGCCCTACCCGCATG
CCCCACTGTGAGCACAAGAGACTCCCCTTCCCCGCCCCTTCCTTTTCCCT
GCCCCGCCTAGTTGCTTCTTTATATTTTATATCCTTTTTGCCCTGCGAGG
GGAAGAAGGGCTTCGTTGAGTTCCGTTTCGGGACGAGCCTTTTGGCACGG
GGCCTGCCACTCGCCGCTTATCCACCACTCAAAATAGGGCTGGCGGGGCT
TGGGGTGGTTGAGAGGCCGGTGACTGCGACCGTGACTGCCGCGGGGAGCA
GGCCTCCTCTACGGGTTGGTAGCCGGGGGCGAGCCAGCCAGATACCGCCG
CAACGAGGGGACACTGACGGCGTGGCGCGAGCCGCTCCAGATTCTTTTTT
TCTCCAAGACTGCCCTGTCTCTGGGTTTCTCTTGGTTTAAGGGGACGACC
TATACTGTACCTCAAAATTTTGTTTCCTCTCTTCTTCTCACCCGCCCCCC
CCCCCTTCCGCTCTCCCCACCCGTGGAACTGTTGATGGTGATCCTGCTGC
TGTTCCCATGAGACAGATAGCCCGCAAGGTAGCAGCGGAGCGCAGGATGC
TGCTTCACGGTCGCCGATGACATGGGTATCACGTGCCGCTGCCAAGGTTC
ACCGGTGACAACCACTGTGGCCAACGGCCATGATGATGATGGTGATGGTG
GTGGCAATGGGGTCAACCCAGTTCTGGCCGCACAGCATTGTAGGTGTACA
GTACTTCCCCTTGAAATGGCACTGTACAATTGTAGAAGTACAGTACCTCC
TGAGTTCATACAGTAGTTCAAGCGACCTCCGTGCAGTCCTTGCGATTGCT
TACACTGTAGGGCAATGCACAGTACTAACCGGGAAAACACAGGGCTATTT
TCGGTGTGGGCCACGCTTCTAAAGACCTCAATAGTGGTAAACGCGTTCCT
TAGGTCGCCAGGGGAGACGTGTGTGGGCCATGTACAGTAACGCACACCAT
TCGGGTCCTCCTCCCCCTCCTCCTTTTCTCCGCTTCCCCACACAAACTTC
CCCTGGCGAGCTATAGGGAAGGGCCACTGTTGAGGTCTTTAGTGATGTGG
CCTGCACCTCGCCCTGCGTTGTTCCTGTCAATGCAGCAGCCGCGCAGCAA
TAGCCATGACCGTGTCCAGAGCCGGAGATATTCCGACTGCCAACATGCAC
GTGTGGCTCGGGCTCCAAGAGTGTAAAATAAATGGGGGTGTCACATTGCG
GACCCCCGTAGGCACAGGGTTGTGATACCGTACTTGGTTTAATGCCGAAA
ATGCGAGGCGGCGCAGCGGCAATGAATTTTCCAAAAAGATTCACCACCTG
TAGATGTATGTATGGCTTGACTAGTTGCCACCTTGGATCTGACTGACATG
GTGCACGGGTACCGGGCCGTAGTCACGGAGCGGCTGCTGTACAGTCAGCA
AGGTACAGTACAATATACTGTAGTAAGGTACAGTACAGTACGGTACCGTA
CAGTCCTGTACAGTGCAGTACAACACAGTACAGCAAGGTACAGTATAGTA
CAATACAGCTAGATACAGTACAGTACAGCAATGGTACAGTACAATACAGC
ACAGTATTCATGTCCTAGTATTGTGAGCGGGTTCTCTGGAAGCTGCTTGC
TAGGTCTCGATTTGCTGGGTGTGACGAGAGTCACAAGTGGGTTGCGGGCG
TCCTCCTGGAAGGGGCGAGAGCAGGTCGGGTGACGGCTCTCGAAGGCTCT
CGCACGGGCGACCGCAGGTGGCGTCGGCCTCGGGGTTTCCCGTAGGGACC
GAGGCGTCGGCCCAGCCTCTAGACGGTAACGGCAGGTGGGATCACCCGAT
CCTCACAGTATGTGCACCACTATGTATTATCGTTTGTTTC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig85:256573..261812-

>mRNA_S-ischiensis_contig85.20133.1 ID=mRNA_S-ischiensis_contig85.20133.1|Name=mRNA_S-ischiensis_contig85.20133.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=834bp|location=Sequence derived from alignment at S-ischiensis_contig85:256573..261812- (Schizocladia ischiensis KU_0333)
ATGGGCGACATCTGGCAGGCAGCCCGTGCGAACAATGTCCCACGCATCAA
GAAGCTTCTTGAGGAGGGAGTGAGCCCCAACAAGACCAGATGGGCGACAT
CTGGCAGGCAGCCCGTGCGAACAATGTCCCACGCATCAAGAAGCTTCTTG
AGGAGGGAGTGAGCCCCAACAAGACCAGGTGGAGTGGCGTGTCACCACTG
CACAGGGCCGCGGAGGAAAACGCCTGCGAGGTGGCCCATGTTCTCATTAA
GGCTGGGGCCGACGTGGACATGAAGACGGCATGGGGCTGGTTCTCTCCCA
TGCATCTCGCCTGTCAACGGTGGAGTGGCGTGTCACCACTGCACAGGGCC
GCGGAGGAAAACGCCTGCGAGGTGGCCCATGTTCTCATTAAGGCTGGGGC
CGACGTGGACATGAAGACGGCATGGGGCTGGTTCTCTCCCATGCATCTCG
CCTGTCAACGGGGGCACGAGGAGGTTGCTGAGCTTCTGCTCAAGGCAGGG
GCCAAGTGGACTATTCTGGACAAACGCCTCCAATCGCCCTACGACCTGGC
CGCGAAGGCGGGCTTGGACGAGCAGGCCCTCCGTATTCAGCTGGGGGCAC
GAGGAGGTTGCTGAGCTTCTGCTCAAGGCAGGGGCCAAGTGGACTATTCT
GGACAAACGCCTCCAATCGCCCTACGACCTGGCCGCGAAGGCGGGCTTGG
ACGAGCAGGCCCTCCGTATTCAGCTGATAGCCCGCAAGGTAGCAGCGGAG
CGCAGGATGCTGCTTCACGGTCGCCGATGAATAGCCCGCAAGGTAGCAGC
GGAGCGCAGGATGCTGCTTCACGGTCGCCGATGA
back to top