|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 1229 |
| Cds size | 912 |
| Stop | 0 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817340.374756-UTR-S-ischiensis_contig85:245263..245578 | 1622817340.374756-UTR-S-ischiensis_contig85:245263..245578 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig85 245264..245578 + |
| 1695741040.208856-UTR-S-ischiensis_contig85:245263..245578 | 1695741040.208856-UTR-S-ischiensis_contig85:245263..245578 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig85 245264..245578 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817340.3857198-CDS-S-ischiensis_contig85:245578..246490 | 1622817340.3857198-CDS-S-ischiensis_contig85:245578..246490 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig85 245579..246490 + |
| 1695741040.2189372-CDS-S-ischiensis_contig85:245578..246490 | 1695741040.2189372-CDS-S-ischiensis_contig85:245578..246490 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig85 245579..246490 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig85.20130.1 >prot_S-ischiensis_contig85.20130.1 ID=prot_S-ischiensis_contig85.20130.1|Name=mRNA_S-ischiensis_contig85.20130.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=304bp
MAFAQWPNGIPHLHAAASTGDVESLKYLLRVGLDKHAQHNGNTALHVAAN
AGHVAVVRALLEAGADTEIRDTGGNTALHLASFTGNVAVVRTLLDAGADK
DARASKARTPLHLAAITGNVAIARALLEAGAHKDAKGDNRCDTPLHAAAM
MGHAPCARALLEAGAATTARSAPRECTPLHLACRHARPGCVLELLRRGAD
PLAQEGGGGGHGWARDRSPLHVVGLGASELEDQVGVGLDCAEDEQVEEAG
GELEGPDASAEQVRARNFIRRALRAEVRWRRRRVLVLLRARLAAGPGGSS
AAGA back to topmRNA from alignment at S-ischiensis_contig85:245264..246490+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig85.20130.1 ID=mRNA_S-ischiensis_contig85.20130.1|Name=mRNA_S-ischiensis_contig85.20130.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1227bp|location=Sequence derived from alignment at S-ischiensis_contig85:245264..246490+ (Schizocladia ischiensis KU_0333)
TGGACATTGCAGTGGGTCTCCTGGGCGACACGGCCGCCGGCTGGCCTGGG
CCCTTCCTCCGCCTCCTCTCCCTCCTGCGCCTCCCCTAGCCCTCCTTCTC
CCCTCCCACTGCTTTGCATTTCTGCTTGGCGAGTACAAGGCGACTGCCTC
AACTGAAGTATACAAGTGTGTGGGGCGCACCTAACAACGAAGGTTGCAAA
CGGAACTGTTTCTGCGGGGAGGGTTTTGGCGTACGGTGGGAGAGCCGTGT
CAACCGGCGGCTTTCCTATCACTAGCGGTTGTGGGTAAGGCAAGCAACGG
GCAGGGAAGAGACCAATGGCATTTGCGCAGTGGCCCAATGGCATCCCCCA
TCTGCACGCTGCAGCCTCCACCGGCGACGTGGAGTCCTTGAAGTACCTAC
TCAGGGTTGGGCTGGACAAACACGCCCAACACAACGGCAACACCGCGCTC
CACGTCGCAGCCAATGCGGGCCACGTCGCTGTCGTCCGGGCCCTCCTCGA
GGCCGGGGCCGACACGGAGATCCGGGACACCGGCGGCAACACCGCCCTCC
ACCTGGCCTCATTCACGGGGAATGTCGCGGTCGTCCGGACGCTCCTCGAC
GCCGGGGCCGACAAGGACGCCAGGGCGAGCAAAGCGCGCACGCCGCTCCA
CCTCGCCGCCATCACCGGGAACGTCGCCATCGCCCGGGCCCTGCTCGAGG
CCGGCGCGCACAAGGACGCCAAGGGAGACAACCGCTGCGACACCCCGCTG
CACGCCGCGGCCATGATGGGCCACGCCCCGTGCGCCCGCGCCCTGCTCGA
GGCCGGGGCGGCCACGACCGCCCGGAGCGCCCCTCGAGAGTGCACGCCCC
TTCACCTGGCCTGCCGCCACGCGAGGCCGGGCTGCGTCCTAGAGCTCCTT
CGGCGAGGGGCGGACCCGCTGGCGCAGGAGGGAGGAGGAGGAGGCCACGG
GTGGGCGCGCGACCGAAGCCCCTTGCACGTCGTCGGCCTCGGCGCCAGCG
AGCTAGAAGACCAGGTGGGAGTAGGGCTTGACTGCGCCGAGGACGAACAA
GTCGAGGAAGCAGGGGGGGAGCTCGAAGGGCCGGATGCATCTGCGGAACA
GGTTCGGGCGCGCAACTTCATCCGCCGCGCTCTGCGGGCGGAGGTGCGGT
GGCGGCGCCGGCGGGTGTTGGTGTTGCTCAGGGCCCGGCTGGCGGCCGGC
CCGGGCGGCTCGAGCGCAGCTGGGGCG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig85:245264..246490+ >mRNA_S-ischiensis_contig85.20130.1 ID=mRNA_S-ischiensis_contig85.20130.1|Name=mRNA_S-ischiensis_contig85.20130.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1824bp|location=Sequence derived from alignment at S-ischiensis_contig85:245264..246490+ (Schizocladia ischiensis KU_0333)
ATGGCATTTGCGCAGTGGCCCAATGGCATCCCCCATCTGCACGCTGCAGC
CTCCACCGGCGACGTGGAGTCCTTGAAGTACCTACTCAGGGTTGGGCTGG
ACAAACACGCCCAACACAACGGCAACACCGCGCTCCACGTCGCAGCCAAT
GCGGGCCACGTCGCTGTCGTCCGGGCCCTCCTCGAGGCCGGGGCCGACAC
GGAGATCCGGGACACCGGCGGCAACACCGCCCTCCACCTGGCCTCATTCA
CGGGGAATGTCGCGGTCGTCCGGACGCTCCTCGACGCCGGGGCCGACAAG
GACGCCAGGGCGAGCAAAGCGCGCACGCCGCTCCACCTCGCCGCCATCAC
CGGGAACGTCGCCATCGCCCGGGCCCTGCTCGAGGCCGGCGCGCACAAGG
ACGCCAAGGGAGACAACCGCTGCGACACCCCGCTGCACGCCGCGGCCATG
ATGGGCCACGCCCCGTGCGCCCGCGCCCTGCTCGAGGCCGGGGCGGCCAC
GACCGCCCGGAGCGCCCCTCGAGAGTGCACGCCCCTTCACCTGGCCTGCC
GCCACGCGAGGCCGGGCTGCGTCCTAGAGCTCCTTCGGCGAGGGGCGGAC
CCGCTGGCGCAGGAGGGAGGAGGAGGAGGCCACGGGTGGGCGCGCGACCG
AAGCCCCTTGCACGTCGTCGGCCTCGGCGCCAGCGAGCTAGAAGACCAGG
TGGGAGTAGGGCTTGACTGCGCCGAGGACGAACAAGTCGAGGAAGCAGGG
GGGGAGCTCGAAGGGCCGGATGCATCTGCGGAACAGGTTCGGGCGCGCAA
CTTCATCCGCCGCGCTCTGCGGGCGGAGGTGCGGTGGCGGCGCCGGCGGG
TGTTGGTGTTGCTCAGGGCCCGGCTGGCGGCCGGCCCGGGCGGCTCGAGC
GCAGCTGGGGCGATGGCATTTGCGCAGTGGCCCAATGGCATCCCCCATCT
GCACGCTGCAGCCTCCACCGGCGACGTGGAGTCCTTGAAGTACCTACTCA
GGGTTGGGCTGGACAAACACGCCCAACACAACGGCAACACCGCGCTCCAC
GTCGCAGCCAATGCGGGCCACGTCGCTGTCGTCCGGGCCCTCCTCGAGGC
CGGGGCCGACACGGAGATCCGGGACACCGGCGGCAACACCGCCCTCCACC
TGGCCTCATTCACGGGGAATGTCGCGGTCGTCCGGACGCTCCTCGACGCC
GGGGCCGACAAGGACGCCAGGGCGAGCAAAGCGCGCACGCCGCTCCACCT
CGCCGCCATCACCGGGAACGTCGCCATCGCCCGGGCCCTGCTCGAGGCCG
GCGCGCACAAGGACGCCAAGGGAGACAACCGCTGCGACACCCCGCTGCAC
GCCGCGGCCATGATGGGCCACGCCCCGTGCGCCCGCGCCCTGCTCGAGGC
CGGGGCGGCCACGACCGCCCGGAGCGCCCCTCGAGAGTGCACGCCCCTTC
ACCTGGCCTGCCGCCACGCGAGGCCGGGCTGCGTCCTAGAGCTCCTTCGG
CGAGGGGCGGACCCGCTGGCGCAGGAGGGAGGAGGAGGAGGCCACGGGTG
GGCGCGCGACCGAAGCCCCTTGCACGTCGTCGGCCTCGGCGCCAGCGAGC
TAGAAGACCAGGTGGGAGTAGGGCTTGACTGCGCCGAGGACGAACAAGTC
GAGGAAGCAGGGGGGGAGCTCGAAGGGCCGGATGCATCTGCGGAACAGGT
TCGGGCGCGCAACTTCATCCGCCGCGCTCTGCGGGCGGAGGTGCGGTGGC
GGCGCCGGCGGGTGTTGGTGTTGCTCAGGGCCCGGCTGGCGGCCGGCCCG
GGCGGCTCGAGCGCAGCTGGGGCG back to top
|