mRNA_S-ischiensis_contig85.20127.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig85.20127.1 vs. uniprot
Match: A0A6U2IMZ4_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2IMZ4_HEMAN) HSP 1 Score: 115 bits (289), Expect = 1.030e-28 Identity = 55/109 (50.46%), Postives = 76/109 (69.72%), Query Frame = 2
Query: 179 AVALGAAAGAVLRHLVSSSVSQPK-RPWAVCGINVLGSFTLGALSAHSPLPPQAKLLLGTGLCGGFTTFSTYSLDALNMLQKGRLVSFLLYATLNNAGGVGGAGLGAWL 502
AV GA GA+ R+ +S ++ K +PW + GINV GSF LG++ A +PL P +KLL+GTG CG FTTFST+S+DAL M++ G++ L Y +NN GG+G A +G WL
Sbjct: 45 AVGGGAVVGAIARYEISELAARAKVKPWGIAGINVAGSFVLGSVVASAPLSPASKLLIGTGFCGAFTTFSTFSVDALTMIEAGKMRMALQYMAINNIGGIGAAAVGMWL 153
BLAST of mRNA_S-ischiensis_contig85.20127.1 vs. uniprot
Match: A0A7S2SIN3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIN3_9STRA) HSP 1 Score: 103 bits (256), Expect = 7.450e-24 Identity = 54/122 (44.26%), Postives = 75/122 (61.48%), Query Frame = 2
Query: 167 GDMGAVALGAAAGAVLRHLVSS-SVSQPKRPWAVCGINVLGSFTLGALSAHSPLPPQAKLLLGTGLCGGFTTFSTYSLDALNMLQKGRLVSFLLYATLNNAGGVGGAGLGAWLVMRQASGMP 529
GD AVA+GA GA+LRH VS + + PW + +NV GS LG+L+A L P+ + LLG G CG FTTFST+S+D + +++ GR S L Y +NN G +GGA +G L+ +P
Sbjct: 3 GDAVAVAVGAVVGALLRHSVSDFATHRGLSPWHIAAVNVAGSTALGSLAAAPGLDPRTRSLLGVGFCGAFTTFSTFSVDVVKLVESGRYASALGYVAVNNVGSIGGAYVGMRLLPLALKALP 124
BLAST of mRNA_S-ischiensis_contig85.20127.1 vs. uniprot
Match: A0A7S4A3L6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3L6_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 8.170e-20 Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = 2
Query: 170 DMGAVALGAAAGAVLRHLVSSSVSQPK-RPWAVCGINVLGSFTLGALSAHSPLPPQAKLLLGTGLCGGFTTFSTYSLDALNMLQKGRLVSFLLYATLNNAGGVGGA 484
D AVA GA GA+ RH ++ +Q PW + GIN +GS LGA++A +PLPP AKL +G G CG FTTFST+S+D + M++ + Y +NN G VG A
Sbjct: 4 DALAVACGAVCGALARHNLALIATQHALAPWHIAGINTVGSGVLGAVAA-APLPPAAKLCVGVGACGAFTTFSTFSMDVVTMIEAEQFAKAAAYVGVNNVGSVGAA 108
BLAST of mRNA_S-ischiensis_contig85.20127.1 vs. uniprot
Match: B1Z753_METPB (Putative fluoride ion transporter CrcB n=19 Tax=Methylobacteriaceae TaxID=119045 RepID=B1Z753_METPB) HSP 1 Score: 87.4 bits (215), Expect = 3.120e-18 Identity = 50/117 (42.74%), Postives = 72/117 (61.54%), Query Frame = 2
Query: 182 VALGAAAGAVLRHLVSSSVSQ--PKRPWAVCGINVLGSFTLGALSAHSPL---PPQAKLLLGTGLCGGFTTFSTYSLDALNMLQKGRLVSFLLYATLNNAGGVGGAGLGAWLVMRQA 517
V LGA G VLRH V+ + + PW GIN+LGS +G ++ L PPQA+L + TG+ GGFTTFST+SL+A ++++G ++ L Y ++ G+GG L A +VMR A
Sbjct: 6 VFLGAGLGGVLRHGVNLAAVRLGSSFPWGTLGINILGSVLMGVVTGWMALRGGPPQARLFVATGILGGFTTFSTFSLEAFTLMERGDWMAALAYILVSVLAGIGGLAL-ALIVMRHA 121
BLAST of mRNA_S-ischiensis_contig85.20127.1 vs. uniprot
Match: A0A7S0FSJ6_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FSJ6_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 3.170e-18 Identity = 60/155 (38.71%), Postives = 76/155 (49.03%), Query Frame = 2
Query: 170 DMGAVALGAAAGAVLRHLVSSSVSQ-----PKR-----PWAVCGINVLGSFTLGALSAHSP---------------------------LPPQAKLLLGTGLCGGFTTFSTYSLDALNMLQKGRLVSFLLYATLNNAGGVGGAGLGAWLVMRQASG 523
D A+ +GA GA+ RH V SV++ PKR W GINVLGSF LG + A SP L +AKLL+G G CG FTTFSTYS+D +NM+ +G L Y +NN GG+ A G LV + +G
Sbjct: 51 DAAAIGVGAVCGALCRHHVGQSVTKQIAKDPKRFGHLTGWHTAGINVLGSFVLGGVFA-SPVVXXXXXXXXXXXXXXXAASKVPTSFGLTARAKLLMGVGFCGSFTTFSTYSVDIVNMIGRGEAARALGYVAVNNVGGISAAAAGMLLVRKLIAG 204
BLAST of mRNA_S-ischiensis_contig85.20127.1 vs. uniprot
Match: A0A514KJ15_9HYPH (Putative fluoride ion transporter CrcB n=1 Tax=Methylorubrum populi TaxID=223967 RepID=A0A514KJ15_9HYPH) HSP 1 Score: 86.3 bits (212), Expect = 8.600e-18 Identity = 50/117 (42.74%), Postives = 71/117 (60.68%), Query Frame = 2
Query: 182 VALGAAAGAVLRHLVSSSVSQ--PKRPWAVCGINVLGSFTLGALSAHSPL---PPQAKLLLGTGLCGGFTTFSTYSLDALNMLQKGRLVSFLLYATLNNAGGVGGAGLGAWLVMRQA 517
V LGA G VLRH V+ + + PW GIN+LGS +G ++ L PPQA+L + TG+ GGFTTFST+SL+A ++++G + L Y ++ G+GG L A +VMR A
Sbjct: 6 VFLGAGLGGVLRHGVNLAAVRLGSSFPWGTLGINILGSVLMGVVTGWMALRGVPPQARLFVATGILGGFTTFSTFSLEAFTLMERGDWMVALAYVFVSVLAGIGGLAL-ALIVMRHA 121
BLAST of mRNA_S-ischiensis_contig85.20127.1 vs. uniprot
Match: A0A2R6ETB8_9EURY (Putative fluoride ion transporter CrcB n=2 Tax=unclassified Halobacteriales TaxID=38063 RepID=A0A2R6ETB8_9EURY) HSP 1 Score: 85.5 bits (210), Expect = 1.520e-17 Identity = 48/110 (43.64%), Postives = 71/110 (64.55%), Query Frame = 2
Query: 182 VALGAAAGAVLRHLVSSSVSQPKRPWAVCGINVLGSFTLGALSAHSPLPPQAKLLLGTGLCGGFTTFSTYSLDALNMLQKGRLVSFLLYATLNNAGGVGGAGLGAWLVMR 511
V +G A GAVLRHLV V+ + P + +NV+GSF LG ++ S + + LL+GTG+CG FTTFS++S+D + + + R + L YA N AGG+ GL AW+++R
Sbjct: 9 VGIGGAVGAVLRHLVGLLVADDRLPVSTLTVNVVGSFALGGVTFLS-VGSELLLLVGTGVCGAFTTFSSFSVDVVRLWEANRHRAALGYAAANTAGGLLAVGL-AWVLVR 116
BLAST of mRNA_S-ischiensis_contig85.20127.1 vs. uniprot
Match: A0A7S0LX37_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LX37_9CRYP) HSP 1 Score: 86.3 bits (212), Expect = 1.690e-17 Identity = 48/106 (45.28%), Postives = 63/106 (59.43%), Query Frame = 2
Query: 179 AVALGAAAGAVLRHLVSSSVSQ-PKRPWAVCGINVLGSFTLGALSAHSPLPPQAKLLLGTGLCGGFTTFSTYSLDALNMLQKGRLVSFLLYATLNNAGGVGGAGLG 493
AV GAAAGA+LR ++ + PW+ GIN+ GSF LGA ++ + LL+GTG CG FTT S++SLD L MLQKG + + NA +G AGLG
Sbjct: 35 AVCTGAAAGALLRWRITEEAKRYGMNPWSTMGINICGSFILGACASRNFQNSHIPLLVGTGFCGSFTTLSSFSLDVLTMLQKGHHARAGVLIFVTNAASLGAAGLG 140
BLAST of mRNA_S-ischiensis_contig85.20127.1 vs. uniprot
Match: A0A1Y4AN98_9BACE (Putative fluoride ion transporter CrcB n=1 Tax=Bacteroides sp. An322 TaxID=1965632 RepID=A0A1Y4AN98_9BACE) HSP 1 Score: 85.5 bits (210), Expect = 1.980e-17 Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = 2
Query: 182 VALGAAAGAVLRHLVSSS----VSQPKRPWAVCGINVLGSFTLG---ALSAHSPLPPQAKLLLGTGLCGGFTTFSTYSLDALNMLQKGRLVSFLLYATLNNAGGVGGAGLGAW 499
V LG G+++R+ V ++ +S PWA +N+LGSF +G LSA L + +L L TGLCGGFTTFST+S + + ++++G +FLLY TL+ A GV A G W
Sbjct: 8 VFLGGGLGSLMRYGVQAAMHGRISPFLFPWATLSVNILGSFLIGMFYVLSARFNLSDETRLFLTTGLCGGFTTFSTFSHEGMTLIRQGNYGTFLLYVTLSVALGVAAAFAGGW 120
BLAST of mRNA_S-ischiensis_contig85.20127.1 vs. uniprot
Match: A0A1Y4D4B5_9BACT (Putative fluoride ion transporter CrcB n=1 Tax=Parabacteroides sp. An277 TaxID=1965619 RepID=A0A1Y4D4B5_9BACT) HSP 1 Score: 84.3 bits (207), Expect = 4.900e-17 Identity = 48/118 (40.68%), Postives = 72/118 (61.02%), Query Frame = 2
Query: 170 DMGAVALGAAAGAVLRHLVSSSVSQPKRP----WAVCGINVLGSFTLG---ALSAHSPLPPQAKLLLGTGLCGGFTTFSTYSLDALNMLQKGRLVSFLLYATLNNAGGVGGAGLGAWL 502
+M A+ +G AG++LR+ V +++ + RP WA +N++GSF +G A SA + +LL TGLCGGFTTFST+S D L M+++G V FLLYA ++ G+ L W+
Sbjct: 4 EMIAIFIGGGAGSLLRYAVQAALHERIRPYDFPWATLSVNIVGSFLIGLFYAWSARWHWSAEVRLLFTTGLCGGFTTFSTFSHDCLQMIRQGSYVPFLLYAFISLMFGI----LAVWI 117 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig85.20127.1 >prot_S-ischiensis_contig85.20127.1 ID=prot_S-ischiensis_contig85.20127.1|Name=mRNA_S-ischiensis_contig85.20127.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=173bp MRAAHSLVALLCAFPLSARGRAISRQRLVFQSPNSGRWPAVAAAVLPAKAback to top mRNA from alignment at S-ischiensis_contig85:216080..218825- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig85.20127.1 ID=mRNA_S-ischiensis_contig85.20127.1|Name=mRNA_S-ischiensis_contig85.20127.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2746bp|location=Sequence derived from alignment at S-ischiensis_contig85:216080..218825- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig85:216080..218825- >mRNA_S-ischiensis_contig85.20127.1 ID=mRNA_S-ischiensis_contig85.20127.1|Name=mRNA_S-ischiensis_contig85.20127.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1038bp|location=Sequence derived from alignment at S-ischiensis_contig85:216080..218825- (Schizocladia ischiensis KU_0333)back to top |