mRNA_S-ischiensis_contig85.20126.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20126.1
Unique NamemRNA_S-ischiensis_contig85.20126.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:212192..214439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2248
Cds size1140
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20126.1prot_S-ischiensis_contig85.20126.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 212545..213684 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817340.3111258-UTR-S-ischiensis_contig85:212191..2125441622817340.3111258-UTR-S-ischiensis_contig85:212191..212544Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 212192..212544 +
1695741040.1815073-UTR-S-ischiensis_contig85:212191..2125441695741040.1815073-UTR-S-ischiensis_contig85:212191..212544Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 212192..212544 +
1622817340.3405488-UTR-S-ischiensis_contig85:213684..2144391622817340.3405488-UTR-S-ischiensis_contig85:213684..214439Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 213685..214439 +
1695741040.199521-UTR-S-ischiensis_contig85:213684..2144391695741040.199521-UTR-S-ischiensis_contig85:213684..214439Schizocladia ischiensis KU_0333UTRS-ischiensis_contig85 213685..214439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817340.3273373-CDS-S-ischiensis_contig85:212544..2136841622817340.3273373-CDS-S-ischiensis_contig85:212544..213684Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 212545..213684 +
1695741040.1904583-CDS-S-ischiensis_contig85:212544..2136841695741040.1904583-CDS-S-ischiensis_contig85:212544..213684Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 212545..213684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20126.1

>prot_S-ischiensis_contig85.20126.1 ID=prot_S-ischiensis_contig85.20126.1|Name=mRNA_S-ischiensis_contig85.20126.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=380bp
MDVYTKTEASERSTFPVETKKKYMEAAAPAAAAVLGSPTGGGEAHGAGDA
TEVDGFLASLTDLADLSKAGEGWPGELEDVDLGQDFGLFVFATEADADPP
PAPASEPTGRSSERPATATWSAGSAAAVSADKALPQAPAAARPHWQEEEG
GQAGTGNCAAAIAAPPDEQHRGGMGPKTVTWDLPAPAASEEPEPPQYNDS
DAAVVEQLFRGLEHLGPVAVEGDRPAPSIMGAAELALAGEEVDERRACFG
PIREKKRRRRITPAQEEPGPGAAAAAHRSASRREVAKSRPRQGGRFVATP
SPFRKASHFERQPTATATAGGGGGGGAAAAATPASVAAAAAAAAAAAAAE
QAQSRQVPGCRDPRPPAPGRAAAAMAQAV*
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mRNA from alignment at S-ischiensis_contig85:212192..214439+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20126.1 ID=mRNA_S-ischiensis_contig85.20126.1|Name=mRNA_S-ischiensis_contig85.20126.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2248bp|location=Sequence derived from alignment at S-ischiensis_contig85:212192..214439+ (Schizocladia ischiensis KU_0333)
GTACACAGAGCCTCGAGCCCCTTGCCCGCGTCGGCCCAAGCCGGGATCGT
TGCGGAAGGTTACCTGCGTCGGGCACGAGCGGCAGCCCGAGGACGGGGCA
CGAGCGGCTACCCGAGGAAGGGCCGGTTCTGTGCAATAATGTCGACCTGA
TCGTCCCACCCCGTCGGACGCGCTTCGCCTCTCGAGCGACCCATGTGCCT
GGTTGCCATGACTTCGACAACCACCTGGCCAACGACGACACCCCGGCACC
GCTCGAGCGGGCCCCCATCATCGATAACACCGACGACATAGCAAACACGG
AGGGCTGGACATCATCTGAACACTCGCGACCCCTGACCCGACCCTGCGCG
GCGATGGACGTGTACACCAAGACGGAGGCCTCAGAACGGAGCACCTTTCC
GGTCGAGACCAAGAAAAAGTACATGGAGGCTGCGGCCCCGGCCGCGGCCG
CGGTCCTGGGCTCCCCGACCGGGGGCGGCGAGGCACACGGAGCTGGCGAC
GCCACAGAGGTGGACGGGTTCCTGGCTAGCCTCACTGATCTGGCCGACCT
TTCCAAGGCTGGCGAGGGCTGGCCTGGAGAGTTGGAGGACGTGGACCTGG
GCCAAGACTTTGGCTTGTTCGTGTTCGCCACCGAGGCAGACGCGGACCCG
CCCCCGGCCCCCGCCAGCGAGCCCACAGGCAGGAGCAGCGAGCGACCCGC
CACCGCCACATGGAGCGCAGGGTCAGCGGCAGCTGTATCGGCGGATAAGG
CCCTGCCGCAGGCACCGGCGGCCGCCCGCCCACACTGGCAGGAGGAGGAG
GGGGGCCAGGCCGGCACGGGCAACTGTGCCGCCGCCATTGCTGCCCCCCC
GGATGAGCAGCACCGGGGGGGAATGGGCCCCAAGACCGTGACGTGGGACT
TGCCGGCGCCTGCTGCCTCCGAGGAGCCAGAGCCCCCCCAGTACAACGAC
TCGGACGCGGCGGTGGTGGAGCAGTTGTTCCGAGGGCTGGAGCACCTGGG
GCCCGTGGCCGTCGAGGGCGACCGCCCCGCACCGAGCATCATGGGAGCTG
CGGAGCTAGCGCTGGCTGGGGAGGAAGTGGACGAGCGGCGGGCCTGCTTT
GGCCCCATCCGGGAGAAGAAGCGGCGGAGGCGGATCACGCCTGCCCAGGA
GGAGCCCGGGCCCGGGGCGGCAGCGGCAGCCCACAGGAGCGCCAGCCGCA
GGGAGGTGGCCAAGAGCCGCCCGCGCCAGGGCGGCCGGTTTGTGGCCACG
CCGTCCCCCTTCCGGAAAGCGTCGCACTTTGAGCGCCAGCCTACTGCTAC
TGCTACTGCTGGCGGTGGTGGTGGTGGTGGTGCTGCTGCTGCTGCCACGC
CTGCGTCCGTGGCAGCGGCGGCCGCGGCGGCGGCGGCGGCGGCGGCGGCG
GAGCAAGCGCAGAGCAGGCAAGTGCCGGGTTGCCGCGACCCCCGCCCCCC
CGCGCCAGGGCGTGCGGCGGCGGCAATGGCACAAGCTGTTTAGTGTACGA
GCAGCTGACATACAGTAGGCCAGACCCCACGGGAGAACCCAGGGGGCGCC
ACAGGTACTTACTGTAGGCACAGCAGGGGCGGGAGACTCATGTACTTCAA
AGTACTTGGCGAGTATATACTCATGTACCGGTAACCCAGGCTGCAGTAGG
GCAGAGAGAGCTTGCCTTACGCTGCCAGCATTTTGTGTTTTATGTGACTG
GTCAAAGCGCGAGCCGTCTTGCCATCCCGGCACACGGAACACAGCAGCCT
GCAGTACAAGTACGGAGCAAAAGCATACTTTCGTACAATACAAAGGCTGT
AGGTACAGCGCAGCAGGTAGTCCTTTGAGCGGTGGAGGCCTACCGTAACC
TGCAGTTTGATTGTAGCGAAGTGGGTGTCGCAGAGCTTCCAAGCTCGACG
ACAGTGCAGCTTACAGCGCTGGCTACGTGCCGTATCGAAAGGACACGTAC
ATAGCCTTTCCCGCAGCAGGCGGGGAGTTTTAACTTGGATGTTTGCTGAC
AAGGAGGGGGTAGAGAATGAAGGCACCCCTTTGGCGAAGATTGGGGGGGG
AGAGCCCTAGAGCACATCGATTGAACAGAATCGTACTACAGTGTGTAGAG
TACGAAGTACTATACTTGAATGCGATAGCCACTATTACGAGAACACTCAA
TCTCACACACGTGCGATTGTACCTCGTTACAATTTATATATATATATATA
TGAATCACAGCATGTACTATACATCTAACGGTGTTCTTCCTATACTGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:212192..214439+

>mRNA_S-ischiensis_contig85.20126.1 ID=mRNA_S-ischiensis_contig85.20126.1|Name=mRNA_S-ischiensis_contig85.20126.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2280bp|location=Sequence derived from alignment at S-ischiensis_contig85:212192..214439+ (Schizocladia ischiensis KU_0333)
ATGGACGTGTACACCAAGACGGAGGCCTCAGAACGGAGCACCTTTCCGGT
CGAGACCAAGAAAAAGTACATGGAGGCTGCGGCCCCGGCCGCGGCCGCGG
TCCTGGGCTCCCCGACCGGGGGCGGCGAGGCACACGGAGCTGGCGACGCC
ACAGAGGTGGACGGGTTCCTGGCTAGCCTCACTGATCTGGCCGACCTTTC
CAAGGCTGGCGAGGGCTGGCCTGGAGAGTTGGAGGACGTGGACCTGGGCC
AAGACTTTGGCTTGTTCGTGTTCGCCACCGAGGCAGACGCGGACCCGCCC
CCGGCCCCCGCCAGCGAGCCCACAGGCAGGAGCAGCGAGCGACCCGCCAC
CGCCACATGGAGCGCAGGGTCAGCGGCAGCTGTATCGGCGGATAAGGCCC
TGCCGCAGGCACCGGCGGCCGCCCGCCCACACTGGCAGGAGGAGGAGGGG
GGCCAGGCCGGCACGGGCAACTGTGCCGCCGCCATTGCTGCCCCCCCGGA
TGAGCAGCACCGGGGGGGAATGGGCCCCAAGACCGTGACGTGGGACTTGC
CGGCGCCTGCTGCCTCCGAGGAGCCAGAGCCCCCCCAGTACAACGACTCG
GACGCGGCGGTGGTGGAGCAGTTGTTCCGAGGGCTGGAGCACCTGGGGCC
CGTGGCCGTCGAGGGCGACCGCCCCGCACCGAGCATCATGGGAGCTGCGG
AGCTAGCGCTGGCTGGGGAGGAAGTGGACGAGCGGCGGGCCTGCTTTGGC
CCCATCCGGGAGAAGAAGCGGCGGAGGCGGATCACGCCTGCCCAGGAGGA
GCCCGGGCCCGGGGCGGCAGCGGCAGCCCACAGGAGCGCCAGCCGCAGGG
AGGTGGCCAAGAGCCGCCCGCGCCAGGGCGGCCGGTTTGTGGCCACGCCG
TCCCCCTTCCGGAAAGCGTCGCACTTTGAGCGCCAGCCTACTGCTACTGC
TACTGCTGGCGGTGGTGGTGGTGGTGGTGCTGCTGCTGCTGCCACGCCTG
CGTCCGTGGCAGCGGCGGCCGCGGCGGCGGCGGCGGCGGCGGCGGCGGAG
CAAGCGCAGAGCAGGCAAGTGCCGGGTTGCCGCGACCCCCGCCCCCCCGC
GCCAGGGCGTGCGGCGGCGGCAATGGCACAAGCTGTTTAGATGGACGTGT
ACACCAAGACGGAGGCCTCAGAACGGAGCACCTTTCCGGTCGAGACCAAG
AAAAAGTACATGGAGGCTGCGGCCCCGGCCGCGGCCGCGGTCCTGGGCTC
CCCGACCGGGGGCGGCGAGGCACACGGAGCTGGCGACGCCACAGAGGTGG
ACGGGTTCCTGGCTAGCCTCACTGATCTGGCCGACCTTTCCAAGGCTGGC
GAGGGCTGGCCTGGAGAGTTGGAGGACGTGGACCTGGGCCAAGACTTTGG
CTTGTTCGTGTTCGCCACCGAGGCAGACGCGGACCCGCCCCCGGCCCCCG
CCAGCGAGCCCACAGGCAGGAGCAGCGAGCGACCCGCCACCGCCACATGG
AGCGCAGGGTCAGCGGCAGCTGTATCGGCGGATAAGGCCCTGCCGCAGGC
ACCGGCGGCCGCCCGCCCACACTGGCAGGAGGAGGAGGGGGGCCAGGCCG
GCACGGGCAACTGTGCCGCCGCCATTGCTGCCCCCCCGGATGAGCAGCAC
CGGGGGGGAATGGGCCCCAAGACCGTGACGTGGGACTTGCCGGCGCCTGC
TGCCTCCGAGGAGCCAGAGCCCCCCCAGTACAACGACTCGGACGCGGCGG
TGGTGGAGCAGTTGTTCCGAGGGCTGGAGCACCTGGGGCCCGTGGCCGTC
GAGGGCGACCGCCCCGCACCGAGCATCATGGGAGCTGCGGAGCTAGCGCT
GGCTGGGGAGGAAGTGGACGAGCGGCGGGCCTGCTTTGGCCCCATCCGGG
AGAAGAAGCGGCGGAGGCGGATCACGCCTGCCCAGGAGGAGCCCGGGCCC
GGGGCGGCAGCGGCAGCCCACAGGAGCGCCAGCCGCAGGGAGGTGGCCAA
GAGCCGCCCGCGCCAGGGCGGCCGGTTTGTGGCCACGCCGTCCCCCTTCC
GGAAAGCGTCGCACTTTGAGCGCCAGCCTACTGCTACTGCTACTGCTGGC
GGTGGTGGTGGTGGTGGTGCTGCTGCTGCTGCCACGCCTGCGTCCGTGGC
AGCGGCGGCCGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGCAAGCGCAGA
GCAGGCAAGTGCCGGGTTGCCGCGACCCCCGCCCCCCCGCGCCAGGGCGT
GCGGCGGCGGCAATGGCACAAGCTGTTTAG
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