mRNA_S-ischiensis_contig85.20123.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20123.1
Unique NamemRNA_S-ischiensis_contig85.20123.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:177352..178097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817339.432602-CDS-S-ischiensis_contig85:177351..1776271622817339.432602-CDS-S-ischiensis_contig85:177351..177627Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 177352..177627 +
1695741039.6324146-CDS-S-ischiensis_contig85:177351..1776271695741039.6324146-CDS-S-ischiensis_contig85:177351..177627Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 177352..177627 +
1622817339.4432516-CDS-S-ischiensis_contig85:177908..1780971622817339.4432516-CDS-S-ischiensis_contig85:177908..178097Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 177909..178097 +
1695741039.6436043-CDS-S-ischiensis_contig85:177908..1780971695741039.6436043-CDS-S-ischiensis_contig85:177908..178097Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 177909..178097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20123.1prot_S-ischiensis_contig85.20123.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 177352..178097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20123.1

>prot_S-ischiensis_contig85.20123.1 ID=prot_S-ischiensis_contig85.20123.1|Name=mRNA_S-ischiensis_contig85.20123.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=155bp
GRHVGLSLSDVRLDEAAWPLCRTARRCRGCEHEGASSPHARRVPERGVPP
RSNALDLASMADRGQLRSQIAAIHKDDGLSQEEKSRALFELMNPSRSGAD
NEEENSNANGPAERDAGDGEVLPHGPYEGKLSCNHYVRRVWVHPPGRAAA
PGAYE
back to top

mRNA from alignment at S-ischiensis_contig85:177352..178097+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20123.1 ID=mRNA_S-ischiensis_contig85.20123.1|Name=mRNA_S-ischiensis_contig85.20123.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=746bp|location=Sequence derived from alignment at S-ischiensis_contig85:177352..178097+ (Schizocladia ischiensis KU_0333)
GGGCGGCATGTGGGACTGTCGCTGTCGGACGTGAGGCTCGACGAAGCTGC
GTGGCCCCTTTGCCGTACCGCCCGAAGGTGCCGAGGTTGCGAGCACGAGG
GAGCCTCCAGTCCCCACGCCCGGCGTGTTCCGGAGAGGGGAGTGCCACCG
AGGTCGAACGCCCTCGACCTCGCCAGCATGGCGGACAGGGGGCAACTACG
CTCGCAGATCGCAGCAATACATAAGGATGACGGCCTCAGCCAGGAGGAGA
AGAGCCGGGCGTTGTTCGAGCTTATGGTGGGTGGTATTCTGGCCTATTTC
AACCAAGTCGACACTGCGCGACCGCAAAAGCGGCTCTTATTTTCGTGGTT
CCATCGCGAATTGGTCCAGGCCTTGGGCTTGGTTCCGCCGTCCCTGGCTC
AACCGGTACACGTTGAGTTTTGATTCATTCACAGGGCCGGCCTTGGCAGA
CAACCAACAGCCCTTTTCCCGCCTGGCACGCACACATCAGCGGCGCGGCG
GGTGATCGGCCACTACTAAACATTCAACAATCCGCTAACAACTCCACGCG
ACAACAGAACCCCAGCCGATCCGGCGCGGATAACGAGGAGGAGAACTCCA
ATGCCAATGGGCCGGCGGAGAGGGACGCCGGGGATGGCGAGGTGCTGCCC
CACGGCCCTTACGAGGGCAAGCTCAGTTGCAACCACTACGTGCGGCGCGT
GTGGGTGCACCCGCCGGGGCGGGCGGCGGCGCCGGGGGCCTACGAG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig85:177352..178097+

>mRNA_S-ischiensis_contig85.20123.1 ID=mRNA_S-ischiensis_contig85.20123.1|Name=mRNA_S-ischiensis_contig85.20123.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=930bp|location=Sequence derived from alignment at S-ischiensis_contig85:177352..178097+ (Schizocladia ischiensis KU_0333)
GGGCGGCATGTGGGACTGTCGCTGTCGGACGTGAGGCTCGACGAAGCTGC
GTGGCCCCTTTGCCGTACCGCCCGAAGGTGCCGAGGTTGCGAGCACGAGG
GAGCCTCCAGTCCCCACGCCCGGCGTGTTCCGGAGAGGGGAGTGCCACCG
AGGTCGAACGCCCTCGACCTCGCCAGCATGGCGGACAGGGGGCAACTACG
CTCGCAGATCGCAGCAATACATAAGGATGACGGCCTCAGCCAGGAGGAGA
AGAGCCGGGCGTTGTTCGAGCTTATGGGGCGGCATGTGGGACTGTCGCTG
TCGGACGTGAGGCTCGACGAAGCTGCGTGGCCCCTTTGCCGTACCGCCCG
AAGGTGCCGAGGTTGCGAGCACGAGGGAGCCTCCAGTCCCCACGCCCGGC
GTGTTCCGGAGAGGGGAGTGCCACCGAGGTCGAACGCCCTCGACCTCGCC
AGCATGGCGGACAGGGGGCAACTACGCTCGCAGATCGCAGCAATACATAA
GGATGACGGCCTCAGCCAGGAGGAGAAGAGCCGGGCGTTGTTCGAGCTTA
TGAACCCCAGCCGATCCGGCGCGGATAACGAGGAGGAGAACTCCAATGCC
AATGGGCCGGCGGAGAGGGACGCCGGGGATGGCGAGGTGCTGCCCCACGG
CCCTTACGAGGGCAAGCTCAGTTGCAACCACTACGTGCGGCGCGTGTGGG
TGCACCCGCCGGGGCGGGCGGCGGCGCCGGGGGCCTACGAGAACCCCAGC
CGATCCGGCGCGGATAACGAGGAGGAGAACTCCAATGCCAATGGGCCGGC
GGAGAGGGACGCCGGGGATGGCGAGGTGCTGCCCCACGGCCCTTACGAGG
GCAAGCTCAGTTGCAACCACTACGTGCGGCGCGTGTGGGTGCACCCGCCG
GGGCGGGCGGCGGCGCCGGGGGCCTACGAG
back to top