mRNA_S-ischiensis_contig85.20120.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20120.1
Unique NamemRNA_S-ischiensis_contig85.20120.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig85.20120.1 vs. uniprot
Match: A0A7S4DL22_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DL22_HETAK)

HSP 1 Score: 99.0 bits (245), Expect = 9.520e-24
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:  121 MAVDAGGRLNTAKLERELVDALHEDERRTKTDAMKKRAIHTAGSYDEFRHMVSCAQLTPVSRKELEALSDPKRGWQ 348
            MA++  G LNT KL++EL+  L +D    +TD MKKRAIH AG+YDEFR+MV CA   PV+RKELE+LS P +GWQ
Sbjct:    4 MAINPDGSLNTKKLQKELIQGLEDDRNYQRTDDMKKRAIHVAGTYDEFRNMVLCANQQPVTRKELESLSKPSKGWQ 79
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BLAST of mRNA_S-ischiensis_contig85.20120.1 vs. uniprot
Match: A0A1V9Z8T6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z8T6_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.460e-16
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:  121 MAVDAGGRLNTAKLERELVDALHEDERRTKTDAMKKRAIHTAGSYDEFRHMVSCAQLTPVSRKELEALSDPKR 339
            MA    G  +T  L++ELV+AL ED +   TD MKKRAIHTAGSYDEFR+ V CA L PV+ KEL+ LS  +R
Sbjct:    1 MASIYEGTFDTEALQKELVNALEEDRKYKATDEMKKRAIHTAGSYDEFRNFVLCADLNPVTSKELQNLSKSQR 73
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BLAST of mRNA_S-ischiensis_contig85.20120.1 vs. uniprot
Match: A0A485L547_9STRA (Aste57867_16283 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L547_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.540e-16
Identity = 42/68 (61.76%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:  136 GGRLNTAKLERELVDALHEDERRTKTDAMKKRAIHTAGSYDEFRHMVSCAQLTPVSRKELEALSDPKR 339
            GG  +TA L++EL  AL ED +   TD MKKRAIHTAGSYDEFR+ V CA L PVS KEL+ LS   R
Sbjct:    7 GGAFDTAALQQELAQALEEDRKYKLTDEMKKRAIHTAGSYDEFRNFVLCADLKPVSSKELQNLSRSAR 74
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BLAST of mRNA_S-ischiensis_contig85.20120.1 vs. uniprot
Match: A0A1V9Z2T7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z2T7_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.790e-16
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:  121 MAVDAGGRLNTAKLERELVDALHEDERRTKTDAMKKRAIHTAGSYDEFRHMVSCAQLTPVSRKELEALSDPKR 339
            MA    G  +TA L++ELV AL ED +   TD MKKRAIHTA SYDEF++ V CA L PVS KEL+ LS  +R
Sbjct:    1 MASIYSGAFDTASLQKELVQALEEDRKYKATDEMKKRAIHTASSYDEFKNFVLCADLKPVSSKELQNLSKSER 73
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BLAST of mRNA_S-ischiensis_contig85.20120.1 vs. uniprot
Match: A0A6A5AI51_9STRA (Dynein_attach_N domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AI51_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.770e-16
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:  121 MAVDAGGRLNTAKLERELVDALHEDERRTKTDAMKKRAIHTAGSYDEFRHMVSCAQLTPVSRKELEALSDPKR 339
            MA    G  +TA L++ELV AL ED +   TD MKKRAIHTA SYD+FR+ V CA L PVS KEL+ LS  +R
Sbjct:    1 MASIYEGAFDTAALQKELVIALEEDRKYKLTDDMKKRAIHTAASYDDFRNFVLCADLKPVSSKELQNLSKSER 73
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BLAST of mRNA_S-ischiensis_contig85.20120.1 vs. uniprot
Match: A0A6G0X454_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X454_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.430e-15
Identity = 42/73 (57.53%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:  121 MAVDAGGRLNTAKLERELVDALHEDERRTKTDAMKKRAIHTAGSYDEFRHMVSCAQLTPVSRKELEALSDPKR 339
            MA    G  +TA L++EL  AL ED +  KTD MKKRAIHTA SYDEFR+ V CA L PVS K+L+ LS   R
Sbjct:    1 MASIYEGTFDTAALQKELAIALEEDRKYKKTDEMKKRAIHTAASYDEFRNFVLCADLKPVSSKDLQNLSKSDR 73
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BLAST of mRNA_S-ischiensis_contig85.20120.1 vs. uniprot
Match: T0S406_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S406_SAPDV)

HSP 1 Score: 79.0 bits (193), Expect = 1.690e-15
Identity = 41/73 (56.16%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:  121 MAVDAGGRLNTAKLERELVDALHEDERRTKTDAMKKRAIHTAGSYDEFRHMVSCAQLTPVSRKELEALSDPKR 339
            MA    G  +TA L++EL  AL ED +   TD MKKRAIHTA SYDEF++ V CA L PVS KEL+ LS  +R
Sbjct:    1 MASIYEGTFDTASLQKELAQALDEDRKYKATDEMKKRAIHTAASYDEFKNFVLCADLKPVSSKELQNLSKSER 73
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BLAST of mRNA_S-ischiensis_contig85.20120.1 vs. uniprot
Match: W4H561_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H561_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.810e-15
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:  121 MAVDAGGRLNTAKLERELVDALHEDERRTKTDAMKKRAIHTAGSYDEFRHMVSCAQLTPVSRKELEALSDPKR 339
            MA    G  +TA L++ELV AL ED +   TD MKKRAIHTA SYD+FR+ V CA L PVS KEL+ LS  +R
Sbjct:    1 MASIYEGAFDTAALQKELVIALEEDRKYKLTDDMKKRAIHTAASYDDFRNFVLCADLKPVSSKELQNLSKSER 73
[Close]
BLAST of mRNA_S-ischiensis_contig85.20120.1 vs. uniprot
Match: A0A8K1CTG2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTG2_PYTOL)

HSP 1 Score: 78.2 bits (191), Expect = 3.700e-15
Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:  139 GRLNTAKLERELVDALHEDERRTKTDAMKKRAIHTAGSYDEFRHMVSCAQLTPVSRKELEALSDPKR 339
            G  +T+ L+ ELV AL +D +  +TDAMKKRAIHTA +YDEFR++V+CA L PV +KEL++ +  +R
Sbjct:   13 GCFDTSALQEELVKALEDDRKYKRTDAMKKRAIHTAANYDEFRNLVACADLKPVKQKELQSFTKTER 79
[Close]
BLAST of mRNA_S-ischiensis_contig85.20120.1 vs. uniprot
Match: A0A024UPP0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UPP0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.090e-14
Identity = 41/73 (56.16%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:  121 MAVDAGGRLNTAKLERELVDALHEDERRTKTDAMKKRAIHTAGSYDEFRHMVSCAQLTPVSRKELEALSDPKR 339
            MA    G  +TA L++EL  AL ED +   TD MKKRAIHTA SYD+FR+ V CA L PVS KEL+ LS  +R
Sbjct:    1 MASIYEGAFDTAALQKELALALEEDRKYKLTDEMKKRAIHTAASYDDFRNFVLCADLKPVSSKELQNLSKSER 73
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DL22_HETAK9.520e-2459.21Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1V9Z8T6_9STRA1.460e-1657.53Uncharacterized protein (Fragment) n=1 Tax=Thraust... [more]
A0A485L547_9STRA1.540e-1661.76Aste57867_16283 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9Z2T7_9STRA1.790e-1657.53Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6A5AI51_9STRA3.770e-1657.53Dynein_attach_N domain-containing protein (Fragmen... [more]
A0A6G0X454_9STRA1.430e-1557.53Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
T0S406_SAPDV1.690e-1556.16Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
W4H561_9STRA2.810e-1557.53Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A8K1CTG2_PYTOL3.700e-1553.73Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024UPP0_9STRA1.090e-1456.16Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:166941..167591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue8.4e-12
Seed eggNOG ortholog112098.XP_008607100.1
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0015630,GO:0030286,GO:0032838,GO:0032991,GO:0036157,GO:0042802,GO:0042803,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0046983,GO:0097014,GO:0099568,GO:0120025,GO:0120038,GO:1902494
EggNOG free text desc.Dynein attachment factor N-terminus
EggNOG OGs2CFN8@1,2S3J2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817341.3187835-CDS-S-ischiensis_contig85:166940..1672421622817341.3187835-CDS-S-ischiensis_contig85:166940..167242Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 166941..167242 +
1695741040.8570616-CDS-S-ischiensis_contig85:166940..1672421695741040.8570616-CDS-S-ischiensis_contig85:166940..167242Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 166941..167242 +
1622817341.3326283-CDS-S-ischiensis_contig85:167538..1675901622817341.3326283-CDS-S-ischiensis_contig85:167538..167590Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 167539..167590 +
1695741040.8705027-CDS-S-ischiensis_contig85:167538..1675901695741040.8705027-CDS-S-ischiensis_contig85:167538..167590Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 167539..167590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20120.1prot_S-ischiensis_contig85.20120.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 166941..167590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20120.1

>prot_S-ischiensis_contig85.20120.1 ID=prot_S-ischiensis_contig85.20120.1|Name=mRNA_S-ischiensis_contig85.20120.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=118bp
WSQTGSPSRSLSWNSVDSGCGAGSDPLSFGESLGNGRETAMAVDAGGRLN
TAKLERELVDALHEDERRTKTDAMKKRAIHTAGSYDEFRHMVSCAQLTPV
SRKELEALSDPKRGWQGR
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mRNA from alignment at S-ischiensis_contig85:166941..167591+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20120.1 ID=mRNA_S-ischiensis_contig85.20120.1|Name=mRNA_S-ischiensis_contig85.20120.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=651bp|location=Sequence derived from alignment at S-ischiensis_contig85:166941..167591+ (Schizocladia ischiensis KU_0333)
TGGAGTCAAACAGGTTCCCCGTCGCGAAGTCTCTCGTGGAATTCGGTGGA
CTCTGGTTGTGGGGCGGGATCTGACCCGTTGTCGTTTGGGGAATCTTTGG
GCAACGGACGAGAAACCGCGATGGCTGTGGACGCGGGAGGGCGGCTGAAC
ACAGCCAAGCTCGAGCGGGAGCTGGTCGACGCGCTCCACGAGGATGAGCG
CCGGACAAAGACGGACGCGATGAAGAAGCGTGCCATCCACACTGCCGGCA
GCTACGACGAGTTCAGGCACATGGTATCGTGTGCACAACTGACCCCAGTG
AGGTGAGCCCTTCCCCAACCCCTGGCCCCGGTGTAAGGCTCAGCCGCTCT
TGGCGGTCGCTCGTATCTCTTAAGGGTTTCATCCGCTCGAGTCTGCAAGC
GCAAGAGTTCGGTTTCGCCCTCCTCATACCCTACAATACCCCCTCACTAG
CTCACTGTAATATACGAGTAATAGCATTCAACATATTAAATAAATTAACT
ACTAATACGAGAACAGTCAATCGCACACACGTGCGATTTACCTCGTTACA
ATTTATATGAATCACCACCCCCTCCCGCCCGCTGCTGGTCTCCTCCAGCC
GCAAGGAGCTGGAAGCACTTTCCGACCCGAAGAGGGGCTGGCAGGGACGC
T
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:166941..167591+

>mRNA_S-ischiensis_contig85.20120.1 ID=mRNA_S-ischiensis_contig85.20120.1|Name=mRNA_S-ischiensis_contig85.20120.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=708bp|location=Sequence derived from alignment at S-ischiensis_contig85:166941..167591+ (Schizocladia ischiensis KU_0333)
TGGAGTCAAACAGGTTCCCCGTCGCGAAGTCTCTCGTGGAATTCGGTGGA
CTCTGGTTGTGGGGCGGGATCTGACCCGTTGTCGTTTGGGGAATCTTTGG
GCAACGGACGAGAAACCGCGATGGCTGTGGACGCGGGAGGGCGGCTGAAC
ACAGCCAAGCTCGAGCGGGAGCTGGTCGACGCGCTCCACGAGGATGAGCG
CCGGACAAAGACGGACGCGATGAAGAAGCGTGCCATCCACACTGCCGGCA
GCTACGACGAGTTCAGGCACATGGTATCGTGTGCACAACTGACCCCAGTG
AGTGGAGTCAAACAGGTTCCCCGTCGCGAAGTCTCTCGTGGAATTCGGTG
GACTCTGGTTGTGGGGCGGGATCTGACCCGTTGTCGTTTGGGGAATCTTT
GGGCAACGGACGAGAAACCGCGATGGCTGTGGACGCGGGAGGGCGGCTGA
ACACAGCCAAGCTCGAGCGGGAGCTGGTCGACGCGCTCCACGAGGATGAG
CGCCGGACAAAGACGGACGCGATGAAGAAGCGTGCCATCCACACTGCCGG
CAGCTACGACGAGTTCAGGCACATGGTATCGTGTGCACAACTGACCCCAG
TGAGCCGCAAGGAGCTGGAAGCACTTTCCGACCCGAAGAGGGGCTGGCAG
GGACGCCCGCAAGGAGCTGGAAGCACTTTCCGACCCGAAGAGGGGCTGGC
AGGGACGC
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