mRNA_S-ischiensis_contig85.20116.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20116.1
Unique NamemRNA_S-ischiensis_contig85.20116.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig85.20116.1 vs. uniprot
Match: D7G480_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G480_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 8.920e-11
Identity = 53/172 (30.81%), Postives = 78/172 (45.35%), Query Frame = 1 
Query:   70 MVMEFDDRHSVGAPSFMAPEIARGHRERAPLDYSNSDVYSVGMCAYKMLCEQGAEPFRTRQRMDAKREGHGA-LAPQGPSAGAAITSINKGTWNGGNGHECDSNEGLTDCAGLPVRFCPLLAAESVVGYRGCPLVVCQLVQGLLKIDPAQRTSAGAGLSVCTWLVRQLEEAE 582
            MV+ F +    GAP+ +APE+AR   E  PL++  SDV+SVG+C Y+ML            R D+    +G  L  + P                      +  +GLT+    P+   P           GCP  V QL +GLL  DP +R +A  G S+ +  V +LE+A+
Sbjct:   77 MVIPFSNYCVAGAPNTLAPELARAWEEETPLNFKRSDVFSVGLCMYRML------------RPDSVIIDNGTGLEEKDP---------------------LEKTKGLTNQEAWPLPIFP-------ENKGGCPFEVSQLCRGLLLADPYKRLAASEGQSIASNYVSRLEDAD 208
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BLAST of mRNA_S-ischiensis_contig85.20116.1 vs. uniprot
Match: A0A6H5JIG6_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG6_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 9.030e-11
Identity = 53/172 (30.81%), Postives = 79/172 (45.93%), Query Frame = 1 
Query:   70 MVMEFDDRHSVGAPSFMAPEIARGHRERAPLDYSNSDVYSVGMCAYKMLCEQGAEPFRTRQRMDAKREGHGA-LAPQGPSAGAAITSINKGTWNGGNGHECDSNEGLTDCAGLPVRFCPLLAAESVVGYRGCPLVVCQLVQGLLKIDPAQRTSAGAGLSVCTWLVRQLEEAE 582
            MV+ F +    GAP+ +APE+AR   E  PL+++ SDV+SVG+C Y+ML            R D+    +G  L  + P                      +  +GLT+    P+   P           GCP  V QL +GLL  DP +R +A  G S+ +  V +LE+A+
Sbjct:  524 MVIPFSNYCVAGAPNILAPELARAWEEETPLNFTRSDVFSVGLCMYRML------------RPDSVIIDNGTGLEVKDP---------------------LEKTKGLTNQEAWPLPIFP-------ENKGGCPFEVSQLCRGLLLADPCKRLAAFEGQSIASNYVSRLEDAD 655
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G480_ECTSI8.920e-1130.81Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5JIG6_9PHAE9.030e-1130.81Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:120178..125001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size828
Cds size825
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20116.1prot_S-ischiensis_contig85.20116.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 120180..125001 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817340.8756416-CDS-S-ischiensis_contig85:120179..1205601622817340.8756416-CDS-S-ischiensis_contig85:120179..120560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 120180..120560 -
1695741040.5368636-CDS-S-ischiensis_contig85:120179..1205601695741040.5368636-CDS-S-ischiensis_contig85:120179..120560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 120180..120560 -
1622817340.8870144-CDS-S-ischiensis_contig85:120922..1210861622817340.8870144-CDS-S-ischiensis_contig85:120922..121086Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 120923..121086 -
1695741040.5474563-CDS-S-ischiensis_contig85:120922..1210861695741040.5474563-CDS-S-ischiensis_contig85:120922..121086Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 120923..121086 -
1622817340.9007344-CDS-S-ischiensis_contig85:121989..1220891622817340.9007344-CDS-S-ischiensis_contig85:121989..122089Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 121990..122089 -
1695741040.5582535-CDS-S-ischiensis_contig85:121989..1220891695741040.5582535-CDS-S-ischiensis_contig85:121989..122089Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 121990..122089 -
1622817340.914895-CDS-S-ischiensis_contig85:124821..1250011622817340.914895-CDS-S-ischiensis_contig85:124821..125001Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 124822..125001 -
1695741040.568061-CDS-S-ischiensis_contig85:124821..1250011695741040.568061-CDS-S-ischiensis_contig85:124821..125001Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 124822..125001 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20116.1

>prot_S-ischiensis_contig85.20116.1 ID=prot_S-ischiensis_contig85.20116.1|Name=mRNA_S-ischiensis_contig85.20116.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=275bp
GGAEAGLGAVPGRRGGAIVGVEGMVMEFDDRHSVGAPSFMAPEIARGHRE
RAPLDYSNSDVYSVGMCAYKMLCEQGAEPFRTRQRMDAKREGHGALAPQG
PSAGAAITSINKGTWNGGNGHECDSNEGLTDCAGLPVRFCPLLAAESVVG
YRGCPLVVCQLVQGLLKIDPAQRTSAGAGLSVCTWLVRQLEEAEAAAAAA
AAPAAADGSGGGGGGHGRRCGGDGTGGGGGGGGAAAPAGGAVAAAAYTTA
VAPRGRGPAHPLKELPALSSSTTAT
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mRNA from alignment at S-ischiensis_contig85:120178..125001-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20116.1 ID=mRNA_S-ischiensis_contig85.20116.1|Name=mRNA_S-ischiensis_contig85.20116.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4824bp|location=Sequence derived from alignment at S-ischiensis_contig85:120178..125001- (Schizocladia ischiensis KU_0333)
GGCGGTGCTGAGGCTGGCTTGGGGGCTGTGCCGGGGCGACGTGGCGGGGC
TATAGTAGGTGTGGAGGGCATGGTGATGGAGTTTGACGACAGGCATTCCG
TGGGCGCGCCGTCTTTTATGGCTCCGGAGATTGCCAGGGGGCACCGGGAG
AGGGCCCCCCTGGACTACTCCAACAGTGACGTGAGTGCATACACTAGTCT
ACTACTGTACTCGTACAATACTACTGTACTCTACTGAGTAATATACTGTA
CAATACTTTAGCGCCGTCCTTCATGGCCCCAGTTATTGCCAGGGGTCACC
GGGAGAGGGCCCCCCTGGACTACTCCAACAGTGATGTGAGTACATACAGC
AATCTACTATCTACTACTGTACAGTGCTACTGTACTCTACTACTGTACAA
CACTACTTCGCGCCGTCTTTCATGGCCCCGGAGATTGCCAGGGGGCACCG
GGAGAGGGCCCCCCTGGACTACAACAGTGATGTGAGCAGTGTACATGCAG
TACTGTACTCTACTACTGTACAATATTATTGTACTCTGCTACTGTACAAT
ACTTATACAATATGCCGCGAGAGGGGCCCCCTGGACTACTCCAACAGTAA
CGTGAGCAGTGTACATACAGTACTGTACTCTACTACTGTACAGTACTATT
GTACTCTGGTACTGTACAATACTCATACAATGCACCGCGAGAGGCCCCCC
CTTACTACTCCAACAGTGACGTGAGCAATGTACTAGTATATACATACGTA
CTCACGTTGTGCTTGCCGCAGTCCCGAGACCATTGACCATACATACAGTG
CTCTACTACTCGCGCTGTACAATACTGCTGTACGAGTACTCTACTACTGT
ACAATACTAATGTACTCTACTACTGTACAATAGTACTGTACTGAGGTGTT
CTGCGCGAGGGGGGGGGGCAAATCACCCGGTTCCTTACATGCCACCGCTT
CGGCTTTCCAGCTCTAACTCGAGAAGAATTGCGAATTGGTGCGTGAAAAT
TTGTGCATCGTCTGTTCTTGCCGTTGTGCACACTGTGGCAAAGTTTCATG
CTGCGGTTCGAAGTGGTTCCCGAGGGGCGGGTGAGCGGCGTCCGCCGCTC
ATGCAATGTTCCCACCCCCGGCCTCGCGTAGAACGCCTCACACCACTACT
GTACAATACTGCTGTACCGTACAATACTACTGTACTCTACTGCTGTACAA
CACTGCTGTACTCTACTACTGTACTCCGTTACTGTACAATACTACAGTAC
TGTACTCTACTACTGTACTCTACTACTGTACATTGCTACTGTGCTCTACT
ACTGTACAGTAGAGTACTCTACTGGAAACGTCTTCTGCGATTGCATGTCT
GGACTACGTACTAGTAGTAGTGTACTCCAGCAGTGAACAGTGGTGAAAAG
TGTAGTGCTGCACCGCAGCTTGCACTGTATCTGGTACTTGTGTTGCAGTG
CTAGTAGGTCTCCTTGGAATGTACGAAGTACTGGACTTGCTCCAACAGTG
ACGTGAGCGCTGTACATACAGTACTCTACTACAATCCTACAGTCTAGTGG
ACATTTCTTCTGCAATTGCGTGTCTGGACTGCGTACTTGTGGTACTATCC
TACCACTACTACAATTACAGAAGGGACCAGTCAATAAGTTGGAAAATTTT
CGGGGGAAATCAACACACAACCAACCGTCAAGGAGTTCTACTGTCAATTA
CCTTTTCTGGGTCTCTTTCATGTCAACACGGGTAATGCAAATATTGTGAA
TTTTTAGGTACAGTCCGAGTCAACATGGTAATGCAATTACTGTGAATTTT
TAGGCATAGTCCGACCAATAGCTCGGAGCAGTTCATGGGTGTTCAATGTC
CGAGCTTTTCCCCTCCGGTTCCTTCTGTATTGCAACAAGTACTGTAGTAA
AAGTAGTCGACTCTCAACAGTGATCAGAGGTGAAGGCTGGGTTGCTGCGC
CGTATCTTGTGTTACTGTACTGTACTCGTACTACTGTACTGTACTGTACT
GTGGGATCTCTTTGAACAGTTATTTCACTTGTGGGAGGGCAAACCCGAAG
TCTACGGTACGGTTCAAACCTAAGCCCGCAACGGGCCGGGTGGCCCCACC
GAACAGGCGTTGCTGGTTCACGGGTGCCTTGCATTGGGCCACACATCGGG
CCGGTCCCCCCGGCTGGCAGCAGTATTCGCAGAAGATCGTATCTTTGCCT
GGTCTGGTCCCAGGTGCCAGGGTGTATCTTGTGTTATTGGTCAATATTGC
CTCCGGCCGGATGCTGTCCCGCCGAGGTCGTATCAGAAGGTTCCGCCGAC
CGTCAACGCTCGGCGGCCCCTCCCCGAGGGGTTTGGAACGGTAGCGTAGC
CTCGGGCCATCGACCAAGCACAATTGGTTAACTCTTATGTCGCAAGACAA
GCCAACGAGTACATGTACTGCAAGTGGCTGTTCGTTTCTAATGTACCCTA
CTGTCGGAGGGCAAACCCCAACCTAGAGCTGTCGGCTAGGCGCGCATTGC
AAGGTTGTGTCGCAAGACAACGACGGTAGAGTAGGCCAATGATTACTTCC
AAGTACACTGCGAAGTAGTGGCGACGGTTCATTGCTACTGTACTGCATGG
TCAACGGTCTCGGGACTACGGCAAGCGCAGCGTGAGTACATGTATATACT
GCATACGCTTGCTGTGTTTACATATGTAGTTTCTGTTCATTGCTACTGTA
CATGCTCCGTCCAACAGGTTCCGAACGTGAGTACACACACTGCATACGCT
TGCTGTGTTTGCCTTGCCTCAGGTGTACTCTGTTGGCATGTGCGTGTACA
AAATGCTATGCGAGCAAGGGGCGGAGTCCTTGTTCGAATACTAGTAGTAG
TGAGTGACAGTTCATTGCTACTGTACTGCATACTTACGCTTTCTGTGTTT
ACCTCGCCGCAGGTGTACTCTGTGGGCATGTGCGCATACAAAATGCTGTG
CGAGCAAGGGGCGGAGCCCTTCAGGACCCGCCAGCGCATGGACGCTAAGA
GAGAGGGGCACGGTGAGTGTCACGGGGAGGGGGGCGCGGTGAGTGTCATG
GGAAGAGAGGGGCGCGGTGAGTGTCATTTTGAGAGAGGGGTACGGTGAGT
GTCATGGGGAGAGGGGGCACGGCGAGTGTCGCGGTGAGTGTGGCATACAA
GCTCATGGCCAGGAGGTATCGCTCCCTGCTTGGAAGTCAAAGTCATACTA
CTTACTCGTAAAGCATATACTCGTACAGTACATATGTCAGAAGTACACCG
ACACACTTGGAAGTGTTCGAGTAGCGGGGGGAGAGGGGCAAGGGGGCAGA
GGCAGGGGCGGGGGCGCTGCGGCTGAGCACAGACCCCATGCCCTCCACGC
CCAGGGTGAGGGAGGACACAAGCTAAGGCATGTACTTGGAAATATGCACT
GATTGACTGTCAGTCTCTTACCTGCTTGGGTATACTTGGGTTCTCGAAAC
TCAAATCTCCCCAACTGAAGCACTATTGCACTGCAGTACCAGCATATATG
CACTCATCGGCGTGTCTTGCGACATGGCCTTGCAAGGCGTGCGTTGCCAA
CAGCTCTAGGTCGGTAGCTTCGGGTTCGCCCTTTGGAAGGAGTAGCTATT
TGGCCACGGACTGGAAGTACTATGCATATACGCCTATACAGTCGAACTAT
TTCAGTCAAACCTTTGGTTCGCCCTCGAGCAGGAGTAGCTATTTGGCCAC
GGCTGTCGTGTCCCGACTAAGGCCGGGACGGAGCATGCCGGGCATGTCCT
TCAACCTCGGTGCGTCTGTTTACTTCGAAGGAAGTGCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCATGCCTTCATTCTGCGGT
CTTCTTACTCTACCCTGTCTGTGGGCATCAATACCTCCCCGCCCCCCTCC
TCCCGTCGCGACCAGGCGCGCTCGCTCCCCAAGGCCCAAGCGCTGGCGCT
GCAATTACAAGCATCAACAAGGGCACTTGGAACGGAGGTAACGGCCACGA
GTGCGACAGCAACGAGGGGCTGACGGACTGCGCCGGGCTGCCTGTGCGTT
TCTGCCCCCTCCTGGCGGCAGAGAGTGTGGTGAGTGTATCCATGGTACTT
CGAAGTAAAAAATGTGATTGTGTTTGCCCAAATAGTTGTTTGCAATATCG
AAAATTTTCGACCAAACTGCGATCGAACACCAGCCCAAATATCGAAAAAA
CATGCCAAAATATCGATGCCGAGCCACAAAATGCCGTATCAAGGTGTGGA
AACCCCTAGGATTTTGCCACGGGTGGGTATACCCGCCAAAGTCCGTTGGG
TTTCCACACCGTGATACGGCGGTTCGGCATTGGAGGCCCAAAAACTTGCC
CAAATATCGATAGGTATTTTCCCGAAAATATCGATTTCCTCGACCTATGG
CCCCAAATTGCCACTTTTTTGTTGCACCACGGTCACCCTAGGTGGGGTAC
CGCGGCTGCCCCCTGGTGGTGTGCCAGCTGGTGCAGGGGCTGCTCAAGAT
CGACCCCGCACAGCGCACCAGCGCCGGTGCCGGCCTCAGCGTGTGCACCT
GGCTGGTGCGCCAGCTGGAGGAAGCCGAGGCCGCTGCCGCTGCCGCCGCA
GCCCCTGCTGCTGCCGACGGCAGCGGCGGAGGGGGTGGTGGTCATGGTCG
TCGTTGTGGTGGTGATGGTACTGGTGGCGGTGGTGGTGGTGGTGGTGCTG
CTGCTCCGGCTGGCGGTGCCGTCGCTGCTGCTGCCTACACGACTGCGGTG
GCGCCTCGGGGGCGGGGACCGGCACATCCACTCAAAGAACTTCCTGCTTT
GTCATCATCGACGACAGCAACGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:120178..125001-

>mRNA_S-ischiensis_contig85.20116.1 ID=mRNA_S-ischiensis_contig85.20116.1|Name=mRNA_S-ischiensis_contig85.20116.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1650bp|location=Sequence derived from alignment at S-ischiensis_contig85:120178..125001- (Schizocladia ischiensis KU_0333)
GGCGGTGCTGAGGCTGGCTTGGGGGCTGTGCCGGGGCGACGTGGCGGGGC
TATAGTAGGTGTGGAGGGCATGGTGATGGAGTTTGACGACAGGCATTCCG
TGGGCGCGCCGTCTTTTATGGCTCCGGAGATTGCCAGGGGGCACCGGGAG
AGGGCCCCCCTGGACTACTCCAACAGTGACGGCGGTGCTGAGGCTGGCTT
GGGGGCTGTGCCGGGGCGACGTGGCGGGGCTATAGTAGGTGTGGAGGGCA
TGGTGATGGAGTTTGACGACAGGCATTCCGTGGGCGCGCCGTCTTTTATG
GCTCCGGAGATTGCCAGGGGGCACCGGGAGAGGGCCCCCCTGGACTACTC
CAACAGTGACGTGTACTCTGTGGGCATGTGCGCATACAAAATGCTGTGCG
AGCAAGGGGCGGAGCCCTTCAGGACCCGCCAGCGCATGGACGCTAAGAGA
GAGGGGCACGGTGTACTCTGTGGGCATGTGCGCATACAAAATGCTGTGCG
AGCAAGGGGCGGAGCCCTTCAGGACCCGCCAGCGCATGGACGCTAAGAGA
GAGGGGCACGGCGCGCTCGCTCCCCAAGGCCCAAGCGCTGGCGCTGCAAT
TACAAGCATCAACAAGGGCACTTGGAACGGAGGTAACGGCCACGAGTGCG
ACAGCAACGAGGGGCTGACGGACTGCGCCGGGCTGCCTGTGCGTTTCTGC
CCCCTCCTGGCGGCAGAGAGTGTGGCGCGCTCGCTCCCCAAGGCCCAAGC
GCTGGCGCTGCAATTACAAGCATCAACAAGGGCACTTGGAACGGAGGTAA
CGGCCACGAGTGCGACAGCAACGAGGGGCTGACGGACTGCGCCGGGCTGC
CTGTGCGTTTCTGCCCCCTCCTGGCGGCAGAGAGTGTGGTGGGGTACCGC
GGCTGCCCCCTGGTGGTGTGCCAGCTGGTGCAGGGGCTGCTCAAGATCGA
CCCCGCACAGCGCACCAGCGCCGGTGCCGGCCTCAGCGTGTGCACCTGGC
TGGTGCGCCAGCTGGAGGAAGCCGAGGCCGCTGCCGCTGCCGCCGCAGCC
CCTGCTGCTGCCGACGGCAGCGGCGGAGGGGGTGGTGGTCATGGTCGTCG
TTGTGGTGGTGATGGTACTGGTGGCGGTGGTGGTGGTGGTGGTGCTGCTG
CTCCGGCTGGCGGTGCCGTCGCTGCTGCTGCCTACACGACTGCGGTGGCG
CCTCGGGGGCGGGGACCGGCACATCCACTCAAAGAACTTCCTGCTTTGTC
ATCATCGACGACAGCAACGGTGGGGTACCGCGGCTGCCCCCTGGTGGTGT
GCCAGCTGGTGCAGGGGCTGCTCAAGATCGACCCCGCACAGCGCACCAGC
GCCGGTGCCGGCCTCAGCGTGTGCACCTGGCTGGTGCGCCAGCTGGAGGA
AGCCGAGGCCGCTGCCGCTGCCGCCGCAGCCCCTGCTGCTGCCGACGGCA
GCGGCGGAGGGGGTGGTGGTCATGGTCGTCGTTGTGGTGGTGATGGTACT
GGTGGCGGTGGTGGTGGTGGTGGTGCTGCTGCTCCGGCTGGCGGTGCCGT
CGCTGCTGCTGCCTACACGACTGCGGTGGCGCCTCGGGGGCGGGGACCGG
CACATCCACTCAAAGAACTTCCTGCTTTGTCATCATCGACGACAGCAACG
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