mRNA_S-ischiensis_contig85.20112.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20112.1
Unique NamemRNA_S-ischiensis_contig85.20112.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:84495..85296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size257
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817339.1622255-CDS-S-ischiensis_contig85:84495..845911622817339.1622255-CDS-S-ischiensis_contig85:84495..84591Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 84496..84591 -
1695741039.4292014-CDS-S-ischiensis_contig85:84495..845911695741039.4292014-CDS-S-ischiensis_contig85:84495..84591Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 84496..84591 -
1622817339.175124-CDS-S-ischiensis_contig85:85137..852961622817339.175124-CDS-S-ischiensis_contig85:85137..85296Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 85138..85296 -
1695741039.4434273-CDS-S-ischiensis_contig85:85137..852961695741039.4434273-CDS-S-ischiensis_contig85:85137..85296Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 85138..85296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20112.1prot_S-ischiensis_contig85.20112.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 84496..85296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20112.1

>prot_S-ischiensis_contig85.20112.1 ID=prot_S-ischiensis_contig85.20112.1|Name=mRNA_S-ischiensis_contig85.20112.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=85bp
ADPAPLDEPGKKASSSRKRKRPEDVATALEAYTAAAVELAEGGQGQGSVE
IAKVVKAAMRWCPWDMSLSNSLLKSLVPSEPVSQE
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mRNA from alignment at S-ischiensis_contig85:84495..85296-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20112.1 ID=mRNA_S-ischiensis_contig85.20112.1|Name=mRNA_S-ischiensis_contig85.20112.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=802bp|location=Sequence derived from alignment at S-ischiensis_contig85:84495..85296- (Schizocladia ischiensis KU_0333)
GCCGACCCGGCACCCCTCGATGAACCGGGAAAAAAGGCAAGCTCTTCGCG
CAAGCGCAAACGGCCAGAGGATGTAGCCACCGCGCTGGAGGCGTACACGG
CGGCCGCGGTTGAATTGGCCGAAGGTGGGCAGGGCCAGGGATCCGTGGAA
ATCGCCAAGGTGAGCGTACGGAGCTCGATCCTTCAGCGCAAGCCTGCGTC
CGTGGTTGTGATCCTCCCCTGGCCCAGGCCTCTTGGGGTCAATCGCTGTT
CAGCCATGCGTTGAGTGGTCCTCAGACTTTTCTTGTCCCTGACCAACTTA
CTACTCAAGCCGCTGGCAACCCAAAGAGGCCAGGAGCGCGCCGCAGTCAG
CCGTTGAAGTTTGACGCCTGCCCAGGTGGTGACGCGGTACCCCAAAGAGC
TGAGTAGTGTGTCTACTGGTAGTTCACCCCTTGAGTTTAAGGCCTGCCCA
GGTGGTGATGCTGGCAACCCAAACAGTTGAGTAGTGCGTCTACTGTAGTT
AACCATTTGAGTTTAACGCCTGCCCAGGTGGTGACGCTGGTGACCCAAAG
AGTTGAGTAGTGCGTCTAGTACTGTAGTAGTAGTTAACCCCTTGAGTTTA
ACGCCTGCCCAGGTAGTGAAGGCAGCCATACACTGGTGGCCCAAAGGGTT
GAGTAGTGCCTCTTCTACTGTAGTAATTAACCCTTTGAGTTGAATGCCTG
CCCAGGTGGTGAAGGCAGCCATGCGCTGGTGTCCCTGGGACATGTCTCTG
AGCAACTCCCTCCTCAAGTCCCTGGTGCCCTCAGAGCCCGTGTCGCAGGA
GG
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:84495..85296-

>mRNA_S-ischiensis_contig85.20112.1 ID=mRNA_S-ischiensis_contig85.20112.1|Name=mRNA_S-ischiensis_contig85.20112.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=510bp|location=Sequence derived from alignment at S-ischiensis_contig85:84495..85296- (Schizocladia ischiensis KU_0333)
GCCGACCCGGCACCCCTCGATGAACCGGGAAAAAAGGCAAGCTCTTCGCG
CAAGCGCAAACGGCCAGAGGATGTAGCCACCGCGCTGGAGGCGTACACGG
CGGCCGCGGTTGAATTGGCCGAAGGTGGGCAGGGCCAGGGATCCGTGGAA
ATCGCCAAGGCCGACCCGGCACCCCTCGATGAACCGGGAAAAAAGGCAAG
CTCTTCGCGCAAGCGCAAACGGCCAGAGGATGTAGCCACCGCGCTGGAGG
CGTACACGGCGGCCGCGGTTGAATTGGCCGAAGGTGGGCAGGGCCAGGGA
TCCGTGGAAATCGCCAAGGTGGTGAAGGCAGCCATGCGCTGGTGTCCCTG
GGACATGTCTCTGAGCAACTCCCTCCTCAAGTCCCTGGTGCCCTCAGAGC
CCGTGTCGCAGGAGGTGGTGAAGGCAGCCATGCGCTGGTGTCCCTGGGAC
ATGTCTCTGAGCAACTCCCTCCTCAAGTCCCTGGTGCCCTCAGAGCCCGT
GTCGCAGGAG
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