mRNA_S-ischiensis_contig85.20107.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig85.20107.1
Unique NamemRNA_S-ischiensis_contig85.20107.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig85.20107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig85contigS-ischiensis_contig85:21979..22560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817339.120831-CDS-S-ischiensis_contig85:21980..222261622817339.120831-CDS-S-ischiensis_contig85:21980..22226Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 21981..22226 -
1695741039.406069-CDS-S-ischiensis_contig85:21980..222261695741039.406069-CDS-S-ischiensis_contig85:21980..22226Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 21981..22226 -
1622817339.1329648-CDS-S-ischiensis_contig85:22482..225601622817339.1329648-CDS-S-ischiensis_contig85:22482..22560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 22483..22560 -
1695741039.4179091-CDS-S-ischiensis_contig85:22482..225601695741039.4179091-CDS-S-ischiensis_contig85:22482..22560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig85 22483..22560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig85.20107.1prot_S-ischiensis_contig85.20107.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig85 21981..22560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig85.20107.1

>prot_S-ischiensis_contig85.20107.1 ID=prot_S-ischiensis_contig85.20107.1|Name=mRNA_S-ischiensis_contig85.20107.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=108bp
SSDPIALLSSLDVAHPGVAVIADALAGMEAAFGTGTTTLAALLGNLCSEQ
MRLQHVGVPGRAIADGSRHTEAICSQILAHLAAPVPPVHRQQQNPGRSSG
SEGVFYEE
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mRNA from alignment at S-ischiensis_contig85:21979..22560-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig85.20107.1 ID=mRNA_S-ischiensis_contig85.20107.1|Name=mRNA_S-ischiensis_contig85.20107.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=582bp|location=Sequence derived from alignment at S-ischiensis_contig85:21979..22560- (Schizocladia ischiensis KU_0333)
TCCTCGGACCCCATTGCCTTGCTGTCCTCCCTTGATGTCGCGCACCCGGG
CGTAGCGGTCATCGCCGATGCCCTTGCGGTGAGTTGCTTGGAGGCTGGCC
TGTGGTCCTGGGGAGGACTGTCTCATGGTGGAACTATCTTCCAGAAGCAT
CGTTCTACGGCGGGAGCAAGTCTTTCGTCCTGTGCTGAGTGCCCCGCGCA
GCCAGTTCGTTGTTTGCCCCCCGTCTGCGTGAGGTCACCTCCAGCTCGCC
TCTCAAGTGTGCGCCTGACAGGACCACTTTGCTGCCTGCCCAACATGGCA
TGCCTGCATACGCTGGGCTGTTGTGAACAAGCAGGGCATGGAAGCAGCTT
TTGGCACCGGAACCACCACCTTGGCTGCCCTGCTCGGCAACCTGTGCTCC
GAGCAAATGCGCCTGCAGCATGTCGGGGTGCCGGGGCGAGCCATTGCAGA
TGGATCCCGGCACACTGAGGCCATTTGCTCCCAGATCCTCGCTCACTTGG
CGGCTCCAGTGCCCCCCGTGCATAGGCAGCAACAGAACCCCGGGCGGTCC
TCTGGTTCGGAAGGCGTTTTCTATGAGGAGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig85:21979..22560-

>mRNA_S-ischiensis_contig85.20107.1 ID=mRNA_S-ischiensis_contig85.20107.1|Name=mRNA_S-ischiensis_contig85.20107.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=648bp|location=Sequence derived from alignment at S-ischiensis_contig85:21979..22560- (Schizocladia ischiensis KU_0333)
TCCTCGGACCCCATTGCCTTGCTGTCCTCCCTTGATGTCGCGCACCCGGG
CGTAGCGGTCATCGCCGATGCCCTTGCGTCCTCGGACCCCATTGCCTTGC
TGTCCTCCCTTGATGTCGCGCACCCGGGCGTAGCGGTCATCGCCGATGCC
CTTGCGGGCATGGAAGCAGCTTTTGGCACCGGAACCACCACCTTGGCTGC
CCTGCTCGGCAACCTGTGCTCCGAGCAAATGCGCCTGCAGCATGTCGGGG
TGCCGGGGCGAGCCATTGCAGATGGATCCCGGCACACTGAGGCCATTTGC
TCCCAGATCCTCGCTCACTTGGCGGCTCCAGTGCCCCCCGTGCATAGGCA
GCAACAGAACCCCGGGCGGTCCTCTGGTTCGGAAGGCGTTTTCTATGAGG
AGGGCATGGAAGCAGCTTTTGGCACCGGAACCACCACCTTGGCTGCCCTG
CTCGGCAACCTGTGCTCCGAGCAAATGCGCCTGCAGCATGTCGGGGTGCC
GGGGCGAGCCATTGCAGATGGATCCCGGCACACTGAGGCCATTTGCTCCC
AGATCCTCGCTCACTTGGCGGCTCCAGTGCCCCCCGTGCATAGGCAGCAA
CAGAACCCCGGGCGGTCCTCTGGTTCGGAAGGCGTTTTCTATGAGGAG
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