mRNA_S-ischiensis_contig84.20101.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20101.1
Unique NamemRNA_S-ischiensis_contig84.20101.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig84.20101.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 2.230e-25
Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:  190 RNVDVRVWVTRPHLAVLEFPRSPNSSALVLEAEAGVYYRWQWLAILEVVHMEVVVKGLAGIVVNAYHGAAASRGIRG 420
            R++DVRVWVTRPH+AVLEFP S N+SA +LE E G+YYRWQ L I +V+HME  V+GLA I+VNAY GA+ SRG RG
Sbjct: 3174 RSIDVRVWVTRPHIAVLEFPLSRNTSAFLLEGEQGIYYRWQSLIIAQVIHMEAAVQGLAAIIVNAYRGASESRGARG 3250
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BLAST of mRNA_S-ischiensis_contig84.20101.1 vs. uniprot
Match: A0A7S1TZN9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZN9_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 5.180e-6
Identity = 32/77 (41.56%), Postives = 45/77 (58.44%), Query Frame = 1 
Query:  199 DVRVWVTRPHLAVLEFPRSPNSSALVLEAEAGVYYRWQ---WLAILEVVHMEVVVKGLAGIVVNAYHGAAASRGIRG 420
            DVRVWVTRP + +++ P   NS   ++EA+ G Y +W+   W  +     MEV+V+  A I+   Y GA   RGIRG
Sbjct:    1 DVRVWVTRPCIGLMQKPHMLNSMTTIVEAQ-GAYVQWKKEGWGPM----RMEVIVQDAAIILRKGYKGAQLERGIRG 72
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8Y9_ECTSI2.230e-2567.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1TZN9_9STRA5.180e-641.56Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:661673..663485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue3.7e-22
Seed eggNOG ortholog2880.D7G8Y9
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size422
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817338.9057682-CDS-S-ischiensis_contig84:661672..6620021622817338.9057682-CDS-S-ischiensis_contig84:661672..662002Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 661673..662002 +
1695741039.2840822-CDS-S-ischiensis_contig84:661672..6620021695741039.2840822-CDS-S-ischiensis_contig84:661672..662002Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 661673..662002 +
1622817338.9165215-CDS-S-ischiensis_contig84:663395..6634851622817338.9165215-CDS-S-ischiensis_contig84:663395..663485Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 663396..663485 +
1695741039.3022187-CDS-S-ischiensis_contig84:663395..6634851695741039.3022187-CDS-S-ischiensis_contig84:663395..663485Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 663396..663485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20101.1prot_S-ischiensis_contig84.20101.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 661673..663485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20101.1

>prot_S-ischiensis_contig84.20101.1 ID=prot_S-ischiensis_contig84.20101.1|Name=mRNA_S-ischiensis_contig84.20101.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=140bp
EPVDDGRRTGLGPGRRGNDKTDDDPLAMAGLPGGLGREEVVAAAAAAAAA
EAAAAVALAPPPPRNVDVRVWVTRPHLAVLEFPRSPNSSALVLEAEAGVY
YRWQWLAILEVVHMEVVVKGLAGIVVNAYHGAAASRGIRG
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mRNA from alignment at S-ischiensis_contig84:661673..663485+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20101.1 ID=mRNA_S-ischiensis_contig84.20101.1|Name=mRNA_S-ischiensis_contig84.20101.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1813bp|location=Sequence derived from alignment at S-ischiensis_contig84:661673..663485+ (Schizocladia ischiensis KU_0333)
GAACCTGTCGATGATGGGCGCAGAACTGGGCTTGGGCCTGGCCGCCGGGG
CAATGACAAGACCGATGATGACCCACTGGCCATGGCCGGCCTCCCAGGAG
GGCTTGGAAGGGAGGAGGTGGTTGCGGCAGCGGCGGCGGCCGCTGCGGCG
GAGGCGGCGGCGGCGGTGGCGCTGGCGCCGCCGCCGCCAAGGAATGTGGA
CGTGAGGGTGTGGGTGACGAGGCCGCACCTGGCGGTGCTGGAGTTTCCGC
GGTCGCCCAATAGTAGCGCGCTTGTGCTGGAGGCGGAGGCGGGGGTGTAT
TATCGGTGGCAGTGGCTGGCTATTCTGGAGGTGGGTGCGGGGGGTGGGGG
TGGATGTCGTGGATTTTGTGCTGCTGCCAATACGAGTACTTGCTGAGTGT
TTACGGCTTTTTAGCTTTTTCTTGTCGTAGTCTGACGTGGTGCTCTCTAT
TTGGGCTTTTAACTGGTTAGTCCTCCCATTCACAACTGAGCCTGTACTGT
ACTGTACTGGACGGATGTGCTTGGACGGAAGGGGACTTAAACCTTTTATC
CCTGGTAAATTGGGCTTACACACTAAAACCCTATGACTATCCGGACCCCA
GGGGTAAAAGGGTTGACTGTACGTGCGCACTTAACCCTTTCACCCCTGGT
AAATTGGACTTACACACTACTGTAAAACCCCATGATTATACGGACCCCAG
GGGTAAAAGGGATGACTGTACGTGCACGCGAGTGCCGCACGAGTGTTTGT
TTGCGCGCGAGTGCGTGCAGATACTGCAGACAGCATGTACTGTAGCTCTA
GTGATGCAAGACAAGAAGCATGACTTGGATTAGTACAGTATAGTACGAGT
GCTTCTGTACTACTCCAAGTACTTTGAAGACAAGAAGTACTGTACAGTAC
TACTCCAAGTACTGCAGCACAGCATGTACTGTAGCTCTAGTGATCCAAGT
ACTTGGAGTAGTACTGTACAGTACGAGTGCCGCTGTACACTACTGTACTG
TGCGGGTAGTACGGGACCATACGGGTGTTACTGTACAGTACGGGTACACT
GAACAGTACGAGTGCTGCTGCGCAGTACGAGTGCTACTGTATGGTACGAG
TACTCCTGTACAGTGCGGGCACTACTGTACAGTACGCGTACTACTGTACA
GTAGGAGTGCTACTGTACAGTATGAGTACTACTGTACGGTAGGGGTGCTA
CTGTACAGTATGAGTACTACTGTATGGTAGGAGTGCTACTGTATGGTACG
AATACTACTGTACGGTACGAGTGCTACTGTACAGTACTGTTCCGTACATC
GCTTGCTGCAACGTGCTCCCCAGCTGCTTGGAAGTACTTGGAAGGTGTGT
ACAATTGCTGTACCATTGTACTTGGAGGCACAGTAAGCAATAGTGACTGC
CAGCTGTACAGCATATGCTACGTAGTATATTTGTCTGCACCTCTCTCCAA
CTCTCATCCTCTCTCGCTCCCTCTCTCTATCCCCCCCCCCCCGccccCCC
CCCTGCGCGCTCCTCTCTCTTCCCGCCCCTCTCTCCCACCCTCCATCTCC
CTCTCTCTCCCGTCCTCCCTCTCCCTCCCTCCCTCGCTTCCTCCCTCCCT
CCCCTCCACCTCTCAAGAAATGTCACTGACTCCCGGCCCGGAACGTCCCG
CGCGCATCACTGTTGTGCTATCCCCCCCCCCCCCCAATGTGTCGCACCAT
GCACAACAACACACCCATCGCAGGTGGTGCACATGGAAGTAGTGGTGAAG
GGCCTGGCCGGCATCGTCGTGAACGCCTACCATGGTGCCGCCGCCTCCCG
GGGGATACGGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:661673..663485+

>mRNA_S-ischiensis_contig84.20101.1 ID=mRNA_S-ischiensis_contig84.20101.1|Name=mRNA_S-ischiensis_contig84.20101.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=840bp|location=Sequence derived from alignment at S-ischiensis_contig84:661673..663485+ (Schizocladia ischiensis KU_0333)
GAACCTGTCGATGATGGGCGCAGAACTGGGCTTGGGCCTGGCCGCCGGGG
CAATGACAAGACCGATGATGACCCACTGGCCATGGCCGGCCTCCCAGGAG
GGCTTGGAAGGGAGGAGGTGGTTGCGGCAGCGGCGGCGGCCGCTGCGGCG
GAGGCGGCGGCGGCGGTGGCGCTGGCGCCGCCGCCGCCAAGGAATGTGGA
CGTGAGGGTGTGGGTGACGAGGCCGCACCTGGCGGTGCTGGAGTTTCCGC
GGTCGCCCAATAGTAGCGCGCTTGTGCTGGAGGCGGAGGCGGGGGTGTAT
TATCGGTGGCAGTGGCTGGCTATTCTGGAGGAACCTGTCGATGATGGGCG
CAGAACTGGGCTTGGGCCTGGCCGCCGGGGCAATGACAAGACCGATGATG
ACCCACTGGCCATGGCCGGCCTCCCAGGAGGGCTTGGAAGGGAGGAGGTG
GTTGCGGCAGCGGCGGCGGCCGCTGCGGCGGAGGCGGCGGCGGCGGTGGC
GCTGGCGCCGCCGCCGCCAAGGAATGTGGACGTGAGGGTGTGGGTGACGA
GGCCGCACCTGGCGGTGCTGGAGTTTCCGCGGTCGCCCAATAGTAGCGCG
CTTGTGCTGGAGGCGGAGGCGGGGGTGTATTATCGGTGGCAGTGGCTGGC
TATTCTGGAGGTGGTGCACATGGAAGTAGTGGTGAAGGGCCTGGCCGGCA
TCGTCGTGAACGCCTACCATGGTGCCGCCGCCTCCCGGGGGATACGGGGC
GTGGTGCACATGGAAGTAGTGGTGAAGGGCCTGGCCGGCATCGTCGTGAA
CGCCTACCATGGTGCCGCCGCCTCCCGGGGGATACGGGGC
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