mRNA_S-ischiensis_contig84.20099.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20099.1
Unique NamemRNA_S-ischiensis_contig84.20099.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig84.20099.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 7.180e-64
Identity = 108/175 (61.71%), Postives = 134/175 (76.57%), Query Frame = 1 
Query:    1 GEGA---LRWREVTEEPFDMVLLVDAGPALGRPRTLIALPEYGAAEQEAGVQGQARXXXXXXXRPPGLYIRPTMGQYYLLLSVYFDNYCELDCFFGPLAPGESPW-PAAPVAENWPGYGTPEMLRRVVARPESWHFAVSVPVLEAGVSIETRYFPQRPRSIWMAQTP--PPGGAP 507
            GEG    LRWRE+TE+PFD++LLVD G  LG  R L+ +PEYG  E+E   +G+ R       +P GLYI PTM +YYLLLSVYFDNYCELDCF+GP  PGESP  PAAPVAE+WP YGTP M++RV+ RPE W+F++S+P+LEA +S++TRYFP+RP S+WMAQTP  PPG  P
Sbjct: 2778 GEGQQQLLRWREITEQPFDLMLLVDTGKELGHSRILLTMPEYGV-EEEDRARGEGR-------KPGGLYICPTMAEYYLLLSVYFDNYCELDCFYGPPGPGESPGGPAAPVAEDWPPYGTPAMVQRVLTRPEKWNFSISIPLLEASLSMDTRYFPERPASMWMAQTPQNPPGSEP 2944
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BLAST of mRNA_S-ischiensis_contig84.20099.1 vs. uniprot
Match: A0A6H5KKF1_9PHAE (VPS13 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF1_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 2.600e-52
Identity = 91/152 (59.87%), Postives = 116/152 (76.32%), Query Frame = 1 
Query:    1 GEGA---LRWREVTEEPFDMVLLVDAGPALGRPRTLIALPEYGAAEQEAGVQGQARXXXXXXXRPPGLYIRPTMGQYYLLLSVYFDNYCELDCFFGPLAPGESPW-PAAPVAENWPGYGTPEMLRRVVARPESWHFAVSVPVLEAGVSIETR 444
            GEG    LRWRE+T++PFD++LLVD G  LG  R L+ +PEYG  E+E   +G+ R       +P GLYI PTM +YYLLLSVYFDNYCELDCF+GP  PGESP  PAAPVAE+WP YGTP M++RV+ RPE W+F++S+P+LEA +S++TR
Sbjct: 2812 GEGQQQLLRWREITQQPFDLMLLVDTGKELGHSRILLTMPEYGV-EEEDRARGEGR-------KPGGLYICPTMAEYYLLLSVYFDNYCELDCFYGPPGPGESPGGPAAPVAEDWPPYGTPAMVQRVLTRPEKWNFSISIPLLEASLSMDTR 2955
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8Y9_ECTSI7.180e-6461.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKF1_9PHAE2.600e-5259.87VPS13 domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:659812..660329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.4
Seed ortholog evalue8.1e-56
Seed eggNOG ortholog2880.D7G8Y9
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size520
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817338.8746936-CDS-S-ischiensis_contig84:659811..6603271622817338.8746936-CDS-S-ischiensis_contig84:659811..660327Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 659812..660327 +
1695741039.2710712-CDS-S-ischiensis_contig84:659811..6603271695741039.2710712-CDS-S-ischiensis_contig84:659811..660327Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 659812..660327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20099.1prot_S-ischiensis_contig84.20099.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 659812..660327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20099.1

>prot_S-ischiensis_contig84.20099.1 ID=prot_S-ischiensis_contig84.20099.1|Name=mRNA_S-ischiensis_contig84.20099.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=172bp
GEGALRWREVTEEPFDMVLLVDAGPALGRPRTLIALPEYGAAEQEAGVQG
QARGQGQGQGRPPGLYIRPTMGQYYLLLSVYFDNYCELDCFFGPLAPGES
PWPAAPVAENWPGYGTPEMLRRVVARPESWHFAVSVPVLEAGVSIETRYF
PQRPRSIWMAQTPPPGGAPNHH
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mRNA from alignment at S-ischiensis_contig84:659812..660329+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20099.1 ID=mRNA_S-ischiensis_contig84.20099.1|Name=mRNA_S-ischiensis_contig84.20099.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=518bp|location=Sequence derived from alignment at S-ischiensis_contig84:659812..660329+ (Schizocladia ischiensis KU_0333)
GGGGAGGGGGCCTTACGGTGGCGGGAGGTGACGGAGGAGCCCTTCGACAT
GGTGCTGCTGGTGGACGCAGGGCCGGCGCTGGGGCGGCCGCGGACGCTGA
TCGCGCTGCCCGAGTACGGCGCCGCGGAGCAGGAGGCGGGGGTGCAGGGC
CAGGCCCGGGGGCAGGGCCAGGGCCAGGGCCGCCCGCCCGGGCTGTACAT
CCGGCCCACCATGGGGCAGTACTACCTGCTCCTGAGCGTCTACTTTGACA
ACTACTGCGAGCTGGACTGTTTCTTCGGGCCGCTGGCGCCGGGGGAGTCC
CCCTGGCCGGCGGCGCCCGTGGCCGAGAACTGGCCGGGCTACGGGACCCC
GGAGATGCTGCGGAGGGTGGTGGCCCGGCCGGAGAGCTGGCACTTCGCGG
TGAGCGTCCCCGTCCTGGAGGCAGGCGTCTCCATTGAGACGCGCTACTTC
CCCCAGCGCCCGCGCAGCATCTGGATGGCGCAGACCCCTCCCCCGGGGGG
GGCGCCGAATCATCATCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:659812..660329+

>mRNA_S-ischiensis_contig84.20099.1 ID=mRNA_S-ischiensis_contig84.20099.1|Name=mRNA_S-ischiensis_contig84.20099.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1032bp|location=Sequence derived from alignment at S-ischiensis_contig84:659812..660329+ (Schizocladia ischiensis KU_0333)
GGGGAGGGGGCCTTACGGTGGCGGGAGGTGACGGAGGAGCCCTTCGACAT
GGTGCTGCTGGTGGACGCAGGGCCGGCGCTGGGGCGGCCGCGGACGCTGA
TCGCGCTGCCCGAGTACGGCGCCGCGGAGCAGGAGGCGGGGGTGCAGGGC
CAGGCCCGGGGGCAGGGCCAGGGCCAGGGCCGCCCGCCCGGGCTGTACAT
CCGGCCCACCATGGGGCAGTACTACCTGCTCCTGAGCGTCTACTTTGACA
ACTACTGCGAGCTGGACTGTTTCTTCGGGCCGCTGGCGCCGGGGGAGTCC
CCCTGGCCGGCGGCGCCCGTGGCCGAGAACTGGCCGGGCTACGGGACCCC
GGAGATGCTGCGGAGGGTGGTGGCCCGGCCGGAGAGCTGGCACTTCGCGG
TGAGCGTCCCCGTCCTGGAGGCAGGCGTCTCCATTGAGACGCGCTACTTC
CCCCAGCGCCCGCGCAGCATCTGGATGGCGCAGACCCCTCCCCCGGGGGG
GGCGCCGAATCATCATGGGGAGGGGGCCTTACGGTGGCGGGAGGTGACGG
AGGAGCCCTTCGACATGGTGCTGCTGGTGGACGCAGGGCCGGCGCTGGGG
CGGCCGCGGACGCTGATCGCGCTGCCCGAGTACGGCGCCGCGGAGCAGGA
GGCGGGGGTGCAGGGCCAGGCCCGGGGGCAGGGCCAGGGCCAGGGCCGCC
CGCCCGGGCTGTACATCCGGCCCACCATGGGGCAGTACTACCTGCTCCTG
AGCGTCTACTTTGACAACTACTGCGAGCTGGACTGTTTCTTCGGGCCGCT
GGCGCCGGGGGAGTCCCCCTGGCCGGCGGCGCCCGTGGCCGAGAACTGGC
CGGGCTACGGGACCCCGGAGATGCTGCGGAGGGTGGTGGCCCGGCCGGAG
AGCTGGCACTTCGCGGTGAGCGTCCCCGTCCTGGAGGCAGGCGTCTCCAT
TGAGACGCGCTACTTCCCCCAGCGCCCGCGCAGCATCTGGATGGCGCAGA
CCCCTCCCCCGGGGGGGGCGCCGAATCATCAT
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