mRNA_S-ischiensis_contig84.20097.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20097.1
Unique NamemRNA_S-ischiensis_contig84.20097.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig84.20097.1 vs. uniprot
Match: A0A6H5KKF1_9PHAE (VPS13 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 4.350e-7
Identity = 73/161 (45.34%), Postives = 83/161 (51.55%), Query Frame = 2 
Query:    8 QRRTLLCLLRASVDGVGLLDLTADGQLHHEVITH--------AAFPQQRNXXXXXXXXXXXXXXXXXXXKPPAILFIEMAQYLAPLPRXXXXXXXXXXXXXXXXXXXXXXXXXXARPR----RSLDISVRGLRVCYLRRFFAELGKYFGEDGLGSALAAFR 454
            + RT L  LRAS+ G+ LLDLTADGQLH++VI+H        AA     N XXXXXXXXXXXX          +   E A        XXXXXXXXXX                 R      R +  SVRGLRVC+L RF AE+ KYFG D LG   A  R
Sbjct: 2020 RHRTALGYLRASLQGLELLDLTADGQLHNQVISHEGAAPGATAASHATANAXXXXXXXXXXXXHRASSSASRGVRAHETAXXXXXXXXXXXXXXXXXXERLPVIVVELTPDTSRGRGSGGGGREIIASVRGLRVCFLHRFVAEVTKYFGPDRLGPVFAEAR 2180
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKF1_9PHAE4.350e-745.34VPS13 domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:656829..657284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size457
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817333.9673314-CDS-S-ischiensis_contig84:656828..6572841622817333.9673314-CDS-S-ischiensis_contig84:656828..657284Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 656829..657284 +
1695741035.1241553-CDS-S-ischiensis_contig84:656828..6572841695741035.1241553-CDS-S-ischiensis_contig84:656828..657284Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 656829..657284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20097.1prot_S-ischiensis_contig84.20097.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 656829..657284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20097.1

>prot_S-ischiensis_contig84.20097.1 ID=prot_S-ischiensis_contig84.20097.1|Name=mRNA_S-ischiensis_contig84.20097.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=152bp
GVAETDPPLPAARERGRRGAPGPDRRRPAAPRGDHARRLPPATKPPALLR
WRRGCGGGGGGGAKAAGDSLYRDGAVPGPSSAAATTAGRGRRRGPGPGPW
SGPGPGQGRPPPSLPGHLRAGPPRVLPSAFLCRAGQILWRGWAGVRAGRV
SG
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mRNA from alignment at S-ischiensis_contig84:656829..657284+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20097.1 ID=mRNA_S-ischiensis_contig84.20097.1|Name=mRNA_S-ischiensis_contig84.20097.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=456bp|location=Sequence derived from alignment at S-ischiensis_contig84:656829..657284+ (Schizocladia ischiensis KU_0333)
GGCGTGGCAGAGACGGACCCTCCTCTGCCTGCTGCGCGCGAGCGTGGACG
GCGTGGGGCTCCTGGACCTGACCGCAGACGGCCAGCTGCACCACGAGGTG
ATCACGCACGCCGCCTTCCCCCAGCAACGAAACCCCCCGCCCTCCTCCGC
TGGCGGCGGGGCTGCGGCGGCGGCGGCGGCGGCGGCGCCAAAGCCGCCGG
CGATTCTCTTTATCGAGATGGCGCAGTACCTGGCCCCTCTTCCGCGGCCG
CCACCACCGCCGGGAGAGGGCGACGGAGGGGCCCAGGGCCAGGGCCATGG
TCAGGGCCAGGGCCGGGCCAGGGCCGCCCGCCCCCGTCGCTCCCTGGACA
TCTCCGTGCGGGGCCTCCGCGTGTGCTACCTTCGGCGTTTCTTTGCCGAG
CTGGGCAAATACTTTGGAGAGGATGGGCTGGGGTCCGCGCTGGCCGCGTT
TCGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:656829..657284+

>mRNA_S-ischiensis_contig84.20097.1 ID=mRNA_S-ischiensis_contig84.20097.1|Name=mRNA_S-ischiensis_contig84.20097.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=912bp|location=Sequence derived from alignment at S-ischiensis_contig84:656829..657284+ (Schizocladia ischiensis KU_0333)
GGCGTGGCAGAGACGGACCCTCCTCTGCCTGCTGCGCGCGAGCGTGGACG
GCGTGGGGCTCCTGGACCTGACCGCAGACGGCCAGCTGCACCACGAGGTG
ATCACGCACGCCGCCTTCCCCCAGCAACGAAACCCCCCGCCCTCCTCCGC
TGGCGGCGGGGCTGCGGCGGCGGCGGCGGCGGCGGCGCCAAAGCCGCCGG
CGATTCTCTTTATCGAGATGGCGCAGTACCTGGCCCCTCTTCCGCGGCCG
CCACCACCGCCGGGAGAGGGCGACGGAGGGGCCCAGGGCCAGGGCCATGG
TCAGGGCCAGGGCCGGGCCAGGGCCGCCCGCCCCCGTCGCTCCCTGGACA
TCTCCGTGCGGGGCCTCCGCGTGTGCTACCTTCGGCGTTTCTTTGCCGAG
CTGGGCAAATACTTTGGAGAGGATGGGCTGGGGTCCGCGCTGGCCGCGTT
TCGGGGGGCGTGGCAGAGACGGACCCTCCTCTGCCTGCTGCGCGCGAGCG
TGGACGGCGTGGGGCTCCTGGACCTGACCGCAGACGGCCAGCTGCACCAC
GAGGTGATCACGCACGCCGCCTTCCCCCAGCAACGAAACCCCCCGCCCTC
CTCCGCTGGCGGCGGGGCTGCGGCGGCGGCGGCGGCGGCGGCGCCAAAGC
CGCCGGCGATTCTCTTTATCGAGATGGCGCAGTACCTGGCCCCTCTTCCG
CGGCCGCCACCACCGCCGGGAGAGGGCGACGGAGGGGCCCAGGGCCAGGG
CCATGGTCAGGGCCAGGGCCGGGCCAGGGCCGCCCGCCCCCGTCGCTCCC
TGGACATCTCCGTGCGGGGCCTCCGCGTGTGCTACCTTCGGCGTTTCTTT
GCCGAGCTGGGCAAATACTTTGGAGAGGATGGGCTGGGGTCCGCGCTGGC
CGCGTTTCGGGG
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