mRNA_S-ischiensis_contig84.20095.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20095.1
Unique NamemRNA_S-ischiensis_contig84.20095.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:655367..656054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue6.2e-07
Seed eggNOG ortholog2880.D7G8Y9
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size352
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817338.8262305-CDS-S-ischiensis_contig84:655366..6554191622817338.8262305-CDS-S-ischiensis_contig84:655366..655419Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 655367..655419 +
1695741039.2473369-CDS-S-ischiensis_contig84:655366..6554191695741039.2473369-CDS-S-ischiensis_contig84:655366..655419Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 655367..655419 +
1622817338.8407571-CDS-S-ischiensis_contig84:655756..6560541622817338.8407571-CDS-S-ischiensis_contig84:655756..656054Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 655757..656054 +
1695741039.2607088-CDS-S-ischiensis_contig84:655756..6560541695741039.2607088-CDS-S-ischiensis_contig84:655756..656054Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 655757..656054 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20095.1prot_S-ischiensis_contig84.20095.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 655367..656054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20095.1

>prot_S-ischiensis_contig84.20095.1 ID=prot_S-ischiensis_contig84.20095.1|Name=mRNA_S-ischiensis_contig84.20095.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=117bp
GNGGPWALHLSMVECDSSHIFGAGGHPPKVLAAATALAAKLERWRGPGFS
GPVVPGGGAPGAGLAFLGPSDALLLRAIHRDRERRVTATAAAVSVAVAPG
GLLAAADAGHTLGRVAR
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mRNA from alignment at S-ischiensis_contig84:655367..656054+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20095.1 ID=mRNA_S-ischiensis_contig84.20095.1|Name=mRNA_S-ischiensis_contig84.20095.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=688bp|location=Sequence derived from alignment at S-ischiensis_contig84:655367..656054+ (Schizocladia ischiensis KU_0333)
GGGAATGGCGGGCCGTGGGCACTGCACCTGAGCATGGTGGAGTGTGACTC
CAGGTGGGTGAGGTGTCATTCGTCACTGTCGTCACGAGGGGCTGATTTAG
CAACGGGTCTCAGGTCGCGTCATGTGTACATGCTTACTTACAGCTGGCCC
CGTCCGTTCCCGTGCCACCGCCGCCACCGTGGCCGCGTGCACCTCCCCCC
CCCCCGCCCCTTCCCCTGTCTACTCATGTGTGCCGTCCATGGCTCGTGGC
GGCTGCACACACACACCATAAACTACACCGATGAACGCGTGCCCCCCCCC
CCCCGCCCCCACCCCAACCGCCGCCACCGCAACCACCACTGTTGTCTCAC
TGCACATGCCGCGCGCGGGCTCTCGTGCTACGCAACACAGCCATATCTTT
GGCGCGGGGGGCCACCCGCCCAAGGTGTTGGCGGCGGCCACCGCCCTCGC
GGCCAAGCTCGAACGCTGGCGCGGCCCCGGCTTTTCTGGGCCTGTGGTCC
CGGGGGGGGGGGCGCCGGGCGCAGGCCTCGCCTTCTTGGGCCCGTCCGAT
GCGCTGCTTCTCCGGGCCATCCACCGCGACCGTGAGCGGCGAGTGACGGC
GACGGCGGCCGCAGTGTCGGTGGCGGTGGCGCCGGGGGGGCTGCTGGCGG
CGGCGGACGCAGGGCACACGCTCGGAAGAGTGGCGCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:655367..656054+

>mRNA_S-ischiensis_contig84.20095.1 ID=mRNA_S-ischiensis_contig84.20095.1|Name=mRNA_S-ischiensis_contig84.20095.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=702bp|location=Sequence derived from alignment at S-ischiensis_contig84:655367..656054+ (Schizocladia ischiensis KU_0333)
GGGAATGGCGGGCCGTGGGCACTGCACCTGAGCATGGTGGAGTGTGACTC
CAGGGGAATGGCGGGCCGTGGGCACTGCACCTGAGCATGGTGGAGTGTGA
CTCCAGCCATATCTTTGGCGCGGGGGGCCACCCGCCCAAGGTGTTGGCGG
CGGCCACCGCCCTCGCGGCCAAGCTCGAACGCTGGCGCGGCCCCGGCTTT
TCTGGGCCTGTGGTCCCGGGGGGGGGGGCGCCGGGCGCAGGCCTCGCCTT
CTTGGGCCCGTCCGATGCGCTGCTTCTCCGGGCCATCCACCGCGACCGTG
AGCGGCGAGTGACGGCGACGGCGGCCGCAGTGTCGGTGGCGGTGGCGCCG
GGGGGGCTGCTGGCGGCGGCGGACGCAGGGCACACGCTCGGAAGAGTGGC
GCGGCCATATCTTTGGCGCGGGGGGCCACCCGCCCAAGGTGTTGGCGGCG
GCCACCGCCCTCGCGGCCAAGCTCGAACGCTGGCGCGGCCCCGGCTTTTC
TGGGCCTGTGGTCCCGGGGGGGGGGGCGCCGGGCGCAGGCCTCGCCTTCT
TGGGCCCGTCCGATGCGCTGCTTCTCCGGGCCATCCACCGCGACCGTGAG
CGGCGAGTGACGGCGACGGCGGCCGCAGTGTCGGTGGCGGTGGCGCCGGG
GGGGCTGCTGGCGGCGGCGGACGCAGGGCACACGCTCGGAAGAGTGGCGC
GG
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