mRNA_S-ischiensis_contig84.20092.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20092.1
Unique NamemRNA_S-ischiensis_contig84.20092.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:651353..651862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue1.6e-16
Seed eggNOG ortholog2880.D7G8Y9
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size511
Cds size510
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817338.7933936-CDS-S-ischiensis_contig84:651352..6518621622817338.7933936-CDS-S-ischiensis_contig84:651352..651862Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 651353..651862 +
1695741039.2343922-CDS-S-ischiensis_contig84:651352..6518621695741039.2343922-CDS-S-ischiensis_contig84:651352..651862Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 651353..651862 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20092.1prot_S-ischiensis_contig84.20092.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 651353..651862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20092.1

>prot_S-ischiensis_contig84.20092.1 ID=prot_S-ischiensis_contig84.20092.1|Name=mRNA_S-ischiensis_contig84.20092.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=170bp
DALGPGGGGGGGAPCNVAVCIRVDIRPRAEGASLASVAREVEEEERTEQA
IDLFEKKASSVDLNLVARLAPVSVRVCPVTVGSLAAFLRSSKVTVPGQVL
PPRPPALERLRALAAGRRACAAEGHATAEARSQGRRSLDVAAAGLEMRVE
LLEEEASAGGGGCGGVRAER
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mRNA from alignment at S-ischiensis_contig84:651353..651862+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20092.1 ID=mRNA_S-ischiensis_contig84.20092.1|Name=mRNA_S-ischiensis_contig84.20092.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=510bp|location=Sequence derived from alignment at S-ischiensis_contig84:651353..651862+ (Schizocladia ischiensis KU_0333)
GATGCCCTCGGGCCCGGCGGCGGCGGCGGCGGCGGCGCGCCTTGTAACGT
GGCCGTATGCATCCGCGTCGACATCAGGCCCCGCGCGGAGGGCGCCAGCC
TGGCCAGCGTGGCGCGGGAGGTGGAGGAGGAGGAGCGCACGGAGCAGGCC
ATCGACCTGTTCGAGAAGAAGGCTTCTTCCGTGGACCTCAACCTGGTGGC
CCGCCTTGCCCCCGTTTCGGTCCGCGTCTGCCCCGTGACGGTGGGTTCCC
TGGCAGCCTTCCTCCGCTCCTCTAAGGTGACGGTACCGGGGCAGGTGCTG
CCCCCCAGGCCCCCGGCCCTGGAGCGGCTCCGGGCGCTGGCGGCTGGGAG
GCGCGCGTGCGCCGCGGAGGGCCACGCCACCGCCGAGGCCCGGTCCCAGG
GCCGCCGGTCCCTGGATGTAGCCGCCGCGGGGCTGGAGATGAGGGTGGAA
CTCCTCGAGGAGGAGGCGTCTGCCGGCGGTGGTGGTTGCGGTGGGGTGAG
GGCGGAGAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:651353..651862+

>mRNA_S-ischiensis_contig84.20092.1 ID=mRNA_S-ischiensis_contig84.20092.1|Name=mRNA_S-ischiensis_contig84.20092.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1020bp|location=Sequence derived from alignment at S-ischiensis_contig84:651353..651862+ (Schizocladia ischiensis KU_0333)
GATGCCCTCGGGCCCGGCGGCGGCGGCGGCGGCGGCGCGCCTTGTAACGT
GGCCGTATGCATCCGCGTCGACATCAGGCCCCGCGCGGAGGGCGCCAGCC
TGGCCAGCGTGGCGCGGGAGGTGGAGGAGGAGGAGCGCACGGAGCAGGCC
ATCGACCTGTTCGAGAAGAAGGCTTCTTCCGTGGACCTCAACCTGGTGGC
CCGCCTTGCCCCCGTTTCGGTCCGCGTCTGCCCCGTGACGGTGGGTTCCC
TGGCAGCCTTCCTCCGCTCCTCTAAGGTGACGGTACCGGGGCAGGTGCTG
CCCCCCAGGCCCCCGGCCCTGGAGCGGCTCCGGGCGCTGGCGGCTGGGAG
GCGCGCGTGCGCCGCGGAGGGCCACGCCACCGCCGAGGCCCGGTCCCAGG
GCCGCCGGTCCCTGGATGTAGCCGCCGCGGGGCTGGAGATGAGGGTGGAA
CTCCTCGAGGAGGAGGCGTCTGCCGGCGGTGGTGGTTGCGGTGGGGTGAG
GGCGGAGAGGGATGCCCTCGGGCCCGGCGGCGGCGGCGGCGGCGGCGCGC
CTTGTAACGTGGCCGTATGCATCCGCGTCGACATCAGGCCCCGCGCGGAG
GGCGCCAGCCTGGCCAGCGTGGCGCGGGAGGTGGAGGAGGAGGAGCGCAC
GGAGCAGGCCATCGACCTGTTCGAGAAGAAGGCTTCTTCCGTGGACCTCA
ACCTGGTGGCCCGCCTTGCCCCCGTTTCGGTCCGCGTCTGCCCCGTGACG
GTGGGTTCCCTGGCAGCCTTCCTCCGCTCCTCTAAGGTGACGGTACCGGG
GCAGGTGCTGCCCCCCAGGCCCCCGGCCCTGGAGCGGCTCCGGGCGCTGG
CGGCTGGGAGGCGCGCGTGCGCCGCGGAGGGCCACGCCACCGCCGAGGCC
CGGTCCCAGGGCCGCCGGTCCCTGGATGTAGCCGCCGCGGGGCTGGAGAT
GAGGGTGGAACTCCTCGAGGAGGAGGCGTCTGCCGGCGGTGGTGGTTGCG
GTGGGGTGAGGGCGGAGAGG
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