mRNA_S-ischiensis_contig84.20088.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20088.1
Unique NamemRNA_S-ischiensis_contig84.20088.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig84.20088.1 vs. uniprot
Match: D8LS34_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS34_ECTSI)

HSP 1 Score: 486 bits (1251), Expect = 2.050e-164
Identity = 234/298 (78.52%), Postives = 263/298 (88.26%), Query Frame = 2 
Query:  287 MQSLFGFNQSATILVEFDHVDKRPTKPAMVADKKAPEPLPVFKGTEPVSGTVTVLVAPGKKVEHQGIKCEMIGQIEVYYDRGNHYEFSSLVRELDTSGILFGNRQFRFDFSAVEKPYETYSGLNVRLRYFVRVTISKPYGNITKDHDFIVQNVEPEXXXXPSLKMEVGIEECLHIEFEYDKGKYHVQDVVIGKIYFLLVRIKIKHMELAIIRRETAGQGPNQYNESETLVKYEVMDGAPAKGECIPLRIFLKPYGLTPTYTRVNNKFSVKYFLNLVLVDEEDRRYFKQQEVTLWRKYV 1180
            MQ+LFGFN   TILVEFDH+DKRPTKP+   D++A E LP+F+G+E VSGT TVLVAPGKKV+H GIK E+IGQIE+YYDRGNHYEFSS+VRELDT+G L GNRQ+RFDF+  EKPYE+YSGLNVRLRYFVRVTIS    N+TK+ DF+VQN++ E     SLKMEVGIE+CLHIEFEYDK  YH+QDVVIGKIYFLLVRIKIKHME+AIIRRETAG G NQYNESET++KYEVMDGAPAKGEC+PLR+FLKPY LTPTY R  NKF+VKYFLNLVLVDEEDRRYFKQQEVTLWRKYV
Sbjct:    1 MQALFGFNPGVTILVEFDHIDKRPTKPSTPGDRRASEALPIFEGSEAVSGTATVLVAPGKKVDHLGIKAELIGQIELYYDRGNHYEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVRLRYFVRVTISTRGKNVTKEMDFVVQNIQQEPEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETIIKYEVMDGAPAKGECVPLRVFLKPYALTPTY-RGTNKFTVKYFLNLVLVDEEDRRYFKQQEVTLWRKYV 297
[Close]
BLAST of mRNA_S-ischiensis_contig84.20088.1 vs. uniprot
Match: A0A836CB39_9STRA (Vacuolar protein sorting-associated protein 26-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB39_9STRA)

HSP 1 Score: 461 bits (1185), Expect = 1.840e-154
Identity = 223/296 (75.34%), Postives = 253/296 (85.47%), Query Frame = 2 
Query:  299 FGFNQSATILVEFDHVDKRPTKPAMVADKKAPEPLPVFKGTEPVSGTVTVLVAPGKKVEHQGIKCEMIGQIEVYYDRGNHYEFSSLVRELDTSGILFGNRQFRFDFSAVEKPYETYSGLNVRLRYFVRVTISKPYGNITKDHDFIVQNVEPEXXXX-PSLKMEVGIEECLHIEFEYDKGKYHVQDVVIGKIYFLLVRIKIKHMELAIIRRETAGQGPNQYNESETLVKYEVMDGAPAKGECIPLRIFLKPYGLTPTYTRVNNKFSVKYFLNLVLVDEEDRRYFKQQEVTLWRKYVG 1183
            FG    AT+L+EFD  ++RP++     DKKA E +P+F G+EPVSG VTVLVAPGKKV+H GIK EMIGQIE+YYDRGNHY+FSSLVRELDT+  L GNRQF FDFS V+KPYE+YSGLNVRLRYFVRVTI++ YG ITKD +F VQNVEPE     PSLKMEVGIEECLHIEFEYDK KYH++DV+IGKIYFLLVRIKIKHMELA++RRE AG G   YNESET+VKYEVMDGAP KGEC+PLR+FLKPY LTPTY  +NNKFSV+Y+LNLVLVDEEDRRYFKQQEV LWR+ VG
Sbjct:    4 FGLQPGATVLLEFDGAERRPSRAPPPGDKKALERVPIFVGSEPVSGAVTVLVAPGKKVDHMGIKVEMIGQIELYYDRGNHYKFSSLVRELDTANSLVGNRQFLFDFSNVDKPYESYSGLNVRLRYFVRVTITRNYGTITKDFEFAVQNVEPEEPVMNPSLKMEVGIEECLHIEFEYDKSKYHLRDVIIGKIYFLLVRIKIKHMELAVVRREAAGSGATVYNESETVVKYEVMDGAPVKGECVPLRLFLKPYDLTPTYKSINNKFSVRYYLNLVLVDEEDRRYFKQQEVVLWRRDVG 299
[Close]
BLAST of mRNA_S-ischiensis_contig84.20088.1 vs. uniprot
Match: A0A7S2UYV3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYV3_9STRA)

HSP 1 Score: 386 bits (992), Expect = 1.770e-125
Identity = 188/300 (62.67%), Postives = 236/300 (78.67%), Query Frame = 2 
Query:  293 SLFGFNQSATILVEFDHVDKRPTKPAMVADKKAPEPLPVFKGTEPVSGTVTVLVAPGKKVEHQGIKCEMIGQIEVYYDRGNHYEFSSLVRELDTSGILFG-NRQFRFDFSAVEKPYETYSGLNVRLRYFVRVTISKPYG-NITKDHDFIVQNVEPEXXXXPS-LKMEVGIEECLHIEFEYDKGKYHVQDVVIGKIYFLLVRIKIKHMELAIIRRETAGQGPNQYNESETLVKYEVMDGAPAKGECIPLRIFLKPYGLTPTYTRVNNKFSVKYFLNLVLVDEEDRRYFKQQEVTLWRKYVG 1183
            SLFGF  +A I ++F     R  K      +K  + L +F G E VSGTV V++ PGK++EHQGIK EMIGQIE++YDRGN Y+F+S+VREL+ +G++ G +R + FDFS V+KPYE+YSG+NVRLRYFVRVTI++ YG NI K+ +F+VQ    E     + LKMEVGIE+CLHIEFEYDK +YH+ DV++GK++FLLVRIKIKHME+AIIRRE  G G NQYNE+ETL K+E+MDGAP KGECIP+R+FL  Y LTPTY  VNN+FSV+Y+LNLVLVDEEDRRYFKQQEV  WR+ +G
Sbjct:    2 SLFGFGPAAEIRLDFADSATRTRKAVGAVGQKDSKQLLIFHGEEAVSGTVDVVLPPGKRLEHQGIKVEMIGQIEMFYDRGNSYDFTSIVRELEAAGVMEGGSRNYTFDFSTVDKPYESYSGINVRLRYFVRVTITRSYGSNIIKEEEFLVQTPSTEETAMTNTLKMEVGIEDCLHIEFEYDKNRYHLADVILGKVFFLLVRIKIKHMEVAIIRREACGTGSNQYNETETLTKFEIMDGAPVKGECIPVRLFLSQYNLTPTYRNVNNRFSVRYYLNLVLVDEEDRRYFKQQEVIFWRQELG 301
[Close]
BLAST of mRNA_S-ischiensis_contig84.20088.1 vs. uniprot
Match: A0A6S8R4Z0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8R4Z0_9STRA)

HSP 1 Score: 370 bits (950), Expect = 2.780e-119
Identity = 179/299 (59.87%), Postives = 232/299 (77.59%), Query Frame = 2 
Query:  287 MQSLFGFNQSAT-ILVEFDHVDKRPTKPAMVADKKAPE--PLPVFKGTEPVSGTVTVLVAPGKKVEHQGIKCEMIGQIEVYYDRGNHYEFSSLVRELDTSGILFGNRQFRFDFSAVEKPYETYSGLNVRLRYFVRVTISKPYGN-ITKDHDFIVQNVEPEXXXXPSLKMEVGIEECLHIEFEYDKGKYHVQDVVIGKIYFLLVRIKIKHMELAIIRRETAGQGPNQYNESETLVKYEVMDGAPAKGECIPLRIFLKPYGLTPTYTRVNNKFSVKYFLNLVLVDEEDRRYFKQQEVTLWR 1171
            M SL G+ +S   I V FD   +RP +      + +P   P PVF   EPV+G V + V  GK++EHQGIK E +GQIE+++DRG +Y+F+ ++RELD  G+L G +++ FD S  EKPYE+Y+GLNVRLRYFVRVT+++ Y + + K+ +FIVQ  +P       +KMEVGIEECLHIEFEYDK KYH+ DVV+GK+YFLLVRIKIKHMELA+IRRE AG GPNQ+NESET+ KYEVMDGAP +GEC+P+R+FL+ + LTPTY  +NNKFSV+Y+LNLVLVD+E+RRYFKQQE+TL+R
Sbjct:    1 MASLLGYGKSDDRISVTFDGDAQRPRR------RLSPNATPAPVFAAVEPVTGVVEIRVPAGKRLEHQGIKIECVGQIELFHDRGTYYDFTCVLRELDVPGVLMGQQRYAFDLSHAEKPYESYNGLNVRLRYFVRVTVTRGYASSLIKEQEFIVQVSQPAPETNTPVKMEVGIEECLHIEFEYDKSKYHLADVVVGKVYFLLVRIKIKHMELAVIRREAAGAGPNQHNESETITKYEVMDGAPVRGECVPIRLFLRNFNLTPTYRGINNKFSVRYYLNLVLVDQEERRYFKQQEITLYR 293
[Close]
BLAST of mRNA_S-ischiensis_contig84.20088.1 vs. uniprot
Match: A0A6A7GAN3_9CRUS (Membrane coat complex Retromer (Fragment) n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GAN3_9CRUS)

HSP 1 Score: 367 bits (942), Expect = 1.310e-117
Identity = 183/307 (59.61%), Postives = 229/307 (74.59%), Query Frame = 2 
Query:  293 SLFGFNQSATILVEFDHVD--KRPTKPAMVAD--KKAPEPLPVFKGTEPVSGTVTVLVAPGKKVEHQGIKCEMIGQIEVYYDRGNHYEFSSLVRELDTSGILFGNRQFRFDFSAVEKPYETYSGLNVRLRYFVRVTISKPYG-NITKDHDFIVQNVEPEXXXXPSLKMEVGIEECLHIEFEYDKGKYHVQDVVIGKIYFLLVRIKIKHMELAIIRRETAGQGPNQYNESETLVKYEVMDGAPAKGECIPLRIFLKPYGLTPTYTRVNNKFSVKYFLNLVLVDEEDRRYFKQQEVTLWRKYVG*LTPP 1198
            S  GF  +A I VEF + D  K+ T   +  +  KK  + + VF G E V G + +  +  K++EH GIK E+IGQ+E+ YDRGNHY F+SL+RELD  GIL   + F F+F+ VEK YETY+G+NVRLRYFVRV IS+ YG NI K+ DF VQNV P+     +LKMEVGIE+CLHIEFEYDK KYH+ DV++GKIYFLLVRIKIKHMEL I++RE+ G GPN YNE+E + K+E+MDGAP +GECIP+R+FL P+ LTPT+  V+NKFSVKY+LNLVLVDEE+RRYFKQQE  L RK +    PP
Sbjct:   17 SFLGFGSNAEIKVEFANEDASKQITVKTVHGESKKKRIQTMSVFSGNETVGGKIYIAPSGSKRLEHTGIKVELIGQVELAYDRGNHYVFTSLIRELDAPGILTAEKTFSFEFANVEKQYETYNGVNVRLRYFVRVKISRSYGSNIKKEIDFAVQNVRPDPEINNTLKMEVGIEDCLHIEFEYDKSKYHLDDVIVGKIYFLLVRIKIKHMELQILKRESTGNGPNLYNETEIMTKFEIMDGAPVRGECIPIRLFLSPFDLTPTFKNVHNKFSVKYYLNLVLVDEEERRYFKQQEFFLRRKAMKYSKPP 323
[Close]
BLAST of mRNA_S-ischiensis_contig84.20088.1 vs. uniprot
Match: A0A6P8J275_ACTTE (vacuolar protein sorting-associated protein 26B-like n=2 Tax=Actiniaria TaxID=6103 RepID=A0A6P8J275_ACTTE)

HSP 1 Score: 362 bits (930), Expect = 8.870e-116
Identity = 184/295 (62.37%), Postives = 219/295 (74.24%), Query Frame = 2 
Query:  293 SLFGFNQSATILVEFDHVDKRPTKPAMVADKKAPEPLPVFKGTEPVSGTVTV-LVAPGKKVEHQGIKCEMIGQIEVYYDRGNHYEFSSLVRELDTSGILFGNRQFRFDFSAVEKPYETYSGLNVRLRYFVRVTISKPYGNITKDHDFIVQNVEPEXXXXPSLKMEVGIEECLHIEFEYDKGKYHVQDVVIGKIYFLLVRIKIKHMELAIIRRETAGQGPNQYNESETLVKYEVMDGAPAKGECIPLRIFLKPYGLTPTYTRVNNKFSVKYFLNLVLVDEEDRRYFKQQEVTLWRK 1174
            S FGF QSA I +E D  DKR        D K  E L ++   E V+G V V L  PGKK+EHQGIK E IGQIE++YDRGNH+EF+SLVREL   G L  N  F F+F  VEKPYETY+G NVRLRYF+RV I +   +I+K+ D  V  +        S+KMEVGIE+CLHIEFEY+K KYH++D ++GKIYFLLVRIKIKHMELAII+RET G GPN YNE+ET+ KYE+MDGAP +GE IP+R+FL  Y LTPT+  VN KFSV+YFLNLVLVDEE+RRYFKQQE+ LWRK
Sbjct:    2 SFFGFGQSAEIEIELDGADKRKQVDVKNEDGKK-ERLYLYYDGESVTGKVKVNLKNPGKKLEHQGIKIEFIGQIELFYDRGNHHEFTSLVRELARPGELMQNETFDFEFVNVEKPYETYTGANVRLRYFLRVAIVRRLSDISKEMDLAVHTLSTYPEMNTSIKMEVGIEDCLHIEFEYNKSKYHLKDAIVGKIYFLLVRIKIKHMELAIIKRETTGTGPNTYNENETIAKYEIMDGAPVRGESIPIRLFLAGYELTPTFKDVNKKFSVRYFLNLVLVDEEERRYFKQQEIILWRK 295
[Close]
BLAST of mRNA_S-ischiensis_contig84.20088.1 vs. uniprot
Match: UPI00106D62E1 (vacuolar protein sorting-associated protein 26B-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D62E1)

HSP 1 Score: 362 bits (930), Expect = 1.580e-115
Identity = 178/301 (59.14%), Postives = 227/301 (75.42%), Query Frame = 2 
Query:  278 AGAMQSLFGFNQSATILVEFDHVDKRPTKPAMVADKKA-PEPLPVFKGTEPVSGTVTV-LVAPGKKVEHQGIKCEMIGQIEVYYDRGNHYEFSSLVRELDTSGILFGNRQFRFDFSAVEKPYETYSGLNVRLRYFVRVTISKPYGNITKDHDFIVQNVEPEXXXXPSLKMEVGIEECLHIEFEYDKGKYHVQDVVIGKIYFLLVRIKIKHMELAIIRRETAGQGPNQYNESETLVKYEVMDGAPAKGECIPLRIFLKPYGLTPTYTRVNNKFSVKYFLNLVLVDEEDRRYFKQQEVTLWRK 1174
            +G   SLFGF QS  I ++ +  D R  K   V +++   E L ++   E V G V V L  PGKK+EH GIK E++GQIE++YDRGNH+EF+SLV+EL   G++  N  F F+F  VEKPYETY+G NVRLRYF++VTIS+   ++TK+ +  V  +        S+KMEVGIE+CLHIEFEY+K KYH++DV++GKIYFLLVRIKIKHME+AII+RET G GPN YNESET+ KYE+MDGAP +GE IP+R+FL  Y LTPT+  VN KFSV+Y+LNLVL+DEE+RRYFKQQE+TLWRK
Sbjct:   26 SGVKMSLFGFGQSTDIFIDLEDSDSR--KQIEVRNEEGRKEKLLLYYDGETVKGKVKVNLKNPGKKLEHHGIKIELVGQIELFYDRGNHHEFTSLVKELHQPGVMTENSSFDFEFVNVEKPYETYTGTNVRLRYFLKVTISRRLSDMTKEMEIAVHTLSSYPEINTSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTGPNSYNESETIAKYEIMDGAPVRGESIPIRLFLAGYDLTPTFKDVNKKFSVRYYLNLVLIDEEERRYFKQQEITLWRK 324
[Close]
BLAST of mRNA_S-ischiensis_contig84.20088.1 vs. uniprot
Match: A0A2R6X8U2_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X8U2_MARPO)

HSP 1 Score: 360 bits (925), Expect = 1.590e-115
Identity = 178/297 (59.93%), Postives = 221/297 (74.41%), Query Frame = 2 
Query:  287 MQSLFG-FNQSATILVEFDHVDKRPTKPAMVADKKAPEPLPVFKGTEPVSGTVTVLVAPGKKVEHQGIKCEMIGQIEVYYDRGNHYEFSSLVRELDTSGILFGNRQFRFDFSAVEKPYETYSGLNVRLRYFVRVTISKPYG-NITKDHDFIVQNVEPEXXXXPSLKMEVGIEECLHIEFEYDKGKYHVQDVVIGKIYFLLVRIKIKHMELAIIRRETAGQGPNQYNESETLVKYEVMDGAPAKGECIPLRIFLKPYGLTPTYTRVNNKFSVKYFLNLVLVDEEDRRYFKQQEVTLWR 1171
            M  L G F    T+ VEF   + RP +  +  +     P+P+F+  E V G V +   PGKKVEH G+K E++GQIE+Y+DRG+ Y+F+SLVRELD  G +   + F F+FS VE PYE+Y+G+NVRLRY ++VTIS+ Y  NI +  DF V+N  P      S+KMEVGIE+CLHIEFEY K KYH++DV+IGKIYFLLVRIKIKHMEL I RRE+ G GPN YNE+ETL KYE+MDGAP +GE IP+R+FL PY LTPTY  +NNKFSVKY+LNLVLVDEEDRRYFKQQE+T+ R
Sbjct:    1 MNFLIGAFKPPCTVSVEFKDAETRP-EANIKKENGQMAPVPLFQSQESVVGEVRIEPLPGKKVEHMGVKIELLGQIELYFDRGSFYDFTSLVRELDVPGEIVDRKTFPFEFSTVEMPYESYNGVNVRLRYILKVTISRSYATNIVEYKDFWVRNFSPPPEINNSIKMEVGIEDCLHIEFEYSKSKYHLKDVIIGKIYFLLVRIKIKHMELEIRRRESTGSGPNTYNETETLAKYEIMDGAPVRGESIPIRLFLSPYDLTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITMMR 296
[Close]
BLAST of mRNA_S-ischiensis_contig84.20088.1 vs. uniprot
Match: A9TQ87_PHYPA (Predicted protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A9TQ87_PHYPA)

HSP 1 Score: 358 bits (919), Expect = 1.240e-114
Identity = 178/298 (59.73%), Postives = 222/298 (74.50%), Query Frame = 2 
Query:  287 MQSLFG-FNQSATILVEFDHVDKRPTKPAMVADKKAPEPL-PVFKGTEPVSGTVTVLVAPGKKVEHQGIKCEMIGQIEVYYDRGNHYEFSSLVRELDTSGILFGNRQFRFDFSAVEKPYETYSGLNVRLRYFVRVTISKPYG-NITKDHDFIVQNVEPEXXXXPSLKMEVGIEECLHIEFEYDKGKYHVQDVVIGKIYFLLVRIKIKHMELAIIRRETAGQGPNQYNESETLVKYEVMDGAPAKGECIPLRIFLKPYGLTPTYTRVNNKFSVKYFLNLVLVDEEDRRYFKQQEVTLWR 1171
            M  L+G F    T+ ++F  VD    K A V  +     L P+F G + V G V +   PGKKVEH G+K E++GQIE+Y+DRGN Y+F+SLVRELD  G +   + + F+FS VE  YE+Y+G+NVRLRY ++VTIS+ Y  NI +  DF V+N  P+     S+KMEVGIE+CLHIEFEY K KYH++DV++GKIYFLLVRIKIKHMEL I RRE+ G GPN YNESETL KYE+MDGAP +GE IP+R+FL PY LTPTY  +NNKFSVKY+LNLVLVDEEDRRYFKQQE+T++R
Sbjct:    1 MNYLYGAFGSPCTVSIDF--VDAETRKQASVKKENGQTVLVPLFLGQDSVVGEVRIDPVPGKKVEHTGVKIELLGQIELYFDRGNFYDFTSLVRELDVPGEILERKTYPFEFSTVEMQYESYNGVNVRLRYILKVTISRSYATNIVEYKDFWVRNYSPQPEINNSIKMEVGIEDCLHIEFEYSKSKYHLKDVIVGKIYFLLVRIKIKHMELEIRRRESTGSGPNTYNESETLAKYEIMDGAPVRGESIPIRLFLSPYDLTPTYRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITMYR 296
[Close]
BLAST of mRNA_S-ischiensis_contig84.20088.1 vs. uniprot
Match: A0A7S2C2A7_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C2A7_9STRA)

HSP 1 Score: 358 bits (918), Expect = 1.940e-114
Identity = 181/303 (59.74%), Postives = 221/303 (72.94%), Query Frame = 2 
Query:  287 MQSLFGFNQSAT--ILVEFDHVDKRPTKPAMVADKKAPEPLPVFKGTEPVSGTVTVLVAPGKKVEHQGIKCEMIGQIEVYYDRGNHYEFSSLVRELDTSGILFGNRQFRFDFSAVEKPYETYSGLNVRLRYFVRVTISKPY-GNITKDHDFIVQNVEPEXXXXPSLKMEVGIEECLHIEFEYDKGKYHVQDVVIGKIYFLLVRIKIKHMELAIIRRETAGQ-GPNQYNESETLVKYEVMDGAPAKGECIPLRIFLKPYGLTPTYTRVNNKFSVKYFLNLVLVDEEDRRYFKQQEVTLWRKYVG 1183
            M SLF F   ++  I + FD    RPTK       +    LP+F   EP +G+V V V PGKK+EH GIK EM+GQ E++YDRGN+ EF   VREL  +G+L   +QF FDFS  EK +E+Y+GLNVRLRYF+RVTI++ Y  N  K+ DFIVQ V P       +KMEVGIEECLHIEFEYDK  YH++D++IGK++FLLVRIKIKHME+ IIRRE AG  G  QYNESETL K+EVMDGAP +GECIP+R+F+    +TPTY  +N KFSVKY+LNLVLVD+EDRRYFKQQEV +WR  VG
Sbjct:    1 MASLFSFGSKSSDRIAISFDGGANRPTKRTGTGPTEVV--LPIFDNKEPFTGSVEVRVDPGKKLEHMGIKIEMVGQTEMFYDRGNYSEFVQTVRELAPAGLLANTQQFSFDFSNKEKEFESYNGLNVRLRYFIRVTIARNYQSNYVKEQDFIVQIVSPPPDAVVPIKMEVGIEECLHIEFEYDKKFYHLKDIIIGKVFFLLVRIKIKHMEVNIIRREQAGSAGAQQYNESETLTKFEVMDGAPVRGECIPIRLFISSLEVTPTYKSINKKFSVKYYLNLVLVDQEDRRYFKQQEVIMWRNQVG 301
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS34_ECTSI2.050e-16478.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CB39_9STRA1.840e-15475.34Vacuolar protein sorting-associated protein 26-dom... [more]
A0A7S2UYV3_9STRA1.770e-12562.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6S8R4Z0_9STRA2.780e-11959.87Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6A7GAN3_9CRUS1.310e-11759.61Membrane coat complex Retromer (Fragment) n=2 Tax=... [more]
A0A6P8J275_ACTTE8.870e-11662.37vacuolar protein sorting-associated protein 26B-li... [more]
UPI00106D62E11.580e-11559.14vacuolar protein sorting-associated protein 26B-li... [more]
A0A2R6X8U2_MARPO1.590e-11559.93Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A9TQ87_PHYPA1.240e-11459.73Predicted protein n=3 Tax=Physcomitrium patens Tax... [more]
A0A7S2C2A7_9STRA1.940e-11459.74Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:623930..637658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score485.3
Seed ortholog evalue2e-134
Seed eggNOG ortholog2880.D8LS34
Preferred nameVPS26B
KEGG rclassRC00055,RC00523
KEGG koko:K01876,ko:K18466
KEGG ReactionR05577
KEGG Pathwayko00970,ko04144,map00970,map04144
KEGG ModuleM00359,M00360
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0002376,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005829,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0008104,GO:0008150,GO:0008565,GO:0009894,GO:0009966,GO:0009987,GO:0010008,GO:0010033,GO:0010506,GO:0010646,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016055,GO:0016192,GO:0016197,GO:0016241,GO:0016482,GO:0016787,GO:0019222,GO:0023051,GO:0023052,GO:0030111,GO:0030139,GO:0030904,GO:0030906,GO:0031090,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032507,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034097,GO:0034341,GO:0034613,GO:0042147,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045053,GO:0045087,GO:0045184,GO:0045185,GO:0045335,GO:0046907,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0051716,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071346,GO:0071702,GO:0071705,GO:0097422,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098852,GO:0098876,GO:0198738,GO:1905114,GO:1990126
EggNOG free text desc.retrograde transport, endosome to Golgi
EggNOG OGsKOG3063@1,KOG3063@2759
EC6.1.1.12
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionVacuolar protein sorting protein 26 related
Ec32 orthologEc-08_001990.1
Exons9
Model size2357
Cds size900
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817338.47408-UTR-S-ischiensis_contig84:623929..6251001622817338.47408-UTR-S-ischiensis_contig84:623929..625100Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 623930..625100 -
1695741038.9931452-UTR-S-ischiensis_contig84:623929..6251001695741038.9931452-UTR-S-ischiensis_contig84:623929..625100Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 623930..625100 -
1622817338.5982606-UTR-S-ischiensis_contig84:637372..6376581622817338.5982606-UTR-S-ischiensis_contig84:637372..637658Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 637373..637658 -
1695741039.1070576-UTR-S-ischiensis_contig84:637372..6376581695741039.1070576-UTR-S-ischiensis_contig84:637372..637658Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 637373..637658 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817338.485924-CDS-S-ischiensis_contig84:625100..6251491622817338.485924-CDS-S-ischiensis_contig84:625100..625149Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 625101..625149 -
1695741039.0049045-CDS-S-ischiensis_contig84:625100..6251491695741039.0049045-CDS-S-ischiensis_contig84:625100..625149Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 625101..625149 -
1622817338.4968266-CDS-S-ischiensis_contig84:626526..6266531622817338.4968266-CDS-S-ischiensis_contig84:626526..626653Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 626527..626653 -
1695741039.01399-CDS-S-ischiensis_contig84:626526..6266531695741039.01399-CDS-S-ischiensis_contig84:626526..626653Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 626527..626653 -
1622817338.5082855-CDS-S-ischiensis_contig84:627550..6276951622817338.5082855-CDS-S-ischiensis_contig84:627550..627695Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 627551..627695 -
1695741039.0238035-CDS-S-ischiensis_contig84:627550..6276951695741039.0238035-CDS-S-ischiensis_contig84:627550..627695Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 627551..627695 -
1622817338.5190842-CDS-S-ischiensis_contig84:629513..6296271622817338.5190842-CDS-S-ischiensis_contig84:629513..629627Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 629514..629627 -
1695741039.035551-CDS-S-ischiensis_contig84:629513..6296271695741039.035551-CDS-S-ischiensis_contig84:629513..629627Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 629514..629627 -
1622817338.532873-CDS-S-ischiensis_contig84:630675..6308281622817338.532873-CDS-S-ischiensis_contig84:630675..630828Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 630676..630828 -
1695741039.0486934-CDS-S-ischiensis_contig84:630675..6308281695741039.0486934-CDS-S-ischiensis_contig84:630675..630828Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 630676..630828 -
1622817338.546188-CDS-S-ischiensis_contig84:632240..6323261622817338.546188-CDS-S-ischiensis_contig84:632240..632326Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 632241..632326 -
1695741039.0612392-CDS-S-ischiensis_contig84:632240..6323261695741039.0612392-CDS-S-ischiensis_contig84:632240..632326Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 632241..632326 -
1622817338.5619464-CDS-S-ischiensis_contig84:634011..6340991622817338.5619464-CDS-S-ischiensis_contig84:634011..634099Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 634012..634099 -
1695741039.0737014-CDS-S-ischiensis_contig84:634011..6340991695741039.0737014-CDS-S-ischiensis_contig84:634011..634099Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 634012..634099 -
1622817338.5755477-CDS-S-ischiensis_contig84:636256..6363911622817338.5755477-CDS-S-ischiensis_contig84:636256..636391Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 636257..636391 -
1695741039.0844438-CDS-S-ischiensis_contig84:636256..6363911695741039.0844438-CDS-S-ischiensis_contig84:636256..636391Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 636257..636391 -
1622817338.5866845-CDS-S-ischiensis_contig84:637369..6373721622817338.5866845-CDS-S-ischiensis_contig84:637369..637372Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 637370..637372 -
1695741039.097534-CDS-S-ischiensis_contig84:637369..6373721695741039.097534-CDS-S-ischiensis_contig84:637369..637372Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 637370..637372 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20088.1prot_S-ischiensis_contig84.20088.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 625101..637372 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20088.1

>prot_S-ischiensis_contig84.20088.1 ID=prot_S-ischiensis_contig84.20088.1|Name=mRNA_S-ischiensis_contig84.20088.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=300bp
MQSLFGFNQSATILVEFDHVDKRPTKPAMVADKKAPEPLPVFKGTEPVSG
TVTVLVAPGKKVEHQGIKCEMIGQIEVYYDRGNHYEFSSLVRELDTSGIL
FGNRQFRFDFSAVEKPYETYSGLNVRLRYFVRVTISKPYGNITKDHDFIV
QNVEPEPEPTPSLKMEVGIEECLHIEFEYDKGKYHVQDVVIGKIYFLLVR
IKIKHMELAIIRRETAGQGPNQYNESETLVKYEVMDGAPAKGECIPLRIF
LKPYGLTPTYTRVNNKFSVKYFLNLVLVDEEDRRYFKQQEVTLWRKYVG*
back to top

mRNA from alignment at S-ischiensis_contig84:623930..637658-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20088.1 ID=mRNA_S-ischiensis_contig84.20088.1|Name=mRNA_S-ischiensis_contig84.20088.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=13729bp|location=Sequence derived from alignment at S-ischiensis_contig84:623930..637658- (Schizocladia ischiensis KU_0333)
GTGCACTGGACGCGCATCAGGACAGCAGGCAGAAGAAGCTTGGACGGGCT
GTGTGCTAGCCCCTCCCAGGGCTTCGTTCGGCGATCTCCGTGCAACCACC
TGGGCTGCGAGTAGATTTCTTGCAACACTGTCCAGCTGAAGACCACCAGT
GTCGAGGCAGCGGGACACAACCCCGTGAGCCCAACTCCCACAGGGTACGG
AGAGTTAGCCACTGGCACACCGGAGGAGAGGAGTTCCATATTGGCGGCAG
GGGGGGGCACGGGGGGGGCGCTGGCGTGCCGGTGCCATGGTGAGCAAGTA
ACAGGGTGCTTGCAAGTGTTAACTTTGGAGTGCACACCCTGTGGGTGCTG
TGCACCAATGTGGTATTGGTATAGCATGCGTCAGAGCCATTGGGCTCGAG
TTTGACCCTGACCCAAGTTTGATCAGGCAACTGAAGCGCCGGGTTCAGTC
TGTCCTCAGCAAATCTCAGCTTATTTGCACAGACTATGTGCAGTACCTCC
CTCCAATGGCGCCAAAGCTCGGGATACGGAGCCCAATCTTGTGTCCGGCG
AGAGGCACGGTGCGTGCGTGCGTGCGTGCGAGAGTGAGGGTGTGCGTGCG
CACATGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGGGTGTTGTGGAG
ATGTGTGTGCGTGTGTCACTCAGAAGAGCCGCCGCATTCCTCTGCCCTCG
TGCACAGAAAATAATGCCTCTCGCCCATAATGCCTCTCGCCCTTGGCCAC
TGCCCCACCCGGTGCAGCAATCCCTGTTCGGATTCAACCAAAGCGCCACC
ATCCTGGTCGAATTTGACCATGTGGACAAGAGACCCACCAAGCCCGCCAT
GGTCGCGGACAAGAAGGCGCCTGAACCCTTGCCCGTTTTCAAGGGAACCG
AGGTGAGCTCTTATTTTTCTCCTTTTTGGGGGGCTTGCCTGACCGAGATC
GCCATGGTCAAGGGACAAGAAGGCGCCCGAGCCCTTGCCCGTTTTCAAGG
GAACTGAGGTGAGCTCTCAACCCTTTTACCCCTGAGGTCCGTATAGTCAT
AGGGTTTTAGTGTGTAAGTCCAATTTAGCAGGGGTAAAAGGGTCAAGTAT
TTTTTTCCTTTTTTTCTTTTGGCTTGCCTGACCGGAGCTCCACAGCATCC
CACCCGGCGGCAAATGGTTAGAGAAGGGGATGCGTGTGCTGCTGCCACGC
TGAGGAGGGCCACCACGCCCCCCTTTGCCCTTTGCCTATAGATGCCCTTG
CTGGCAAAAACGCCTCCACCCCTCGGCAATGACCACCGTGGGTGCAACCT
TTAGGGTGTGTGATGCGGTTGGCGCAGCGGCCAAACCTACTTTTTAGTTT
TTACTTCATGTCCTTGTACGTGTCATTTTTCTGCACACCGCTGCAGGACA
GCACTGCAGGTAGGCTTGTCAACTGGCGCCGGTATTGCGGCCGAGTGCCG
GCTGGCCCGCCAGAACCGATGCCCGGCCGTCGGGGCGACCGGTTTCCCAT
TTTTTTGTGAGTTGCGTACATTCCACATGCGTGTAGGTACTTACCACTGT
AGGCCGGCACCAAGCAAGATAGCTACTGTACAGTGCTGCTCCGTCTCGCC
CGAGGCGCGGGGTCAGTGGTCTCGGGACTACGGCAAGCACCACGTGAGTA
CATACATACAGTAGGGAGAGGATGACTACTTACTATTCTGTACTGTTGTC
TGTTGATGTGCCATCATTGCTCCTTGCCTGGGCTGCCGCAGCGTACAGTA
GGGAGAGAATGACTACTGCACTATTCCGTTGTCTGTTGATACTTCGAAGC
ATGTCCTCATTGCTCCTTGCCTGGGCTGCGGCAGCAGCTGCTCGCTGTTG
CTGCCCGTCGGTCGGTCGCCCAGCCCTTTGTCTCTACTTGTAGGAGTACA
CCTACACGCCTGCATGCCTGCATGGATGGGCGGATGGTTGTTCCTCCTGG
GAAAGAATCAGCTTCTATTGATATTCACATCCAAGTCTAGTAGAGTGCCA
CAGCATAATTATGATCAATGGTCTCGGGACTATCCTATGGTAAGCGCAGT
GTGATTCGTGCATACCGTGGATGCTACCGTGGGCCAGTAGTTGTACTCGT
ACTACAGTAGTTCAATCGCTTGCTCGCGCTACAGTACTTCGAAGTTCAGT
AGTACTGTGCGAGTAGCGCTCAGAGAAAATGTGTATAGTGCGAGGGTTCG
GAGGGGAACTACTATTGTAACAGTACTACGTGAGCGATTTCCTGGCCCGA
CCCAATTTCTTTTGCAAGAAGACGAACAAGCGAGCGGGAAAGAAGAGGTG
TCCCTACTTGCGCGAGTTCAGGGCCCCACCCGCAGAAGCCCTTCCTTTCA
CTCGCACCCGACTCGATTTCCTGCACCTTACCCGAAACTGGAACCTATCC
GGAGGAGTTAGCCCTCCTACCCCTGCTAAATTGGACTTGCACACTAAAAC
CCTATGATTGTACGGACCCCAGGGGTAAAAGGGCTAGCACTCCTGCCGCT
CGCAGGGCAGAAAAGCCACGGGCAAAGGGGCGGGGCAGGGGGCGTGGCCT
CTTGTGCCACGCAGCGGGACAAACCCGCGTGAAGTAGTGATGGAATACGT
ATCGATCAGTAGGTAGCTATTGGGCTCGACTGATTTGTGGATGGCGTTGC
TAGCTACGGGTACTTGGATTTAGTGTGGGTCAAACTATCGAATATCGACT
ATCGATATAGTTTGAAGCATATATATAGATCAGTGCTGTCGACACATAGG
TTGGTTTGCTAGGATATTCCAACACTGGCGTGAAGATGCACACGTTGGAG
TAGCGCAAGAAGAAGAAGAAGCTGCGAGCAGAGAGTAAGTGTCATCCGAC
GATGGGATGATAGACTCAGCGCCCAGACTTGTCAGCTCTTTTTTGGAATA
CCCAAGCAAATCCACCTATTTATCGACAGCAATGATCCTACCGTATGTAT
CTATCGATCGTCGATATTCGATAGTTTGGCCCACACTAAATTCAAGCACT
GAACCAGTTCTGTTGTTTTTTCTTCCCCCCCTTCTTCCTTGTGTGCGCCT
CGCTCCCAGCCCGTGAGCGGGACGGTGACGGTGCTGGTGGCGCCCGGGAA
GAAGGTGGAGCACCAGGGGATCAAGTGCGAGATGATCGGGCAGATCGGTG
AGTACAGGACAAGTACAACTGCCAGTACACCCAATTCTTAAATGGGATTG
CCACCAGTATGAGAACGCTCAATCTCACACACGTGCGATTGTACCTCGTT
GCAATTTATGATTTGTGCCCACGAAGTATGAATTACCAGCACGGTGATGA
TTTTACACCGCGCTTACCCAAACACTGGGAAGGTGGAGGGGAAGGGCTTC
TGGTGAGGTTCCCCACCTTCGGGTTTTGGGACGGGGACCGGCACCGGCAT
GCCATCACAATAGTTGAAGAAAAGGTGGAGGAGCACCAGGGGTGATTCGT
ATTTATTTTCATGAGTTGCGATCACACGTGTGTCAGATTGAGTGTTCTCG
TGCTAGCGGTTATCCCATTTAAGGATTGAGTGTGCGTATAATAGTGACTA
TCACATCAAAGAATTAAAAGACAAAGAAGGGGGGGATCAAGTGCGAGACG
ATCAGGCAGCCGTGCAAAAACCCCTACTGTACTGCACAGCAGCGGGTTGC
TCCTGTAGCCCGAACCTTAGCCCTTCTGTCCCAGGCATGAGCTATTGTTA
AGGACAGGGAGCTATAGGGATTTAGTGTGCGTGTACACCCGCCCCCCCGG
GGGAGGTCAAAGGGTTGAGAGCCCTCACACCAAACAGAGGCGAAGAAATC
GAATCCTTCTGCCACAGTTGCACACGGAACTATAGAGATTTGGTGTGCGT
GTCCACCCTTCCGGGGGTCAAAGAGGTAAACTCTAGCCCTAGACCTATAG
CCCAACAGCGGGCGAGGGGAGCACGAGGGGATCAGGTGCGAGAGAATCGG
GCAGAAGATATGTGAAGACGGTAGCTGTACAGTATGAGTAGCGGATTATA
CCCCGAGTCGGATCCCTCAACCCCCTTACCCCTGGAGTCCACATAGTCAT
CGGGTTTTAGTAGTGTGTAAGTTTAGCGGGGCTAAAAGGGTCGAAGCCCT
AGCCCTGCAGAAGGTGGAGGAGCGCCAGGGGATGGAGTGCGAGATGATGG
AGCAGATATCTGTGCACGAGTGCCAGTATATGCTTCGAAGTATATGTGTA
CTCACGTTGTGCTTGCCATAGTCCCGAGACCGTTAGCCAACACGCGTGTG
TTTGCGCCCTGGACCCGAACGATCCTCGTCTTTGTTCCTACAACTACGAT
ACGGATACAAGTACACTGGAGACGCGGGTTGACCCTAACCTTAACGCCAA
GTAGGTGGAGGAACACGGTGCGAGACGATGGAGCAGATCGCTGGGCACGA
GCAACAGTGCAACTGTAGATGTGGGTTCACCCTAAGCTTAGCGCCAGGCA
GGTGGAGGAGGAGGGGCACGGGGGGATCAAGTGTGGGACGATCGGGCAGA
TAGCTGGGCACGAGTACCAGCTACTGCAGTACCCCACCTCACCAGCGACA
TTTCAACGAAGTACTGTGTACTATACACGTATGCGGTCGCTCTACCTTGC
CAGTTCACAGCTCTACCTACAGGTAGTATGCACGAGGGAAGCGTTGCTCT
ACCGTACGAGTTCCAGCTTTGCCTGCTCTGTCCCGATCGAGGCGCGTGGT
CAATGGTCTCGGGACTACGGCAAGCACAACGTGAGTACATGTAAATATAG
ACTGCGAAGTATGTATGTGTGAGTTCCCAGCTCTGCCCATTGACCCTGAA
CTGTGACCCCCAATTCCGCCCGGCACACACAGAGGTGTACTACGACCGAG
GGAACCACTACGAATTCTCCTCTTTGGTGCGGGAGCTGGACACGTCTGGC
ATTCTGTTTGGAAATCGGGTGAGCAGAATCCCAGTGATGGAATATCTGCT
GTCAGCAAATCAACCTATTTATCGACAGTACTGGTCTATTTAGAGTAGTA
GATAAGCAGCGAGTTCCAGGCCCCGTGCCGCTCGTCCCGAAACGGGACTC
AACGAAGCCCTTCTTCCCCTCGCAGAGCAAGAAGAAACCAAAAATAAAGA
AGGATAGGGGCGGGGTGATGAGGAAAGGGAAGAGGCGCAGGGAAATCTCT
TGTGCACATCTATCGATGGTCGATAGTTGATAGTTTGACCCACACTAAAT
CCAAATAGTTTTTGGCATGAAGATAAAAAGCGAGTGGAAAAGAAGAGGTG
TTCCTACTTACGCGAGGTCAGGGCCCCCATCCCCGGAAGCCCAAGTAGTT
AGTAGCGCCACCCACAAAATCAGTCGAGCCCGATAGCTATCTACTGATCA
ATATTCCATCACTGCAGAATCACCCCCCCCTGTCACCCCTGTGGGGAGGC
GTGGTCAATGGCCATGCGGCTCCGGCAGGCAACTCCATGAGAAGGCCTGA
GGGCCTGTGCTGACAATGGCAGAAATAGCAGAAATACCTGACAGGTGTAA
TGAGGAGAGCTAGAGATATCTCCTACTGTAGACTGAGAGGGCTACAAGGG
GGCTGTAGAGAGTCTTGTATAGGGGACAAGAGGCCATGTGTGTCGTTTTA
ACATCATGGATACAGGTGTTCTGACAAAGAGTACACTCGCCCCCCCGCCC
TCCCCCTGGCCCATCTCTCCTGGGGCCCGTGGCTCATATGGTTTTGTCCC
TCACGGGGCGTGGTGTAGAGTAAGAAGTGATAGTACCGCTGCGTGCTTTT
TTGCATGAAGATACCCAAGCGAGTGGGAAAGAAGAGGTGTTCCTACTTAC
GCGAGTTCAGGGCCCCACCCCCGGAAGCCCTTCCTGCGTGCTTTGCGAAC
TGGATGCGCGCTGTGCCCGTTGCGACACGCTCGATGCGGTGCTGTGGTGG
TGTGATGTGTGACGTCGGGCGACAATGCTTTCGCTCGCCAATGCTTGCAA
CGCCCGTCATCACATAGCACATAGTAATATCTCATCACTCGCCGGACGTA
CGATAGATGGACTCCTAAACCGTTCAGGGGGGTGCTTGTGCTCCCCCGCT
TGTTGTTGCTAGTGCGTCGTGACGCGATTGATTTGATGTGGTACGATGTG
CACAGCAAGTGAGATACAGTACTGTATACTTCTCCACCTCGGTCGAGGTG
TGTGGCCCATGGTCTCGGGACTACGGCAAGCACTGTTGGGTGTGTGTACG
TACGAGTATACAAGCGCTCGAGGTACTTCGTGCATGCTTGCCTATCTCAC
GGCCCTGCAATGTTCCGCCCCGAACCATCTTAGCTTACCCCCAGCCCCCT
GCTGCCCCCCCCCCCCTCTCTCGCGCACAGCAATTCCGGTTCGATTTCAG
CGCGGTGGAGAAGCCATACGAGACGTACAGCGGCCTCAACGTGCGCCTAC
GCTACTTTGTGCGGGTAACCATATCCAAGCCGTACGGGAACATCACCAAG
GACCATGATTTCATCGTGCAGAACGTTGAGCCGGTGCGTGCGCTCCCCCC
CGCCCCCCTGCTAATATACGAACACGCAATCCTTAAATGGGATAACCACT
ACTGCAATACGAGAAAACTCAATCTAACACACGTGCGATTGCGCCTCATT
GCAATTTATATGAATCACCCCCACCCCCCTGCCCTTGTCGGCAGATGGAT
GAATGCTCATGCCGCCATTTCTCGTGCCGCCATTGCGTTGATTCCTATAA
ATTGTAACCCACCTTAGGTTGTTGGGACGGAGCCCAGAACTCACATGTCA
ATACGTAGTTCAGTAAATTGTAACGAGGTACAATCGCACGTGTGTGAGAT
TGAGTGTTCCCGTATTAGTGGTTGTCCCGTGTAAGAATTGGTGTTCTCGT
ATTTATAATTAGCACGTTGTGTCGTGCACAAAGTTGAGGCGGTGCGCTTA
TCAGTAGGGAGATGGATCCCGCCGCTTTTTTCCAGCCCCCGTGCCCTCCC
TGGACTCTCGCTCGTGTTGCACGGGGGCCCCTGCTGTGGCAGTGCGTGGA
GATCTTTGAACAAACTTTCGGAATTATGTGCAGTACTGCAGTAGTAATAC
TTCGAAGTACAGTACAGTACGTTATGGCACAGTACAGTACAATACCGACA
GTACTGTGCAGTGCTGCAGCAACAAGCTTCACACAGTTGGGGGCTTGAAA
GTAGAAGTCCTTCGAGATGCATGTACTAGTGGTGTACTCGTACGCGCTCG
GTGTACTCATAAGCTCGCCGACAAACGGCGGAACACGCAATGTCCCGCGC
CATGGTCCCCGCCTCGCTCGTGTGCGTTCTCGGATACTTTTGAAGTACTT
GCAAGCAATGGAGCACTGTATGGCGTGCGAGTGCAGACACCCGTTCACAC
ACCTTGCAATGTACGGTGTGTGCATCCCGTGTACTGCTTGTGTGCATACT
CGTAATAGTACCACTATTGTACTTTGAGGATGTTCGCGCGCTTCCCAAGC
AGTCGCATGAGGAGACTCCTTGGAACTACATTGTCGCGTTGTACGAGTGA
CTGTGTTTTTCCTTGTTTATTCGGCCCGCAGGAACCCGAACCAACGCCCA
GCTTGAAGATGGAAGTGGGGATCGAGGAGTGCCTGCACATCGAGTTCGAG
TACGACAAGGGGAAATACCACGTGCAAGACGTCGTGATCGGGAAGGTGAG
GCTCTCTCGATGTGATGTCATGTCACGTCGACTACGTGCAGCACTTTAGG
GTGCACCTCACATCACCGCCACCTGTTGCATCGCATCGGCCGATGTGATG
TGATGTGATGTTCTGTGACGTGGTGTGATATCATTCCACCGAAAGTACAC
TAGAGTACATGGAGTGCCCGCCATGAGTTCGAGTACGGGAAGGGAAAATA
CCACCTGCAAGACGTCGTGATTGGGAACGGGAGGCTCCGTGTGATGTGAT
GTCATGTTGAACTACTTAGGTTTCGGCTCTTCTGCCTGGCTATACTTGGA
AGTAATGGCAATGCCGTTGCCTGCCCCCCCGGCTCTACCCCCACCCTGCC
CTGCGTAGCCCTCCCCATGATATCCCAACATCTCAGCTTCCTGCCGGTGC
GCAAGATTGAAACAAGGACTTCTCACCCTTGGCTCCCTCCCCGTTCCCTC
CCACCCCCCAAACCTCTGCCCCGCCCCGCCCCTCTGCGTGCAAACCCAAG
ATCTACCTCCTGCCGGTGCACAAGATTGAAACGGCTGCCCACCCTTGGCT
CCCTCCCCGCTCCCTCCCCCCCCAAAACCTCTGGCCCGCCCCGCCCCGCC
CCGCCTGCCCCTCTGCGTGAATCAGTGATGGAGCATCAAAGCCAATCAAC
CTATTTATCGACAGTACTGATCTATTTTGAGTGGTAGATGAGCGGCGAGT
TCCAGGCCCCGTGCCAAAAGGCTCGTCCCAAAACAGGACTCAACGAAGCC
CTTCTTCCCCTCGCAGAACAAAAAGAAAACAAAAAATAAAGAAGGAAAGG
GGCGGGGTGATGAGGAAAGGGAAGAGGGGCAGGGAAGTCTCTTGTGCTCA
CAGTGGGGCATGCGGGTGGGGCATGCGGGGACGCGCCGCACACGAACACC
GAGATCACGACGTACCTGGGCGAGTGCGAGTAGAGAAGGCATGAGCAAGT
GACGCAATGTGTACCGCGCACGATCCTCGATGACACCACGAGAGCCAACC
CAATAGCACAAAGCAAACGTCACAATGGTGTTGCCAGCACCAGAAGGACG
CATACCCAACACCCGTGGCTACGCGATGTGGTCACGCGGTCGTGTGCAAA
GCGGCACGAGCCCACGGGAGAGCTGGGGAGGGCCGGTCCAAAGAAACGCC
TTCCAAGAGAGTAGAACAGGCAGGAGACCCGACACGGCCCGGAAACCTGG
GGACGAGAAAAAGACGGGGCATACAAATGCTCCCCCATGCCAACTGATCC
TCATAGCGAGGTAATTCAGCGGACGGGAGCTACAATACTGCAGTGGAATA
TCTGCCGATAGTCGATATTCGATAGTTTGACCCACCAAGTAGTTCTTGGC
ATGAAGATAAAAAGTGAGTGGAACAGAAGAGGTGTTCCTACTTACGCGAG
GTCAGGGCCCCCATCCCCGGAAGCCCATCTTGTCACTCGCCTTCACTCGC
AGGGTATACAGAGCAAAAAAACAAAGAAAACCAAAGAGGAAGAGGGCGGG
CACAAATACAGGGGAGGAGGGGTCTCTTGTGCCACGAACGGGACATGCAG
AGGCAGCGCCGATGACGGCACGCGTGGCGTACCTGAGAGTGCACGAACGA
AGAACGTGTGAGAAAGGGAGCTTCCGCAGTTACCGCGTACACGTGGGGTC
ACGAAAACACAGAACCTATGCCAACCGCACGATGGTGTGGCCAACACCAG
AAAGGAAGACGAATGACCAGGTAGTTAGTAACGCCACCCACAAAATCAGT
CGAGCCCGATAACTGTCTGCTCACACTGATCGATATTCTATCACTGCTGA
GTGCACACCCCAGATCTATTTCCTGCTGGTGCGCATCAAGATCAAGCACA
TGGAGCTAGCCATCATCCGGCGGGAGACGGCGGGCCAGGGGCCCAACCAG
TACAATGAGAGCGAGACCCTCGTCAAGTACGAGGTCATGGACGGGGCGCC
CGCCAAGGGTGAGGAGCTACTGTGCGAGTACATTATACTTCGAAGCATAC
ACGCGCTTCGAACTATATGTACTCACGTTGTGCTTGCCGTAGTCCCGAGA
CCATTTGACCACGCGCCTCGGCCGAGACGAGTACTTGCATAGCTCCCGCC
TGGGCTGTAGGGGACACACCGAGGCACACGTACACACTGTGAAGTACTTT
GACATTGTCCTATCCGCCCCCCCCCTCCGTTCCGTCACTCCTTCTCCTCC
CTCTTTGCCATGCACTTCTCCTCCCACTCTGCCCTGCCCTTTCCCTTCCT
CTTCCATCTCCCTCTCCCTGTCCTCCCTCTTCATCCCCCCACCTCTCCCT
CTCCTCCCTTTCCCCCCCCCCCCCTCCCCCCCCCCCCTCCCCCGCGCGCG
CTTGCACCCCCTGCCCTTCTTCTTCCCCCTGGCCCAGCCGCCTCCCTCTC
CCCCTCTTCCTCTTCCAGTGCCTCTTCTTCCTCTTGCTTCGATGCGCTGC
ATGAAAATTAGTGCTGTCAGAACATCGGTATCCGTGATGTTAAAAATGAC
ACACATGGCCTCTAGCTCCTCTCATTACCCCTGAGGTATTTCTGCCATAG
TCAGCACAGGCCCCCAGGCCTCACTGCCCTCTCTAACGGCGCCAATCCAA
CAAGGTCCACAGCGCTTTACCGTGAGACGAGGTACTTCGACAAAGTGCGT
GGTTCCTCGTTTGGCTCACGTGAGTGCTCACGGCACTGAGACCCACCCCC
CACCAGGGTTGGCACTTAACCCCTAAATGGTGCACTTTTAGGCCCTTATT
TGGAGGGGCAGTAATTAGGGGCAATTAGACCTAACATGAAGGCCAATTAG
GCCGCTAAGTGCCAACCTTGCCCCCCGCCGTCGTGGCTTCCCTTGTCCCA
CACAGGCGAGTGCATCCCCTTGCGAATCTTCCTCAAGCCGTACGGGCTGA
CGCCCACGTACACGCGCGTTAACAACAAGTTCAGCGTCAAGTACTTCCTC
AACCTCGTATTGGTGGACGAGGAAGACCGCAGGTATTCACTTGGAAGTAC
ATAGTGCCCTGCAGCACTATAGTACATATGCCCTTCCATAGTAAGTACGG
ACAATACCTACGCGTCAAGTATGGACGAGGAAGACCGCAGGCACTCCTCT
TGCGGGCGGCAGCACCGTCGTTACCCCTCGCTCAACCGGTTCGGTCGCTG
CTCAAGATGATATCGTCCATGCGATGTGATATGATGTGATGTGATGTGAT
GTGGATTTGCGCGGCGGACACTTCATGTACATTGGGAATCGTCGCCTACT
GTGCTTGTTAGCTGGGCACATACGGTACCAAGTAGGCAGTGCACTCCGGA
ATGTACTCGTACTTTCTAAGCTTGCATGAGTACGCCTGCATCTGTGCTCT
TGGACGCACAGGTACTGTAGATGTACTTCGAAGTAACTGCGAAGCAATGC
ACTCGGGTACAGCACGCCCCTGCACAGCCTGATGTAGGTACTCTGCAGAC
GTTGCAGCGCTTCGTGTCTTGACTCGGAGAAGAACTGTTGCTCGAGTAGG
CGAGCGGCGCGCTTGGAAAGTATTTCCACTCGCCCCCGTGGTGCTTGAAA
AGGTACGAAGTATACTGTACTTTATGCTGCTTGTCCCGGTTGTGAAGCAC
TGATTGCCTGCATACATGCTATGCTGTGCTGCTGTATACTTCGAAGTACG
TAGAAGCATCCCTTCGACCCCGTCGGAAGTGTCGATGCCGGTGAGTAGCA
TGCAGTACGTGATGATCGCTGAACTGACAATTGTTGGTTGATCGATGTGT
TCAGGGTTTTGACCTACAGTGGGGCTTCCCCCACTGCCCGTTTCCCCCTT
TCCCGTTGGTTTTCTTTTTCTGTTTGCCCTGCGAGTGAAGGCAGGCTACG
GGTGGGCTTCCGCGCTGGGGCCCGGAACCCGCACAAGCAGGGTCATCTCT
ATTTCCCAACTCGCTTTCCCCCCCACACACAATGGAGCGGTCGGCTAAGC
GCACAAGGTTATGTCGTGTGGGACAAGCCAATGAGTACACGCATGTGGTC
AGCTCCAACTTCAACCAATCACGGCTTGTTTGACTGAACACGGCGACATG
CCGAAAATTGTTTCGGCATCGGACTGGCTGCGAACTACAGTACGGCTTTT
AAGACCGGCGGCACAACTATTTACAGCGTTTTAAACAGGGCCCTATTCGC
GGCCGACAATGCCGGCTCGCTATGCACAAAACACAGACCGGCGAAAACGA
TGCGAAAATGACCAAGCGGCGAAACTACGGTATTTTAGACCGACCTCGAC
CGACGGAAAAAAACAACGGTGTTTTAATACGCCCCCCCCCGGGCAAATCA
CCAACCCCACCCCATATGATGTATGGACCGACGGTGACCTTGTTTCTGAC
ACGCGACAGGTACTTCAAGCAGCAAGAGGTGACCCTGTGGAGAAAGTACG
TGGGATGACTCACTCCTCCACTCCCGGCCAAGTAGACCCAGCAGCACACA
CCAGGCGAAGGGGGCCAAGCGTCCGCTACAATAGCTCCTGGATGGAGACA
CAGAGAACGTTTTGCCAGCGCCTGCAGCGATGGACTTGGGCACCTTTTTT
CTGCAGGAAAGGTTTCAACATCCTTTCACGGCCGGGAGGCGTGTCGCCGC
GAGGCGAACAGGCGTAGAGCAGCAATATAGAAGGCGAGGCTCAGTTGGTG
CATGCCTTGTCTCGCGGCTGTGGCGAGCTTAATATAACAGCTGCGAGATT
TGATGTAGCACGAGGCGTATCAGGGGGTCCATTTGTCCACGGCTCTTTCG
TCTCGCGCCGGTCATGCTGTTGGACACCCACCCGGCATCGTTCTATGCGT
CGAGTGGGGGGGGCAAATCACCCCTTGGAGCAAGCAGTACGCTGCAGCTT
TATCTTGCACCGGGCACAGCCTGGCTGCAGCATCGCAAATCTTTCACCCC
CACCTTCCCCCCCGCCGCCGCGCCTGCTGGGCGGCGGACGCATCGTGGCC
TTGATCAGCACAGCTGCACAGCCCGATCGTCTCTCATCTCCTGCATGCTC
TCGACCGCGCCTTGTGAGGTTGGTGTCCGTCGTGGTGAGATCTCCGCTGG
ACCCAGGAGTGTCTCGCACCGGCCCAGGGCCTTGCCCTGCCCCAGCCAGG
GTTTGGCACTTGGGGGTTAATTAGGGCCTAGTTAGCCTTCATTTTAGGTG
TAGCTACCCCTAATTACCTCTAATTGAGGGTCTAAAAGGGCACCACTTAG
GGGTTAAGTGCCAACCCCGGCCCCAGCAACCGGTTAGAAGGGCTCCCGAC
TGGGACCGCAGCTTCCGGCCACACACCCAGCCCTGAAAGCACGTCCGGCG
CAGCGGCAGCGTCCGCCTTGAACGGGTCCCCGGTGCAGGCCGGGCACGCA
CGCCTCAAGTTCGAGGACTAGTGTGAGGCCGTCCCGCACCTCGAACGCGT
ACTCAATGAGGGTGGCCACCCTACTGCCAGCCAGGTAGGTAAGTAGCACA
GGGCCGCGTCCAATTTGAGGACTGTGTGGCCGCCCCGACTCGAACGCGCA
GTCGATGAGGGCGGCCGCCCCACTGCCAGCCAGGTAGGTATGTACTTCCG
AAGTATGCCACAGGGCATGCCCCGCCCTC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig84:623930..637658-

>mRNA_S-ischiensis_contig84.20088.1 ID=mRNA_S-ischiensis_contig84.20088.1|Name=mRNA_S-ischiensis_contig84.20088.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1800bp|location=Sequence derived from alignment at S-ischiensis_contig84:623930..637658- (Schizocladia ischiensis KU_0333)
ATGATGCAATCCCTGTTCGGATTCAACCAAAGCGCCACCATCCTGGTCGA
ATTTGACCATGTGGACAAGAGACCCACCAAGCCCGCCATGGTCGCGGACA
AGAAGGCGCCTGAACCCTTGCCCGTTTTCAAGGGAACCGAGCAATCCCTG
TTCGGATTCAACCAAAGCGCCACCATCCTGGTCGAATTTGACCATGTGGA
CAAGAGACCCACCAAGCCCGCCATGGTCGCGGACAAGAAGGCGCCTGAAC
CCTTGCCCGTTTTCAAGGGAACCGAGCCCGTGAGCGGGACGGTGACGGTG
CTGGTGGCGCCCGGGAAGAAGGTGGAGCACCAGGGGATCAAGTGCGAGAT
GATCGGGCAGATCGCCCGTGAGCGGGACGGTGACGGTGCTGGTGGCGCCC
GGGAAGAAGGTGGAGCACCAGGGGATCAAGTGCGAGATGATCGGGCAGAT
CGAGGTGTACTACGACCGAGGGAACCACTACGAATTCTCCTCTTTGGTGC
GGGAGCTGGACACGTCTGGCATTCTGTTTGGAAATCGGAGGTGTACTACG
ACCGAGGGAACCACTACGAATTCTCCTCTTTGGTGCGGGAGCTGGACACG
TCTGGCATTCTGTTTGGAAATCGGCAATTCCGGTTCGATTTCAGCGCGGT
GGAGAAGCCATACGAGACGTACAGCGGCCTCAACGTGCGCCTACGCTACT
TTGTGCGGGTAACCATATCCAAGCCGTACGGGAACATCACCAAGGACCAT
GATTTCATCGTGCAGAACGTTGAGCCGCAATTCCGGTTCGATTTCAGCGC
GGTGGAGAAGCCATACGAGACGTACAGCGGCCTCAACGTGCGCCTACGCT
ACTTTGTGCGGGTAACCATATCCAAGCCGTACGGGAACATCACCAAGGAC
CATGATTTCATCGTGCAGAACGTTGAGCCGGAACCCGAACCAACGCCCAG
CTTGAAGATGGAAGTGGGGATCGAGGAGTGCCTGCACATCGAGTTCGAGT
ACGACAAGGGGAAATACCACGTGCAAGACGTCGTGATCGGGAAGGAACCC
GAACCAACGCCCAGCTTGAAGATGGAAGTGGGGATCGAGGAGTGCCTGCA
CATCGAGTTCGAGTACGACAAGGGGAAATACCACGTGCAAGACGTCGTGA
TCGGGAAGATCTATTTCCTGCTGGTGCGCATCAAGATCAAGCACATGGAG
CTAGCCATCATCCGGCGGGAGACGGCGGGCCAGGGGCCCAACCAGTACAA
TGAGAGCGAGACCCTCGTCAAGTACGAGGTCATGGACGGGGCGCCCGCCA
AGGATCTATTTCCTGCTGGTGCGCATCAAGATCAAGCACATGGAGCTAGC
CATCATCCGGCGGGAGACGGCGGGCCAGGGGCCCAACCAGTACAATGAGA
GCGAGACCCTCGTCAAGTACGAGGTCATGGACGGGGCGCCCGCCAAGGGC
GAGTGCATCCCCTTGCGAATCTTCCTCAAGCCGTACGGGCTGACGCCCAC
GTACACGCGCGTTAACAACAAGTTCAGCGTCAAGTACTTCCTCAACCTCG
TATTGGTGGACGAGGAAGACCGCAGGCGAGTGCATCCCCTTGCGAATCTT
CCTCAAGCCGTACGGGCTGACGCCCACGTACACGCGCGTTAACAACAAGT
TCAGCGTCAAGTACTTCCTCAACCTCGTATTGGTGGACGAGGAAGACCGC
AGGTACTTCAAGCAGCAAGAGGTGACCCTGTGGAGAAAGTACGTGGGATG
AGTACTTCAAGCAGCAAGAGGTGACCCTGTGGAGAAAGTACGTGGGATGA
back to top