mRNA_S-ischiensis_contig84.20085.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20085.1
Unique NamemRNA_S-ischiensis_contig84.20085.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig84.20085.1 vs. uniprot
Match: A0A6H5JQ30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ30_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 4.830e-14
Identity = 46/132 (34.85%), Postives = 53/132 (40.15%), Query Frame = 2 
Query:  224 QFDRYYNSKDKKVLAWDRITGECSAVETAPSDVLPS*PACFPPNCGCFGPGRALIFGMTCGTCTQTLNSRSDRSVPPPGFSPCAPGNMLEQAMPFLTLFWLNLGLCVAGATTHGHIIKAGWTYVALRACYPV 619
            +F+RYYN KDK +LAWDRI G                                                                 N+LEQAMPFLTLFWLN+GL   GAT+H  +  AGW YV  RA YPV
Sbjct:   56 RFERYYNVKDKAMLAWDRIVG-----------------------------------------------------------------NLLEQAMPFLTLFWLNIGLAALGATSHTGVAIAGWIYVVFRALYPV 122
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BLAST of mRNA_S-ischiensis_contig84.20085.1 vs. uniprot
Match: D7FJ72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ72_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 5.150e-13
Identity = 46/132 (34.85%), Postives = 53/132 (40.15%), Query Frame = 2 
Query:  224 QFDRYYNSKDKKVLAWDRITGECSAVETAPSDVLPS*PACFPPNCGCFGPGRALIFGMTCGTCTQTLNSRSDRSVPPPGFSPCAPGNMLEQAMPFLTLFWLNLGLCVAGATTHGHIIKAGWTYVALRACYPV 619
            +F+RYYN KDK +LAWDRI G                                                                 N+LEQAMPFLTLFWLN+GL   GAT+H  +  AGW YV  RA YPV
Sbjct:  164 RFERYYNVKDKAMLAWDRIVG-----------------------------------------------------------------NLLEQAMPFLTLFWLNIGLAALGATSHTGVAIAGWIYVVFRALYPV 230
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQ30_9PHAE4.830e-1434.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ72_ECTSI5.150e-1334.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:599336..600437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue5.7e-11
Seed eggNOG ortholog2880.D7FJ72
EggNOG free text desc.MAPEG family
EggNOG OGs2EA41@1,2SGDD@2759
Ec32 ortholog descriptionMembrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein
Ec32 orthologEc-10_000190.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size881
Cds size486
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20085.1prot_S-ischiensis_contig84.20085.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 599336..599821 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817333.8800576-CDS-S-ischiensis_contig84:599335..5998211622817333.8800576-CDS-S-ischiensis_contig84:599335..599821Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 599336..599821 -
1695741035.073565-CDS-S-ischiensis_contig84:599335..5998211695741035.073565-CDS-S-ischiensis_contig84:599335..599821Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 599336..599821 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817333.8912425-UTR-S-ischiensis_contig84:599821..6000231622817333.8912425-UTR-S-ischiensis_contig84:599821..600023Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 599822..600023 -
1695741035.0859349-UTR-S-ischiensis_contig84:599821..6000231695741035.0859349-UTR-S-ischiensis_contig84:599821..600023Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 599822..600023 -
1622817333.9021945-UTR-S-ischiensis_contig84:600245..6004371622817333.9021945-UTR-S-ischiensis_contig84:600245..600437Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 600246..600437 -
1695741035.09709-UTR-S-ischiensis_contig84:600245..6004371695741035.09709-UTR-S-ischiensis_contig84:600245..600437Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 600246..600437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20085.1

>prot_S-ischiensis_contig84.20085.1 ID=prot_S-ischiensis_contig84.20085.1|Name=mRNA_S-ischiensis_contig84.20085.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=162bp
MTCGTCTQTLNSRSDRSVPPPGFSPCAPGNMLEQAMPFLTLFWLNLGLCV
AGATTHGHIIKAGWTYVALRACYPVNHTVAAHALWRCGHEPRACSFVLVP
ASSPPVRLPALLCRWSSRPNLAHRHANATVHTSCACGACSAVMPASWPPQ
HCLIVWRLSHEP
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mRNA from alignment at S-ischiensis_contig84:599336..600437-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20085.1 ID=mRNA_S-ischiensis_contig84.20085.1|Name=mRNA_S-ischiensis_contig84.20085.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1102bp|location=Sequence derived from alignment at S-ischiensis_contig84:599336..600437- (Schizocladia ischiensis KU_0333)
CTCGTCGACCTCTCCCCACTTTGCCCCGCTCGCGCCACACTTGTGTTGCG
TGTCTGGCCCGTCGCGTCGAAACCATGGCCTCCCTGCCCGATGCGGTCCG
CGCGGGGGCATTGGTGATGTGTACGTACGTTCTCCTCTACCCTTTGTGCC
TCTGTGTGCAGGCGTACACCAACAACTCCCACAGGCTAAAAGGTGATGCG
CGGGAACTCAGGACATCGTTGTGGTGGGTGTGAAGAATGCAGGCATGCAC
CCCTTGGGCTTGGAAGCCACTTGTGCGCTGTGACTGATCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTTCACTGTT
TGCGTGGACTTAAGCTCGTCTTGCTAAACCTCGTGTTGCGACTGCCAGTT
CGACCGGTACTACAACTCGAAGGACAAGAAGGTGCTGGCATGGGATCGCA
TCACAGGTGAGTGCAGTGCTGTTGAAACTGCACCCAGCGATGTGCTGCCA
TCATGACCTGCGTGCTTTCCCCCCAATTGTGGCTGCTTTGGACCGGGCCG
CGCACTCATATTTGGCATGACGTGTGGCACTTGCACCCAGACCTTGAACT
CACGCTCGGATCGGTCCGTTCCGCCACCGGGTTTCTCGCCTTGCGCTCCA
GGTAACATGTTGGAGCAGGCCATGCCTTTCCTGACGCTCTTCTGGCTGAA
CCTCGGCCTCTGCGTCGCCGGCGCTACCACACACGGGCACATCATCAAAG
CGGGCTGGACCTACGTTGCTCTTCGGGCTTGCTATCCGGTGAACCACACT
GTTGCTGCTCATGCATTGTGGCGCTGCGGGCACGAGCCACGTGCCTGTTC
CTTTGTGCTTGTGCCCGCTTCGTCCCCACCCGTCCGTCTGCCCGCCCTGC
TTTGCCGGTGGAGCTCTCGCCCGAACCTCGCCCACCGCCATGCCAACGCT
ACAGTGCATACATCTTGTGCATGTGGCGCTTGCTCAGCCGTCATGCCTGC
GTCATGGCCACCTCAACACTGCCTCATTGTCTGGCGTCTCTCACACGAAC
CC
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:599336..600437-

>mRNA_S-ischiensis_contig84.20085.1 ID=mRNA_S-ischiensis_contig84.20085.1|Name=mRNA_S-ischiensis_contig84.20085.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=972bp|location=Sequence derived from alignment at S-ischiensis_contig84:599336..600437- (Schizocladia ischiensis KU_0333)
ATGACGTGTGGCACTTGCACCCAGACCTTGAACTCACGCTCGGATCGGTC
CGTTCCGCCACCGGGTTTCTCGCCTTGCGCTCCAGGTAACATGTTGGAGC
AGGCCATGCCTTTCCTGACGCTCTTCTGGCTGAACCTCGGCCTCTGCGTC
GCCGGCGCTACCACACACGGGCACATCATCAAAGCGGGCTGGACCTACGT
TGCTCTTCGGGCTTGCTATCCGGTGAACCACACTGTTGCTGCTCATGCAT
TGTGGCGCTGCGGGCACGAGCCACGTGCCTGTTCCTTTGTGCTTGTGCCC
GCTTCGTCCCCACCCGTCCGTCTGCCCGCCCTGCTTTGCCGGTGGAGCTC
TCGCCCGAACCTCGCCCACCGCCATGCCAACGCTACAGTGCATACATCTT
GTGCATGTGGCGCTTGCTCAGCCGTCATGCCTGCGTCATGGCCACCTCAA
CACTGCCTCATTGTCTGGCGTCTCTCACACGAACCCATGACGTGTGGCAC
TTGCACCCAGACCTTGAACTCACGCTCGGATCGGTCCGTTCCGCCACCGG
GTTTCTCGCCTTGCGCTCCAGGTAACATGTTGGAGCAGGCCATGCCTTTC
CTGACGCTCTTCTGGCTGAACCTCGGCCTCTGCGTCGCCGGCGCTACCAC
ACACGGGCACATCATCAAAGCGGGCTGGACCTACGTTGCTCTTCGGGCTT
GCTATCCGGTGAACCACACTGTTGCTGCTCATGCATTGTGGCGCTGCGGG
CACGAGCCACGTGCCTGTTCCTTTGTGCTTGTGCCCGCTTCGTCCCCACC
CGTCCGTCTGCCCGCCCTGCTTTGCCGGTGGAGCTCTCGCCCGAACCTCG
CCCACCGCCATGCCAACGCTACAGTGCATACATCTTGTGCATGTGGCGCT
TGCTCAGCCGTCATGCCTGCGTCATGGCCACCTCAACACTGCCTCATTGT
CTGGCGTCTCTCACACGAACCC
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