mRNA_S-ischiensis_contig84.20080.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20080.1
Unique NamemRNA_S-ischiensis_contig84.20080.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:534502..538032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size306
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817333.4361012-CDS-S-ischiensis_contig84:534501..5345251622817333.4361012-CDS-S-ischiensis_contig84:534501..534525Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 534502..534525 -
1695741034.8334706-CDS-S-ischiensis_contig84:534501..5345251695741034.8334706-CDS-S-ischiensis_contig84:534501..534525Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 534502..534525 -
1622817333.4469566-CDS-S-ischiensis_contig84:537750..5380321622817333.4469566-CDS-S-ischiensis_contig84:537750..538032Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 537751..538032 -
1695741034.848083-CDS-S-ischiensis_contig84:537750..5380321695741034.848083-CDS-S-ischiensis_contig84:537750..538032Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 537751..538032 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20080.1prot_S-ischiensis_contig84.20080.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 534502..538032 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20080.1

>prot_S-ischiensis_contig84.20080.1 ID=prot_S-ischiensis_contig84.20080.1|Name=mRNA_S-ischiensis_contig84.20080.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=102bp
MRNGRFTAAVTASCLCRCGAFQPASAFQPAPSRWTTTGRPSRGQSTTGRT
RPRAPPAGARRGYRWPRMTIDGEDEGPLDVGAGVGPPGPVDLDQALPVEL
ES
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mRNA from alignment at S-ischiensis_contig84:534502..538032-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20080.1 ID=mRNA_S-ischiensis_contig84.20080.1|Name=mRNA_S-ischiensis_contig84.20080.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3531bp|location=Sequence derived from alignment at S-ischiensis_contig84:534502..538032- (Schizocladia ischiensis KU_0333)
ATGCGCAACGGACGGTTTACCGCCGCAGTGACGGCTTCGTGCCTATGCAG
ATGCGGTGCATTCCAGCCAGCGTCAGCGTTTCAGCCCGCTCCGTCGAGGT
GGACGACGACCGGGCGGCCCTCCCGGGGGCAAAGCACCACCGGGCGAACA
AGACCAAGAGCGCCACCAGCCGGTGCCAGAAGAGGTTATCGATGGCCGCG
CATGACCATTGACGGCGAAGATGAAGGTCCCTTGGATGTTGGGGCTGGGG
TGGGGCCTCCCGGGCCAGTGGACTTGGACCAGGCGAGTACAAACGGGGTG
CGGAAACAATGCTGCTGATGAAATGTGCTCGCTGCCCCTGCCCTTATCAC
CACGCAAGGCAAAAGGTAGGGGTTCCCCAGTAGGAAATCGTGTGTGGACT
GTGCAGAATTCGCTGCCACATGGGATGCGGCGTCGGGCAAGGCACGGGGT
TTTGGGGGTCGTGAGGTTGCACAGGGGTTGTCACATGCCCAGCAGCCGCA
GGGAACTTGCAGGCCTGGTCCTGATCTTTGGCTGCCAGGCCAGCAGGGAT
GCAATGTCGAGAGACGTTTCTCTGCAGTTATCGACAACACTTGTCGATGT
AATTGTTGATGCCTTGCCCTGATGTGGATTGCAATTATACCAGCGATTGG
TTTAGCACATGTAAAGCGAGCGTCCGCCCCCCCTGGAGGGGGCCCGCGGC
CCTACCGCCGGGCTTCCACATTGGGCGTCCCGGACACCGGAGCCCAGATA
GGAGTCCATATATCCACCATCGGTCTGTTTTTGGTCCCATGCAAGTGCTA
GTATGTAGTATGCATTCTTTCAAATGTTTGGCGTCGCCGTATCGGTGGCC
AGCATGACTGGGCACGGGCCGATTCAGCCCCTCCCCAGCGGCGGGGAGCA
TCACGAGTAGCCCCGAGCACGGAACCATGTACCGGAGCTGGGGGGGGGCA
GGGAGCAGTGATGGAATATCGATCGGTAGATAGCTTTCGGGCTCGACTGA
TTTTGTGGGCGGCGTTGCTACTGTAACTACTTGCATTTAGTGTGGGTCAA
ACTATCAAATATCGACTATCGGTAGATATATAGATCAGGTGCGAAGGGCT
TCTGGTGAGGTCCCCACCTTAGGTTGTTGGGACGGGGCCTGGAACTCGCA
TACCGTCAAAATGATTTAAAATCAGTAGTATGCGACAAATAGGTAGATGT
GCTTAGATATTCCATCACTGGCAGTATATATATATATATATATCACTGGC
AGGGGGGGCGGGCAGACAAGCAGGTGCTGGTATGGAGTGACGACAAAACC
TTCGATGACCGCCATCATGGAGTGATGCTCTCGAAATGACTACAATTCCC
CGACCACAGCACCTGCTCCGTCTCAACCGAGGCGCGTGGTCAATTGTCTC
GGGACTACGGCAAGCACAAATGAGTAAATACTCGTACATATATATATATA
TATATATATACAGCAACAGCACGGGCTCCCCGCCCTTGGGGCAGCACTGC
TTGCCAGTTCTCGAGCATAAGTCGCTGCGTCCCGGCATCGGTCCTCCAGC
AAGTTTCCGCAGTCAACTCACGGTGGTGGGGGCGAGCGAGGCCAGTTGGG
TTGAGGCTACGTAGCCTGATGTGGGTGGGCAGTGGTCCGCCAGTGTGCCG
CTGTGCCGTGACGTCATGTGATGTGATGCGTGTACGTGATGTGATGTGAT
GTGATGCTTGTGTACTCTACAGTGGTGCGCTGTACTCGTACTCGTACAGC
AGTCGACATCACATCGCATCGCATCGGTTGCGCTGTGATGCTGGACCACC
CCGGCAAGGGCAAGCTCGCTCAGGTGATAGTTGGAAGTACACGCCCAACG
ATGTTGGATGCGAGTGGGTCGGCACGCTGCAGTTCGACGCCGATGTACTG
TACAGGGTTGGCACCTACCCCCTAAGTGGTGCCCTTTTGTGCCCTTACTT
AGACGCAAATAGGGGCTACTAGACCCAAAATGAAGGCTAATCAGGCCCTA
ATTCACGTCTAAGTGACAACCCTGGATGTACACGTACTTCTGAATTTACG
TTCAGCACCCCTTGGGAGGGTAGGTTGTAGAGCAGCCGCCAGATGGTAAA
TTGGCAGGTTGGTGCTGTGGGAGTGGTGATGAAACCTTCGATGACCGGCG
CTCACCGTGTGATGCTCTCGAAGTGACTACAATTCCCCGACCAGCGTCAG
CGTAGGCCCAAGGTATCGGCCACGCGGAGGGCACTATAGGTTGTAGCCGA
CAAGACGTTAGATATACATATATATATGTACTCATTGGTTTGTCTTGCGA
CATAGCCGTGCGTGCAATGCTGACAGCCCCAAGTCGAAACTTCGGGCTTA
GATAGCAGGAGGTATGTCTGCGCTGCGCTGGAGTGGCGACGAAACCTTCG
ATGACCGCACTCGCGGAGTGATGCTTTCGAAATGACTACAATTCCCCGAC
CAGCTTCAGCTTTGGCCCAGAGCATCCGCCACACGGCGGGTACTATAGGT
TGTAACCGACAAGACGGTACATAGCAGGAGGCATGTATGCGCTGCGCTGG
AGTGACGACGAAACCTTCGATGACCGCACTCGCGGAGTGATGCTCTCGAA
ATGACTACAATTCCCCGACCAGCGTCAGCTTTGGCCCAGGGCATCCGCCA
CACGGCGGGTACTACAGGTTGTAACCGACAAGACGGTAAATAGCAGGAGG
CATGTATGCGCTGCGCTGGAGAGACGACGAAACCTTCGATGACCGCACTC
GCGGAGTGATGCTCTCGAAATGACTACAATTCCCTGACCAGCGTCAGCTT
TGGCCCAGGGCATCCGCCACACGGCGGGTACTATAGGTTGTAACCGACAA
GACGTAAATAGCAGGAGGCATGTATGCGCTGCGCTGGAGTGACGATGAAA
CCTTCGATGACCGCACTCGCAGAGTGATGCTCTCGAAATGACTACAATTC
CCCGACCAGCGTCAGCTTAGGCCCAGGGCATCCGCCACGCGGCGGGTACT
ATAGGTTGTAGCCGACAAGCGGTAATTAGCATGAGGTTAGCCTGTCCGCG
CTGTGCTGGAGTGACGACAGAAGTTCGATGACCAGCACTCGCGGAGTGAT
GCTCTCGAAATGACTACAATTCCCCGACCAGTGTCAGTCAACACGGACCA
AGCCGTCCGCACCGCTCGCTAGCGGAAATTCGCCCACTACCAGCGACGGA
ATATCGATCAGTATACAGTTATTGGGCTCGACTGATTTTGTTGGTGGCGT
TGCTAGCTACTTGGTTTTGGTGGGGGTCAAACTATCGAATATCGACTATC
GATAGATATATAGGTCAGTGCTGTCGATAGCTAGGTTGATTTGCTTAGAT
ATTCCATCACTGCCCGCTACTGTCTTGTGCGTATGTTTCCTGCAGTACGT
AGTACGAGTATGTTTTTGTGCTCGATCCCCTCTTTGAGCTTGCCATACAC
ACCCCGGGGACCAATCTGATCATGAAGGCTTGTTTCGGAAACGCCCCGTC
CTGGCAGGCGTTGCCCGTGGAGCTGGAGTCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:534502..538032-

>mRNA_S-ischiensis_contig84.20080.1 ID=mRNA_S-ischiensis_contig84.20080.1|Name=mRNA_S-ischiensis_contig84.20080.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=612bp|location=Sequence derived from alignment at S-ischiensis_contig84:534502..538032- (Schizocladia ischiensis KU_0333)
ATGCGCAACGGACGGTTTACCGCCGCAGTGACGGCTTCGTGCCTATGCAG
ATGCGGTGCATTCCAGCCAGCGTCAGCGTTTCAGCCCGCTCCGTCGAGGT
GGACGACGACCGGGCGGCCCTCCCGGGGGCAAAGCACCACCGGGCGAACA
AGACCAAGAGCGCCACCAGCCGGTGCCAGAAGAGGTTATCGATGGCCGCG
CATGACCATTGACGGCGAAGATGAAGGTCCCTTGGATGTTGGGGCTGGGG
TGGGGCCTCCCGGGCCAGTGGACTTGGACCAGATGCGCAACGGACGGTTT
ACCGCCGCAGTGACGGCTTCGTGCCTATGCAGATGCGGTGCATTCCAGCC
AGCGTCAGCGTTTCAGCCCGCTCCGTCGAGGTGGACGACGACCGGGCGGC
CCTCCCGGGGGCAAAGCACCACCGGGCGAACAAGACCAAGAGCGCCACCA
GCCGGTGCCAGAAGAGGTTATCGATGGCCGCGCATGACCATTGACGGCGA
AGATGAAGGTCCCTTGGATGTTGGGGCTGGGGTGGGGCCTCCCGGGCCAG
TGGACTTGGACCAGGCGTTGCCCGTGGAGCTGGAGTCGGCGTTGCCCGTG
GAGCTGGAGTCG
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