mRNA_S-ischiensis_contig84.20060.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20060.1
Unique NamemRNA_S-ischiensis_contig84.20060.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig84.20060.1 vs. uniprot
Match: A0A835Z3W7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3W7_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.560e-21
Identity = 56/106 (52.83%), Postives = 67/106 (63.21%), Query Frame = 1 
Query:  175 GYESE-------TGSEVSSAHRSSGASHKPKKRFIWPEELHRDFIAAVLDVGLKFADANTLQDLLPKKDSIQPQAVR--SSLQKMRSFRYQMRKALGGDNLDTVAE 465
            GY+SE       T +  S+     G+  +PKKRFIWPEELHRDFIAAV DVGLK AD   +  LLP  +S    A+R  S+LQKMR+FRYQMRKA  G + D   E
Sbjct:   10 GYDSEYSDSPSYTSTRASARGGGGGSQARPKKRFIWPEELHRDFIAAVFDVGLKSADPRAIASLLPDAESQGGTAIRIKSTLQKMRNFRYQMRKASNGGSSDMPGE 115
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BLAST of mRNA_S-ischiensis_contig84.20060.1 vs. uniprot
Match: A0A6H5L5A6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A6_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.820e-12
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 1 
Query:  304 VGLKFADANTLQDLLPKKD-SIQPQAVRSSLQKMRSFRYQMRKALGGDNLDTVAEMAQKGLDPQQAL------LQQSAMALTR 531
            +GLK A+ + L+DLLPKKD SI+   +RS +QK+RSFRYQM+  L GDNLDT  E+AQKG+ P   L       +  +M+LTR
Sbjct:    1 MGLKKAEPSRLKDLLPKKDRSIEADVMRSHIQKLRSFRYQMKNTLAGDNLDTAEELAQKGILPNGELGMSLEHRRDGSMSLTR 83
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BLAST of mRNA_S-ischiensis_contig84.20060.1 vs. uniprot
Match: D8LDI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDI9_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 8.180e-11
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:  304 VGLKFADANTLQDLLPKKD-SIQPQAVRSSLQKMRSFRYQMRKALGGDNLDTVAEMAQKGL 483
            +GLK A+ + L+DLLPKKD SI+   + S +QK+RSFRYQM+  L GDNLDT  E+AQKG+
Sbjct:    1 MGLKKAEPSRLKDLLPKKDRSIEADVMSSHIQKLRSFRYQMKNTLAGDNLDTAEELAQKGI 61
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BLAST of mRNA_S-ischiensis_contig84.20060.1 vs. uniprot
Match: A0A7S3LD31_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LD31_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.400e-10
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:  193 GSEVSSAHR--SSGASHKPK-------KRFIWPEELHRDFIAAVLDVGLKFADANTLQDLLPKKDSIQPQAVRSSLQKMRSFRYQMRK 429
            G  VSS+ R  SS A  K K       KRF WP++LHRDF+AA+ DVGLK +  +T+ + +PK + I  + V+S LQK R  R + +K
Sbjct:   57 GGSVSSSGRGGSSKARRKAKDTDPRWSKRFTWPDDLHRDFVAAIFDVGLKHSSPSTILEHMPKHEQITSERVKSHLQKYRIHRIKSKK 144
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BLAST of mRNA_S-ischiensis_contig84.20060.1 vs. uniprot
Match: W7U4E9_9STRA (Two-component response regulator arr12 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U4E9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.500e-10
Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:  232 SHKPKKRFIWPEELHRDFIAAVLDVGLKFADANTLQDLLPKKDSIQPQAVRSSLQKMRSFRYQMR 426
            S K KKRF+WP++LHRDF+AA+ DVGLK A   T+ +++     + P  ++S LQK R  R + R
Sbjct:   51 SSKAKKRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKELTPDHIKSHLQKYRLHRERAR 115
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BLAST of mRNA_S-ischiensis_contig84.20060.1 vs. uniprot
Match: A0A7S0UII3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UII3_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.390e-9
Identity = 34/93 (36.56%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:  169 KRGYESETGSEVSSAHRSSGASHKPK------KRFIWPEELHRDFIAAVLDVGLKFADANTLQDLLPKKDSIQPQAVRSSLQKMRSFRYQMRK 429
            KR    E G+ +    +S+      K      KRF WPE+LHRDF++A+ DVGLK +  +T+ + +PK + I  + ++S LQK R  R + +K
Sbjct:  187 KRKPPQEAGAPIGGGKKSARGKKSKKEDGRWSKRFTWPEDLHRDFVSAIFDVGLKHSSPSTIMEHMPKHEQINTERIKSHLQKYRLHRVKSKK 279
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BLAST of mRNA_S-ischiensis_contig84.20060.1 vs. uniprot
Match: A0A7S2YNK9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YNK9_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.090e-9
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:  247 KRFIWPEELHRDFIAAVLDVGLKFADANTLQDLLPKKDSIQPQAVRSSLQKMRSFR 414
            KRF WPEELHRDF++A+ DVGLK +  +TL + +PK + I  + ++S LQK R  R
Sbjct:  193 KRFTWPEELHRDFVSAIFDVGLKHSSPSTLLEQMPKHEQITTERIKSHLQKYRLHR 248
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BLAST of mRNA_S-ischiensis_contig84.20060.1 vs. uniprot
Match: A0A835YLU6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLU6_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.440e-9
Identity = 38/86 (44.19%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:  196 SEVSSAHRSSGASHKPKKRFIWPEELHRDFIAAVLDVGLKFADANTLQDLLPKKDSIQPQA-----VRSSLQKMRSFRYQMRKALG 438
            S+ S +  +S  +   KKRF+WP++LH++FIAAV D GL+ A  + L +LL   + +QPQ      V S+LQKM S R+Q R A G
Sbjct:   28 SKTSDSTSTSKKARSSKKRFLWPDDLHQEFIAAVFDAGLRAATPSALCELL---EDVQPQGATPRRVHSTLQKMSSLRFQARTADG 110
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BLAST of mRNA_S-ischiensis_contig84.20060.1 vs. uniprot
Match: A0A6S6I5N2_9STRA (Phosphorus starvation response 1 n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A6S6I5N2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.750e-9
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 1 
Query:  187 ETGSEVSSAHRSSGASHKPKKRFIWPEELHRDFIAAVLDVGLKFADANTLQDLLPKKDSIQPQAVRSSLQKMRSFRYQMR 426
            ET S  S +  S   + K +KRF+WP++LHRDF+AA+ DVGLK A   T+ +++     + P  ++S LQK R  R + R
Sbjct:   59 ETASVTSES--SINNNSKARKRFVWPDDLHRDFVAAIFDVGLKCASPKTILEMMNNTKDLTPDHIKSHLQKYRLHRERAR 136
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BLAST of mRNA_S-ischiensis_contig84.20060.1 vs. uniprot
Match: A0A7S3QDX4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QDX4_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.800e-9
Identity = 34/106 (32.08%), Postives = 58/106 (54.72%), Query Frame = 1 
Query:  205 SSAHRSSGASHKPKKRFIWPEELHRDFIAAVLDVGLKFADANTLQDLLPKKDSIQPQAVRSSLQKMRSFRYQMRKALGGDNLDTVAEMAQKGLDPQQALLQQSAMA 522
            S   +  G+  +  +RF WP+ELHRDF++AV DVGLK +  + L + +PK + I  + ++S LQK R  R + +K        T+ +M +  ++   + L    +A
Sbjct:  144 SKRKKRGGSDGRWSRRFAWPDELHRDFVSAVFDVGLKHSSPSALLEQMPKHEDITSERIKSHLQKYRLHRQKSKKEFMSSYDRTLMKMKRGEIESNSSSLNSGEVA 249
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A835Z3W7_9STRA3.560e-2152.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5L5A6_9PHAE2.820e-1251.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDI9_ECTSI8.180e-1159.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3LD31_9STRA2.400e-1044.32Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
W7U4E9_9STRA6.500e-1046.15Two-component response regulator arr12 n=2 Tax=Mon... [more]
A0A7S0UII3_9STRA2.390e-936.56Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S2YNK9_9STRA3.090e-951.79Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A835YLU6_9STRA4.440e-944.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S6I5N2_9STRA5.750e-941.25Phosphorus starvation response 1 n=1 Tax=Nannochlo... [more]
A0A7S3QDX4_9STRA5.800e-932.08Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:267786..269114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog2850.Phatr47256
GOsGO:0008150,GO:0048519,GO:0048831,GO:0050789,GO:0050793,GO:0051093,GO:0051239,GO:0051241,GO:0065007,GO:1900055,GO:1900056,GO:1905622,GO:2000024,GO:2000026
EggNOG free text desc.transcription, DNA-templated
EggNOG OGs2C4RN@1,2S88Y@2759,2XCYG@2836
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size539
Cds size537
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817335.6607141-CDS-S-ischiensis_contig84:267785..2679601622817335.6607141-CDS-S-ischiensis_contig84:267785..267960Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 267786..267960 -
1695741036.5030522-CDS-S-ischiensis_contig84:267785..2679601695741036.5030522-CDS-S-ischiensis_contig84:267785..267960Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 267786..267960 -
1622817335.673666-CDS-S-ischiensis_contig84:268752..2691141622817335.673666-CDS-S-ischiensis_contig84:268752..269114Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 268753..269114 -
1695741036.5157368-CDS-S-ischiensis_contig84:268752..2691141695741036.5157368-CDS-S-ischiensis_contig84:268752..269114Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 268753..269114 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20060.1prot_S-ischiensis_contig84.20060.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 267786..269114 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20060.1

>prot_S-ischiensis_contig84.20060.1 ID=prot_S-ischiensis_contig84.20060.1|Name=mRNA_S-ischiensis_contig84.20060.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=179bp
PGRALAGGLTWGLDRAGAVGRGRASPGGSAPAWLGRAGTRKPGGQQRGSV
RRPLIMKRGYESETGSEVSSAHRSSGASHKPKKRFIWPEELHRDFIAAVL
DVGLKFADANTLQDLLPKKDSIQPQAVRSSLQKMRSFRYQMRKALGGDNL
DTVAEMAQKGLDPQQALLQQSAMALTRC*
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mRNA from alignment at S-ischiensis_contig84:267786..269114-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20060.1 ID=mRNA_S-ischiensis_contig84.20060.1|Name=mRNA_S-ischiensis_contig84.20060.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1329bp|location=Sequence derived from alignment at S-ischiensis_contig84:267786..269114- (Schizocladia ischiensis KU_0333)
CCGGGCCGTGCTCTCGCTGGGGGTTTGACCTGGGGGTTGGACCGCGCGGG
CGCGGTTGGCCGCGGACGGGCGAGCCCCGGTGGTAGTGCCCCGGCCTGGC
TCGGTCGCGCTGGGACAAGAAAGCCCGGTGGACAGCAAAGGGGGTCCGTG
CGGCGGCCGCTGATCATGAAGAGGGGGTACGAGAGCGAGACTGGGTCGGA
GGTTTCGTCGGCGCACCGCTCGTCAGGGGCATCACACAAGCCCAAGAAGC
GCTTCATCTGGCCGGAGGAGCTGCATCGGGACTTCATCGCTGCTGTCCTG
GACGTGGGTCTGAAATTTGCGGACGCGAACACCTTGCAAGACCTGCTGCC
GAAGAAGGACAGGTCTGTGTGCATGTACTAGGGCCTGTTTTGCTTGCTTT
GGAGAGCGTAATCGGACTGGCTAAGCCGCTCCCAAGTGCCCTTGTGTGTG
CATGCCAGCGTGGGATGCCTCGTGGACGCCTCAAGTCACCAAGACTGCGC
CGCAATGGGCCCGCTAAACGAAAAAGTTACCTTGCACCGAGGCAGGGTGG
CCCGAATGCCCCAGTCTACTTTGGTGACACAGCCCAGGAGGGATGGGGCT
TGCCGTGTCCGCCTTACCTCGACAGAGACCCCCGTAGCTGAACCGGCTGG
TTACACCCTGCAGGTGGCCAGTCTTCTCGACCCCCGTCCCAAGGGGCGCA
ACTCTGCCCTTTTCGAATCCCCTCCCCCGTCTCGCTTTCCCCTGTGTGCC
ACCGCAGGCCAGCGCTGGAATATCTGAGCAAATCAACCTATTTATCGACA
GTACTGATCTATATATCTGTCGATAGTCGATATTCGATAGTTCGACCCAT
GCTAGATCCAAGTAGTTACAGTAGTAACGCCACCCACAAAATCAGTCTAG
CCCGATAGCTGTCTACTGATCGATATTCCATCACTGCCACTGCCCGACCC
GCCTGCCCTGTCCATTTCAGGATCCAGCCCCAGGCAGTGAGGAGCTCCCT
GCAGAAGATGCGGTCCTTCCGCTGCCCTTAAATTAGAGTGAATTAGCGGT
AATTAGACCTAAAAGGAAGGCTAGTTAGGCCCTATTTTGCCTTTGCTGTA
AGTGCCAACCCTGGCCACCGCTGCCCGACCCACCTGCCCCGTTTGTCGAT
TCAGCATCCAGCCCCAGGCGGTGAGGAGCTCCCTGCAGAAGATGCGGTCC
TTCCGCTACCAGATGAGGAAGGCGTTGGGGGGGGACAACCTGGACACCGT
GGCCGAGATGGCGCAGAAGGGGCTGGACCCGCAGCAGGCGTTGCTACAGC
AGAGCGCCATGGCCCTCACCAGGTGTTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:267786..269114-

>mRNA_S-ischiensis_contig84.20060.1 ID=mRNA_S-ischiensis_contig84.20060.1|Name=mRNA_S-ischiensis_contig84.20060.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1074bp|location=Sequence derived from alignment at S-ischiensis_contig84:267786..269114- (Schizocladia ischiensis KU_0333)
CCGGGCCGTGCTCTCGCTGGGGGTTTGACCTGGGGGTTGGACCGCGCGGG
CGCGGTTGGCCGCGGACGGGCGAGCCCCGGTGGTAGTGCCCCGGCCTGGC
TCGGTCGCGCTGGGACAAGAAAGCCCGGTGGACAGCAAAGGGGGTCCGTG
CGGCGGCCGCTGATCATGAAGAGGGGGTACGAGAGCGAGACTGGGTCGGA
GGTTTCGTCGGCGCACCGCTCGTCAGGGGCATCACACAAGCCCAAGAAGC
GCTTCATCTGGCCGGAGGAGCTGCATCGGGACTTCATCGCTGCTGTCCTG
GACGTGGGTCTGAAATTTGCGGACGCGAACACCTTGCAAGACCTGCTGCC
GAAGAAGGACAGCCGGGCCGTGCTCTCGCTGGGGGTTTGACCTGGGGGTT
GGACCGCGCGGGCGCGGTTGGCCGCGGACGGGCGAGCCCCGGTGGTAGTG
CCCCGGCCTGGCTCGGTCGCGCTGGGACAAGAAAGCCCGGTGGACAGCAA
AGGGGGTCCGTGCGGCGGCCGCTGATCATGAAGAGGGGGTACGAGAGCGA
GACTGGGTCGGAGGTTTCGTCGGCGCACCGCTCGTCAGGGGCATCACACA
AGCCCAAGAAGCGCTTCATCTGGCCGGAGGAGCTGCATCGGGACTTCATC
GCTGCTGTCCTGGACGTGGGTCTGAAATTTGCGGACGCGAACACCTTGCA
AGACCTGCTGCCGAAGAAGGACAGCATCCAGCCCCAGGCGGTGAGGAGCT
CCCTGCAGAAGATGCGGTCCTTCCGCTACCAGATGAGGAAGGCGTTGGGG
GGGGACAACCTGGACACCGTGGCCGAGATGGCGCAGAAGGGGCTGGACCC
GCAGCAGGCGTTGCTACAGCAGAGCGCCATGGCCCTCACCAGGTGTTGAC
ATCCAGCCCCAGGCGGTGAGGAGCTCCCTGCAGAAGATGCGGTCCTTCCG
CTACCAGATGAGGAAGGCGTTGGGGGGGGACAACCTGGACACCGTGGCCG
AGATGGCGCAGAAGGGGCTGGACCCGCAGCAGGCGTTGCTACAGCAGAGC
GCCATGGCCCTCACCAGGTGTTGA
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