mRNA_S-ischiensis_contig84.20050.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20050.1
Unique NamemRNA_S-ischiensis_contig84.20050.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:202626..203318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size381
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20050.1prot_S-ischiensis_contig84.20050.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 202672..203238 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817332.9924648-UTR-S-ischiensis_contig84:202625..2026711622817332.9924648-UTR-S-ischiensis_contig84:202625..202671Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 202626..202671 +
1695741034.4796152-UTR-S-ischiensis_contig84:202625..2026711695741034.4796152-UTR-S-ischiensis_contig84:202625..202671Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 202626..202671 +
1622817333.0261803-UTR-S-ischiensis_contig84:203238..2033181622817333.0261803-UTR-S-ischiensis_contig84:203238..203318Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 203239..203318 +
1695741034.5262806-UTR-S-ischiensis_contig84:203238..2033181695741034.5262806-UTR-S-ischiensis_contig84:203238..203318Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 203239..203318 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817333.0028517-CDS-S-ischiensis_contig84:202671..2026851622817333.0028517-CDS-S-ischiensis_contig84:202671..202685Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 202672..202685 +
1695741034.4989362-CDS-S-ischiensis_contig84:202671..2026851695741034.4989362-CDS-S-ischiensis_contig84:202671..202685Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 202672..202685 +
1622817333.0131712-CDS-S-ischiensis_contig84:202997..2032381622817333.0131712-CDS-S-ischiensis_contig84:202997..203238Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 202998..203238 +
1695741034.5116763-CDS-S-ischiensis_contig84:202997..2032381695741034.5116763-CDS-S-ischiensis_contig84:202997..203238Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 202998..203238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20050.1

>prot_S-ischiensis_contig84.20050.1 ID=prot_S-ischiensis_contig84.20050.1|Name=mRNA_S-ischiensis_contig84.20050.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=85bp
MAEMETRSPAAAAGRGPAWRPGPPDPPPRGLPRGQSQAGRPPRPQLKPLS
WPAHPLAELVDLPWPALHEYCNSCHQACHVAGGK*
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mRNA from alignment at S-ischiensis_contig84:202626..203318+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20050.1 ID=mRNA_S-ischiensis_contig84.20050.1|Name=mRNA_S-ischiensis_contig84.20050.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=693bp|location=Sequence derived from alignment at S-ischiensis_contig84:202626..203318+ (Schizocladia ischiensis KU_0333)
TCGTTAGGTTTTAAAGAGTAAGTTACCCAAGGCGAGAGCGACATTGATGG
CAGAGATGGAGCAGGTGTTCTTCTCGCCAAGTCATTCCAAGAAGCGAGGG
CACGATGAACTCTTTCAGCAGGTCGAGCTTGTGGTTTACCGGGGACTTGA
CGACAACCCCCTGGTCGGCATTGACGACAACCCATTGGTCGGCATTCCAA
ACCCCGTGTGCTGGCTGCTCGCCACGGCGTACCTGCCTTTGTTGCCGACC
AGGGGGTTGTCGTCAAGTCCCCGGTAAACCGCAAGCTCGACCTGCTTGAA
GAGTTCATCGTGCCCTCGCTTCTCAGACACAACTTGGCGAAGAAGAACGC
CTGCTCCATCTCTTCCATCAAGGACGCGCTCGCCTGCTGCAGCAGCAGGC
CGCGGGCCGGCCTGGCGGCCGGGGCCGCCAGACCCGCCGCCACGCGGGCT
GCCCCGAGGTCAATCCCAAGCGGGGCGGCCTCCTCGGCCTCAGCTGAAGC
CCCTCTCATGGCCAGCCCACCCCTTGGCTGAACTGGTTGACCTTCCCTGG
CCTGCACTGCATGAGTACTGTAATAGTTGCCATCAGGCGTGCCATGTTGC
AGGGGGGAAATAATCTACAGTACTCGAGTACGGTGCAAGTAGTCTGGTTG
TGACAACAGCACTACAGCACATAGCACTCCTCCTTCTCCCCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:202626..203318+

>mRNA_S-ischiensis_contig84.20050.1 ID=mRNA_S-ischiensis_contig84.20050.1|Name=mRNA_S-ischiensis_contig84.20050.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=510bp|location=Sequence derived from alignment at S-ischiensis_contig84:202626..203318+ (Schizocladia ischiensis KU_0333)
ATGGCAGAGATGGAATGGCAGAGATGGAGACGCGCTCGCCTGCTGCAGCA
GCAGGCCGCGGGCCGGCCTGGCGGCCGGGGCCGCCAGACCCGCCGCCACG
CGGGCTGCCCCGAGGTCAATCCCAAGCGGGGCGGCCTCCTCGGCCTCAGC
TGAAGCCCCTCTCATGGCCAGCCCACCCCTTGGCTGAACTGGTTGACCTT
CCCTGGCCTGCACTGCATGAGTACTGTAATAGTTGCCATCAGGCGTGCCA
TGTTGCAGGGGGGAAATAAGACGCGCTCGCCTGCTGCAGCAGCAGGCCGC
GGGCCGGCCTGGCGGCCGGGGCCGCCAGACCCGCCGCCACGCGGGCTGCC
CCGAGGTCAATCCCAAGCGGGGCGGCCTCCTCGGCCTCAGCTGAAGCCCC
TCTCATGGCCAGCCCACCCCTTGGCTGAACTGGTTGACCTTCCCTGGCCT
GCACTGCATGAGTACTGTAATAGTTGCCATCAGGCGTGCCATGTTGCAGG
GGGGAAATAA
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