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Homology
BLAST of mRNA_S-ischiensis_contig84.20045.1 vs. uniprot
Match: D8LQ12_ECTSI (Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ12_ECTSI) HSP 1 Score: 82.4 bits (202), Expect = 5.090e-13 Identity = 131/203 (64.53%), Postives = 144/203 (70.94%), Query Frame = 1
Query: 391 AEAPFRVVLHHAVITGNLAAVRSALGGGASIKERDDLRHSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLACTRSGAWAALRRVIELLVSHGGDSALSATDELGQTPLHVAASCGGVGATCLLLALGADPFARDGKGRAPGHAFQRTVPTDARRQVAEALRAA 999
A++PFRVVL AV+ +L A R+AL GA ERDDL HS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LA T++ R++ ELL G SAL A DEL QTPLHVAASCG GA +LL L ADP A D KGR G +F R V AR + +L AA
Sbjct: 132 ADSPFRVVLQKAVVESDLDAARAALRSGADPNERDDLCHSSLHFAAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLASTQACEKDTFRQMAELL----GPSALLARDELQQTPLHVAASCGNRGAVSVLLELNADPEATDRKGRVAGQSFLRQVTRRARADIRASLAAA 330
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 85.1 |
| Seed ortholog evalue | 6.8e-14 |
| Seed eggNOG ortholog | 2880.D8LQ12 |
| EggNOG free text desc. | response to abiotic stimulus |
| EggNOG OGs | COG0666@1,KOG4177@2759 |
| Ec32 ortholog description | Ankyrin repeat-containing domain |
| Ec32 ortholog | Ec-15_001350.1 |
| COG Functional cat. | G |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 1940 |
| Cds size | 1020 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817334.3850842-UTR-S-ischiensis_contig84:112139..112304 | 1622817334.3850842-UTR-S-ischiensis_contig84:112139..112304 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig84 112140..112304 + |
| 1695741035.456584-UTR-S-ischiensis_contig84:112139..112304 | 1695741035.456584-UTR-S-ischiensis_contig84:112139..112304 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig84 112140..112304 + |
| 1622817334.4203875-UTR-S-ischiensis_contig84:113509..114264 | 1622817334.4203875-UTR-S-ischiensis_contig84:113509..114264 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig84 113510..114264 + |
| 1695741035.4929562-UTR-S-ischiensis_contig84:113509..114264 | 1695741035.4929562-UTR-S-ischiensis_contig84:113509..114264 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig84 113510..114264 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817334.3969796-CDS-S-ischiensis_contig84:112304..112736 | 1622817334.3969796-CDS-S-ischiensis_contig84:112304..112736 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig84 112305..112736 + |
| 1695741035.4728363-CDS-S-ischiensis_contig84:112304..112736 | 1695741035.4728363-CDS-S-ischiensis_contig84:112304..112736 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig84 112305..112736 + |
| 1622817334.408872-CDS-S-ischiensis_contig84:112921..113509 | 1622817334.408872-CDS-S-ischiensis_contig84:112921..113509 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig84 112922..113509 + |
| 1695741035.4833963-CDS-S-ischiensis_contig84:112921..113509 | 1695741035.4833963-CDS-S-ischiensis_contig84:112921..113509 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig84 112922..113509 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig84.20045.1 >prot_S-ischiensis_contig84.20045.1 ID=prot_S-ischiensis_contig84.20045.1|Name=mRNA_S-ischiensis_contig84.20045.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=340bp
MCDVAMPQAVEKPGTGAAPMQQLQLPPVIDKEGLDDPTTRAVRCLQSLSL
ECQIELGEIISSSPSHAKRRSWQPAAEAPFRVVLHHAVITGNLAAVRSAL
GGGASIKERDDLRHSVLHFAVANRDVRMVRELLSQGANVNVANKAGWSPL
HYSVLGCDPDIVQALLEHGAYPSYRDNCLITPLHLACTRSGAWAALRRVI
ELLVSHGGDSALSATDELGQTPLHVAASCGGVGATCLLLALGADPFARDG
KGRAPGHAFQRTVPTDARRQVAEALRAAAQLTDAARQLETEGLPPAEQVS
RLLESLQRQSKVPAWAREGSLGGGGGGGAMAWMAPAGRA* back to topmRNA from alignment at S-ischiensis_contig84:112140..114264+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig84.20045.1 ID=mRNA_S-ischiensis_contig84.20045.1|Name=mRNA_S-ischiensis_contig84.20045.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2125bp|location=Sequence derived from alignment at S-ischiensis_contig84:112140..114264+ (Schizocladia ischiensis KU_0333)
GTTGTACAAACGGGAGGGCAAAACGAGCCAGCGACGACGCTTGGAGGGGC
TAAGCGTTCCCGAAAGCGCGGACGGAGCTTACCGACGTCAAACACCGCGC
CGGTGCTACGTCGCCGCTTGCCTTCGACAGCACTGCAGGTAGTTGCTGCG
CCAGAGCCATCATCGATGTGCGACGTTGCTATGCCACAGGCGGTGGAGAA
GCCAGGGACCGGGGCGGCACCAATGCAGCAGCTGCAGCTTCCGCCCGTGA
TTGACAAGGAAGGGCTCGACGACCCCACAACGCGGGCCGTGCGCTGCCTC
CAGAGCCTCTCCCTCGAGTGCCAGATCGAGTTGGGAGAGATCATCTCGTC
GTCTCCCTCGCACGCCAAGCGACGGTCCTGGCAGCCCGCAGCCGAGGCCC
CGTTCCGTGTGGTGCTGCACCACGCAGTCATCACCGGGAATCTGGCGGCC
GTACGGTCCGCCCTCGGGGGTGGCGCGAGCATCAAGGAACGGGATGACCT
GCGACACAGCGTCCTCCACTTCGCCGTTGCAAACCGCGACGTTCGAATGG
TACGGGAGCTCCTTTCGCAGGGCGCGAATGTCAACGTGGCCAACAAGGTG
AGGGCGAGCACCGCCTAATGCGACTGTGTGAGTGTGTGTGTGTGTGTTGA
CCCGACCAGGCGCCAGCGGCACTGCAGGTAGTTTTCGAATTTTGGGCGGG
ACCCCACTGCCATTGCACACACATCTCAGTTTGCTTTATTGACACCAGCG
TCACGCCCCCCACTCTTGTGCTCCGCGAACAGGCTGGTTGGTCCCCTCTG
CACTACTCGGTCCTTGGGTGCGACCCAGATATCGTCCAAGCCCTCTTGGA
GCACGGGGCCTACCCGTCCTACCGGGATAACTGCCTCATCACCCCCCTCC
ACCTGGCCTGCACCCGCTCGGGGGCCTGGGCCGCCCTGCGCCGCGTCATC
GAGCTACTCGTCTCCCACGGCGGGGACAGCGCCTTGTCCGCCACCGACGA
GCTCGGGCAGACGCCGCTCCACGTCGCGGCCAGCTGCGGCGGCGTCGGCG
CCACGTGCCTCCTCCTCGCCCTGGGCGCGGACCCCTTTGCGCGGGACGGC
AAGGGCCGCGCGCCAGGGCACGCCTTCCAGCGCACGGTCCCCACGGACGC
GCGGCGGCAGGTGGCGGAGGCGCTCCGGGCGGCGGCGCAGCTAACAGACG
CGGCGAGGCAGCTGGAGACAGAGGGGCTCCCGCCTGCGGAGCAGGTGTCC
CGCCTTTTGGAGAGCTTGCAGAGGCAGAGCAAGGTCCCCGCTTGGGCCCG
GGAAGGCAGTCTCGGCGGCGGCGGTGGTGGCGGCGCCATGGCGTGGATGG
CGCCCGCTGGTCGCGCGTGATCCCTGGTGGTTGTCATGTGCTTGCTTTGT
TTTTCATTTTCCCTGGTGGCGGAGACTGTGCCCCCGCTGTGTGAGAGGGT
CTGTGGCGTACGTGTGGCCGTTGTCCCGAGTGTTGCCCCGTGTTTTGTAC
TGTATGATGTGTGCTGTAAGACCTTGTGTGTTGACGTCGGTGGTGTGTCT
GTCTTGTTGTGTGGTACTTCCGTGTACTGTACAGTACTGTAACCCATAGT
GTTATCCGTAGTGTACTGTATCGCCATTGCCATGCCCTGTCCGTGGCCGC
CATTGTACTTGTAAGTACCCGATTGTCTTGTTTGTTGAATTTGTCCTGGT
TGTTGCGAGGGAAGACGGGCGGGGACACGCGCCCACGGTCTGCACCGTGA
GACTGTGGGCACTTTGCCCAAAACCCTCTCCGCGTTGAACGTCGAGTATG
TATTCGCCCATCGTCGTCGAGACTGTGCGTCGTTTGTGCGAGGCCGCACC
ACCCACAGCACGTTTCCCCGTATGTTATGTAAGACCCCGGTAGAGTATTC
ACACGACGATGATGTTGCCCTGAGACGGCCGAGAGTTACATGAGAGCAGC
CACCTCGACGTTGCAATTGCAAATGACTGATTTATGGGACGAAGCGGGCA
GAGGATGCGCAAGCCGGTCACGGGCCTGGAACCCTGGCTGCTACTGTGCA
CCTGCGACCGATGGAACGCCCCGTTACTTGACAATCTGCCACGCGCAGGT
TGCTTGACAATGACAGCTGATGACC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig84:112140..114264+ >mRNA_S-ischiensis_contig84.20045.1 ID=mRNA_S-ischiensis_contig84.20045.1|Name=mRNA_S-ischiensis_contig84.20045.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2040bp|location=Sequence derived from alignment at S-ischiensis_contig84:112140..114264+ (Schizocladia ischiensis KU_0333)
ATGTGCGACGTTGCTATGCCACAGGCGGTGGAGAAGCCAGGGACCGGGGC
GGCACCAATGCAGCAGCTGCAGCTTCCGCCCGTGATTGACAAGGAAGGGC
TCGACGACCCCACAACGCGGGCCGTGCGCTGCCTCCAGAGCCTCTCCCTC
GAGTGCCAGATCGAGTTGGGAGAGATCATCTCGTCGTCTCCCTCGCACGC
CAAGCGACGGTCCTGGCAGCCCGCAGCCGAGGCCCCGTTCCGTGTGGTGC
TGCACCACGCAGTCATCACCGGGAATCTGGCGGCCGTACGGTCCGCCCTC
GGGGGTGGCGCGAGCATCAAGGAACGGGATGACCTGCGACACAGCGTCCT
CCACTTCGCCGTTGCAAACCGCGACGTTCGAATGGTACGGGAGCTCCTTT
CGCAGGGCGCGAATGTCAACGTGGCCAACAAGATGTGCGACGTTGCTATG
CCACAGGCGGTGGAGAAGCCAGGGACCGGGGCGGCACCAATGCAGCAGCT
GCAGCTTCCGCCCGTGATTGACAAGGAAGGGCTCGACGACCCCACAACGC
GGGCCGTGCGCTGCCTCCAGAGCCTCTCCCTCGAGTGCCAGATCGAGTTG
GGAGAGATCATCTCGTCGTCTCCCTCGCACGCCAAGCGACGGTCCTGGCA
GCCCGCAGCCGAGGCCCCGTTCCGTGTGGTGCTGCACCACGCAGTCATCA
CCGGGAATCTGGCGGCCGTACGGTCCGCCCTCGGGGGTGGCGCGAGCATC
AAGGAACGGGATGACCTGCGACACAGCGTCCTCCACTTCGCCGTTGCAAA
CCGCGACGTTCGAATGGTACGGGAGCTCCTTTCGCAGGGCGCGAATGTCA
ACGTGGCCAACAAGGCTGGTTGGTCCCCTCTGCACTACTCGGTCCTTGGG
TGCGACCCAGATATCGTCCAAGCCCTCTTGGAGCACGGGGCCTACCCGTC
CTACCGGGATAACTGCCTCATCACCCCCCTCCACCTGGCCTGCACCCGCT
CGGGGGCCTGGGCCGCCCTGCGCCGCGTCATCGAGCTACTCGTCTCCCAC
GGCGGGGACAGCGCCTTGTCCGCCACCGACGAGCTCGGGCAGACGCCGCT
CCACGTCGCGGCCAGCTGCGGCGGCGTCGGCGCCACGTGCCTCCTCCTCG
CCCTGGGCGCGGACCCCTTTGCGCGGGACGGCAAGGGCCGCGCGCCAGGG
CACGCCTTCCAGCGCACGGTCCCCACGGACGCGCGGCGGCAGGTGGCGGA
GGCGCTCCGGGCGGCGGCGCAGCTAACAGACGCGGCGAGGCAGCTGGAGA
CAGAGGGGCTCCCGCCTGCGGAGCAGGTGTCCCGCCTTTTGGAGAGCTTG
CAGAGGCAGAGCAAGGTCCCCGCTTGGGCCCGGGAAGGCAGTCTCGGCGG
CGGCGGTGGTGGCGGCGCCATGGCGTGGATGGCGCCCGCTGGTCGCGCGT
GAGCTGGTTGGTCCCCTCTGCACTACTCGGTCCTTGGGTGCGACCCAGAT
ATCGTCCAAGCCCTCTTGGAGCACGGGGCCTACCCGTCCTACCGGGATAA
CTGCCTCATCACCCCCCTCCACCTGGCCTGCACCCGCTCGGGGGCCTGGG
CCGCCCTGCGCCGCGTCATCGAGCTACTCGTCTCCCACGGCGGGGACAGC
GCCTTGTCCGCCACCGACGAGCTCGGGCAGACGCCGCTCCACGTCGCGGC
CAGCTGCGGCGGCGTCGGCGCCACGTGCCTCCTCCTCGCCCTGGGCGCGG
ACCCCTTTGCGCGGGACGGCAAGGGCCGCGCGCCAGGGCACGCCTTCCAG
CGCACGGTCCCCACGGACGCGCGGCGGCAGGTGGCGGAGGCGCTCCGGGC
GGCGGCGCAGCTAACAGACGCGGCGAGGCAGCTGGAGACAGAGGGGCTCC
CGCCTGCGGAGCAGGTGTCCCGCCTTTTGGAGAGCTTGCAGAGGCAGAGC
AAGGTCCCCGCTTGGGCCCGGGAAGGCAGTCTCGGCGGCGGCGGTGGTGG
CGGCGCCATGGCGTGGATGGCGCCCGCTGGTCGCGCGTGA back to top
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