mRNA_S-ischiensis_contig84.20040.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig84.20040.1
Unique NamemRNA_S-ischiensis_contig84.20040.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig84.20040.1 vs. uniprot
Match: D8LDH7_ECTSI (YihA6, YihA/EngB-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH7_ECTSI)

HSP 1 Score: 297 bits (760), Expect = 6.190e-89
Identity = 144/216 (66.67%), Postives = 175/216 (81.02%), Query Frame = 2 
Query:  164 KDPFASERPVTSKFNVGDIANVEFVGSYVEDSTAWPKTMLPEIAFLGRSNVGKSSMLNCLFGESVAKVSKTPGRTRQINLFKAQNAKGRDVCWFADLPGYGYAKMSKDTQRSIETFLEKYLAMRSNLKLLVLLVDSRREPLTSDAGIVSFVESS-DVPFKLVMVATKVDKLNMLEAATNIRRLREAFELPPGLPIEFSSVTGRGKKDLWRYIREAC 808
            ++PF  E+ + SKF   DI  VEFVGSY +    WP+T LPEIAFLGRSNVGKSSMLN LFGE VAKVSKTPGRTR+IN+FKA+N   +DVC+FADLPGYGYAKMSKD QR+IE FL  YL  RSNLKLL+LL DSRREPL SDAG++ + E   D  +K+++VATKVDKLN +E+  NI+RL+EAFELPPGLP+ FS++TG+GKK++W YIR+A 
Sbjct:  244 RNPFKKEK-IVSKFGANDIRKVEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFGEPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQRTIEKFLGMYLERRSNLKLLILLADSRREPLASDAGVLEYAEDKEDRLYKILLVATKVDKLNTMESVVNIKRLQEAFELPPGLPVSFSAITGQGKKEIWSYIRQAA 458
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BLAST of mRNA_S-ischiensis_contig84.20040.1 vs. uniprot
Match: A0A836CAC1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAC1_9STRA)

HSP 1 Score: 246 bits (629), Expect = 2.770e-73
Identity = 121/200 (60.50%), Postives = 155/200 (77.50%), Query Frame = 2 
Query:  227 VEFVGSYVEDSTAWPKTMLPEIAFLGRSNVGKSSMLNCLFGESVAKV----SKTPGRTRQINLFKAQNAKG--RDVCWFADLPGYGYAKMSKDTQRSIETFLEKYLAMRSNLKLLVLLVDSRREPLTSDAGIVSFVESSDVPFKLVMVATKVDKLNMLEAATNIRRLREAFELPPGLPIEFSSVTGRGKKDLWRYIREAC 808
            VEF+GSY ED  AWP   +PE+AFLGRSNVGKSSMLNCLFGE  AKV    SKTPGRT+ IN+F A+   G  R++C FADLPGYGYAK++K+  R+IE FL +YL  R+ LKLL+LLVD+RR+ L SDA I+ F     V F++++VATKVDKL+ +EAA N+ R+R+ F LP  LP+ FS+VTG+G+K++W+YIREAC
Sbjct:    1 VEFIGSYAEDENAWPSEAVPEVAFLGRSNVGKSSMLNCLFGERAAKVRFVVSKTPGRTQLINIFSARGGAGGARELCRFADLPGYGYAKLAKEDMRAIEGFLMQYLERRAQLKLLILLVDARRDALDSDAEILDFAADMGVGFRVLVVATKVDKLSAMEAALNLARIRDGFGLPEELPLPFSAVTGQGRKEVWQYIREAC 200
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BLAST of mRNA_S-ischiensis_contig84.20040.1 vs. uniprot
Match: A0A4D9CYN5_9STRA (EngB-type G domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYN5_9STRA)

HSP 1 Score: 187 bits (476), Expect = 2.500e-50
Identity = 102/205 (49.76%), Postives = 140/205 (68.29%), Query Frame = 2 
Query:  200 KFNVGDIANVEFVGSYVEDSTAWPKTMLPEIAFLGRSNVGKSSMLNCLFG--ESVAKVSKTPGRTRQINLFKAQNAKGRDVCWFADLPGYGYAKMSKDTQRSIETFLEKYLAMRSNLKLLVLLVDSRREPLTSDAGIVSFVESSDVPFKLVMVATKVDKLNMLEAATNIRRLREAFELPPGLPIEFSSVTGRGKKDLWRYIREAC 808
            +F++ DI +V F GS+++D    P   LPE+A  GRSNVGKSS+LNCL G  + VA VSKTPGRT+QINLFK  ++ G  V    DLPGYGYAK+ K  Q  I   + +YL+ R  L+L VLL+D+RREP  SD  ++ +  +++VP  L+++ATKVDKL   +   N+ RL + F+LP G+P+ FSSVTG  K+ +W  IR+AC
Sbjct:   63 QFSIDDIQDVTFEGSHLDDV---PFLGLPEVAVFGRSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNG-PVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANVP--LLVLATKVDKLKHEDMEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAIWNAIRDAC 261
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BLAST of mRNA_S-ischiensis_contig84.20040.1 vs. uniprot
Match: W7U6M2_9STRA (Ribosome biogenesis gtp-binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6M2_9STRA)

HSP 1 Score: 186 bits (473), Expect = 1.110e-48
Identity = 101/205 (49.27%), Postives = 140/205 (68.29%), Query Frame = 2 
Query:  200 KFNVGDIANVEFVGSYVEDSTAWPKTMLPEIAFLGRSNVGKSSMLNCLFG--ESVAKVSKTPGRTRQINLFKAQNAKGRDVCWFADLPGYGYAKMSKDTQRSIETFLEKYLAMRSNLKLLVLLVDSRREPLTSDAGIVSFVESSDVPFKLVMVATKVDKLNMLEAATNIRRLREAFELPPGLPIEFSSVTGRGKKDLWRYIREAC 808
            +F++ DI +V F GS+++D    P   LPE+A  GRSNVGKSS+LNCL G  + VA VSKTPGRT+QINLFK  ++ G  V    DLPGYGYAK+ K  Q  I   + +YL+ R  L+L VLL+D+RREP  SD  ++ +  ++++P  L+++ATKVDKL   +   N+ RL + F+LP G+P+ FSSVTG  K+ +W  IR+AC
Sbjct:  169 QFSIDDIQDVTFEGSHLDDV---PFLGLPEVAVFGRSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNG-PVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIP--LLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAIRDAC 367
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BLAST of mRNA_S-ischiensis_contig84.20040.1 vs. uniprot
Match: A0A7S3U5N2_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U5N2_9SPIT)

HSP 1 Score: 174 bits (440), Expect = 8.230e-46
Identity = 96/202 (47.52%), Postives = 127/202 (62.87%), Query Frame = 2 
Query:  215 DIANVEFVGSYVEDSTAWPKTMLPEIAFLGRSNVGKSSMLNCLFG--ESVAKVSKTPGRTRQINLFKAQNAKGRDVCWFADLPGYGYAKMSKDTQRSIETFLEKYLAMRSNLKLLVLLVDSRREPLTSDAGIVSFVESSDVPFKLVMVATKVDKLNMLEAATNIRRLREAFELPPGLPIEFSSVTGRGKKDLWRYIREACRS 814
            D + V FV S+  D    P++ LPEI  +GRSNVGKSS LNCL G  + VA+VSKTPGRTR INLF    A     C   DLPGYG+AK+S + Q      +EKYL +R NL+  V+ +DS+REP   DA I+ F+  +++P   ++VATKVDKL   +    +  LR+  +L P  PI FSSVT  G+K++W Y+ E C S
Sbjct:   47 DRSGVTFVNSFT-DPAQMPRSTLPEITLVGRSNVGKSSALNCLSGRRKKVAQVSKTPGRTRLINLFSVGKA-----CMITDLPGYGFAKVSVEMQEEWRKNVEKYLRLRDNLRAAVVFIDSQREPQQVDAQILDFLMYNEIP--ALVVATKVDKLKSSQLQPCMAALRKGLQLSPDQPIPFSSVTDTGRKEVWNYLEEMCTS 240
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BLAST of mRNA_S-ischiensis_contig84.20040.1 vs. uniprot
Match: A0A0G4EB47_VITBC (EngB-type G domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EB47_VITBC)

HSP 1 Score: 178 bits (451), Expect = 7.370e-45
Identity = 100/216 (46.30%), Postives = 134/216 (62.04%), Query Frame = 2 
Query:  203 FNVGDIANVEFVGSYVEDSTAWPKTMLPEIAFLGRSNVGKSSMLNCLFGESV----AKVSKTPGRTRQINLFKAQNAKGRDVCWFADLPGYGYAK-MSKDTQRSIETFLEKYLAMRSNLKLLVLLVDSRREPLTSDAGIVSFVESSDVPFKLVMVATKVDKLNMLEAATNIRRLREAFELPPGLPIEFSSVTGRGKKDLWRYIREACRSNWDQEGD 835
            F   D+  V F+G Y EDS   P T LPE+AFLGRSNVGKSSMLN L   +      ++SKTPGRT+QINLF+  + + R +    DLPGYGY + +SK+  + I +FL  YL  R+ L+L +LLVDSR      DA +++ + S DVP+  ++ ATKVD+L   E   N+ RLRE  +LP   P+ FSS+TG     LWR I +AC   ++ E D
Sbjct:  113 FEREDVGAVSFIGGY-EDSRDLPATGLPEVAFLGRSNVGKSSMLNSLQSRASERAEVRISKTPGRTQQINLFRLSDRRKRGLVVLVDLPGYGYTRSISKEDTKKIRSFLLAYLRKRAELRLFLLLVDSRLPAQEVDADVLANLRSMDVPY--LVAATKVDRLKASERDANLARLREELQLPSWQPVPFSSMTGENGPLLWRAISDACIGQYEPEAD 325
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BLAST of mRNA_S-ischiensis_contig84.20040.1 vs. uniprot
Match: A0A7S0LL08_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LL08_9EUKA)

HSP 1 Score: 169 bits (429), Expect = 1.070e-44
Identity = 95/202 (47.03%), Postives = 125/202 (61.88%), Query Frame = 2 
Query:  215 DIANVEFVGSYVEDSTAWPKTMLPEIAFLGRSNVGKSSMLNCLFG--ESVAKVSKTPGRTRQINLFKAQNAKGRDVCWFADLPGYGYAKMSKDTQRSIETFLEKYLAMRSNLKLLVLLVDSRREPLTSDAGIVSFVESSDVPFKLVMVATKVDKLNMLEAATNIRRLREAFELPPGLPIEFSSVTGRGKKDLWRYIREACRS 814
            +   VEF+GS+ E     P   LPEI   GRSNVGKSS LN L G  +  AKVSKTPGRTR INLFK   A     C   DLPGYG+AK+S++ Q      +E Y   R  L+L VL VD++REP  SD  ++ F+  +++P   V+VATK DKL+      ++R+L E F+LP G PI FSS TG G ++LW+Y+++   S
Sbjct:   18 EAQGVEFLGSFTEPR-GMPNLRLPEITLAGRSNVGKSSALNALSGRRKKAAKVSKTPGRTRLINLFKVGKA-----CAITDLPGYGFAKVSREMQDDWRRSIEAYFRNREQLRLAVLFVDAQREPQESDGQLLEFLLYNELP--TVVVATKADKLSQTRLKASLRQLSEEFDLPEGQPIPFSSQTGAGVRELWQYLQQETMS 211
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BLAST of mRNA_S-ischiensis_contig84.20040.1 vs. uniprot
Match: A0A8J9TFI9_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TFI9_PHATR)

HSP 1 Score: 166 bits (420), Expect = 1.230e-43
Identity = 91/202 (45.05%), Postives = 126/202 (62.38%), Query Frame = 2 
Query:  227 VEFVGSYVEDSTAWPKTMLPEIAFLGRSNVGKSSMLNCLFGES--------VAKVSKTPGRTRQINLFKAQNAKGRDVCWFADLPGYGYAKMSKDTQRSIETFLEKYLAMRSNLKLLVLLVDSRREPLTSDAGIVSFVESSDVPFKLVMVATKVDKLNMLEAATNIRRLREAFELPPGLPIEFSSVTGRGKKDLWRYIREAC 808
            ++F+GS++ D    P+  +PEIAFLGRSNVGKSS+LN L   +         A+V KTPG T  +NL+   +AK   +  + DLPG+GYAK+SK  + S++   E YLA R  L L +LLVD+RR P   D  +++ +    +P  +V+VATKVDKLN  E  + +  +R+   LP G P+  SSVTG G +DLWR I EAC
Sbjct:    1 MQFLGSFL-DKQLPPRIGVPEIAFLGRSNVGKSSLLNRLSSSARQLPTHNDQARVGKTPGATASVNLYALLDAKESQILGWVDLPGFGYAKLSKQVKESVQETAENYLARRQELVLGILLVDARRIPSNDDRAVLAALFDMGIP--VVVVATKVDKLNPNELRSGLAEIRDGLGLPDGQPLPVSSVTGEGTRDLWRIILEAC 199
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BLAST of mRNA_S-ischiensis_contig84.20040.1 vs. uniprot
Match: A0A7S1JUJ9_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1JUJ9_9ALVE)

HSP 1 Score: 166 bits (421), Expect = 1.270e-42
Identity = 95/201 (47.26%), Postives = 126/201 (62.69%), Query Frame = 2 
Query:  203 FNVGDIANVEFVGSYVEDSTAWPKTMLPEIAFLGRSNVGKSSMLNCLFGESV----AKVSKTPGRTRQINLFKAQNAKGRDVCWFADLPGYGYAK-MSKDTQRSIETFLEKYLAMRSNLKLLVLLVDSRREPLTSDAGIVSFVESSDVPFKLVMVATKVDKLNMLEAATNIRRLREAFELPPGLPIEFSSVTGRGKKDLWR 790
            F   D+  V F+G Y EDS   P T LPE+AFLGRSNVGKSSMLN L   +      ++SKTPGRT+QINLF+  + + R +    DLPGYGY + +SK+  + I +FL  YL  R+ L+L +LLVDSR      DA +++ + S DVP+  ++ ATKVD+L   E   N+ RLRE  +LP   P+ FSS+TG     LWR
Sbjct:   90 FEREDVGAVSFIGGY-EDSRDLPATGLPEVAFLGRSNVGKSSMLNSLQSRASERAEVRISKTPGRTQQINLFRLSDRRKRGLVVLVDLPGYGYTRSISKEDTKKIRSFLLAYLRKRAELRLFLLLVDSRLPAQEVDADVLANLRSMDVPY--LVAATKVDRLKASERDANLARLREELQLPSWQPVPFSSMTGENGPLLWR 287
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BLAST of mRNA_S-ischiensis_contig84.20040.1 vs. uniprot
Match: A0A1Z5K8Z3_FISSO (EngB-type G domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8Z3_FISSO)

HSP 1 Score: 166 bits (421), Expect = 2.460e-42
Identity = 89/202 (44.06%), Postives = 126/202 (62.38%), Query Frame = 2 
Query:  227 VEFVGSYVEDSTAWPKTMLPEIAFLGRSNVGKSSMLNCLFGESV-----AKVSKTPGRTRQINLFKAQNAKGRDVCWFADLPGYGYAKMSKDTQRSIETFLEKYLAMRSNLKLLVLLVDSRREPLTSDAGIVSFVESSDVPFKLVMVATKVDKLNML-EAATNIRRLREAFELPPGLPIEFSSVTGRGKKDLWRYIREACRS 814
            ++ VG+Y++D    P+  +PE+AFLGRSNVGKSS+LN L   +V     A+V KTPG T  +NL+   N K +D+  F DLPG+G+AK+SKDT+ ++E   E YL  R  L L +LLVD RR P   D  +++ +    VP  + +VATK DK++ L E    +  + +   LP G P+  SSVTG G +DLWR + EAC +
Sbjct:    3 MKMVGAYLDDRQLPPRLGVPEVAFLGRSNVGKSSLLNRLTASAVQSSTKARVGKTPGATASVNLYSLYNRKEKDLLGFVDLPGFGFAKLSKDTKAAVEAAAENYLGKRKELMLGILLVDIRRIPSEDDRAVLAALFDMGVP--IAVVATKTDKISSLNEREKQLLEINQQLGLPEGQPLCVSSVTGEGIRDLWRIVLEACEA 202
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig84.20040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDH7_ECTSI6.190e-8966.67YihA6, YihA/EngB-like GTPase n=1 Tax=Ectocarpus si... [more]
A0A836CAC1_9STRA2.770e-7360.50P-loop containing nucleoside triphosphate hydrolas... [more]
A0A4D9CYN5_9STRA2.500e-5049.76EngB-type G domain-containing protein n=1 Tax=Nann... [more]
W7U6M2_9STRA1.110e-4849.27Ribosome biogenesis gtp-binding protein n=1 Tax=Na... [more]
A0A7S3U5N2_9SPIT8.230e-4647.52Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A0G4EB47_VITBC7.370e-4546.30EngB-type G domain-containing protein n=2 Tax=Vitr... [more]
A0A7S0LL08_9EUKA1.070e-4447.03Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A8J9TFI9_PHATR1.230e-4345.05Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A7S1JUJ9_9ALVE1.270e-4247.26Hypothetical protein (Fragment) n=1 Tax=Vitrella b... [more]
A0A1Z5K8Z3_FISSO2.460e-4244.06EngB-type G domain-containing protein n=1 Tax=Fist... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig84contigS-ischiensis_contig84:67236..73789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score294.7
Seed ortholog evalue4.5e-77
Seed eggNOG ortholog2880.D8LDH7
KEGG koko:K03978
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0017076,GO:0019001,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0097159,GO:0097367,GO:1901265,GO:1901363
EggNOG free text desc.GTP binding
EggNOG OGsCOG0218@1,KOG2486@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size2330
Cds size801
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig84.20040.1prot_S-ischiensis_contig84.20040.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig84 67273..72297 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817334.039929-UTR-S-ischiensis_contig84:67235..672721622817334.039929-UTR-S-ischiensis_contig84:67235..67272Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 67236..67272 +
1695741035.1507852-UTR-S-ischiensis_contig84:67235..672721695741035.1507852-UTR-S-ischiensis_contig84:67235..67272Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 67236..67272 +
1622817334.1030638-UTR-S-ischiensis_contig84:72297..737891622817334.1030638-UTR-S-ischiensis_contig84:72297..73789Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 72298..73789 +
1695741035.2161381-UTR-S-ischiensis_contig84:72297..737891695741035.2161381-UTR-S-ischiensis_contig84:72297..73789Schizocladia ischiensis KU_0333UTRS-ischiensis_contig84 72298..73789 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817334.0515819-CDS-S-ischiensis_contig84:67272..675091622817334.0515819-CDS-S-ischiensis_contig84:67272..67509Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 67273..67509 +
1695741035.1689456-CDS-S-ischiensis_contig84:67272..675091695741035.1689456-CDS-S-ischiensis_contig84:67272..67509Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 67273..67509 +
1622817334.0638733-CDS-S-ischiensis_contig84:69192..694231622817334.0638733-CDS-S-ischiensis_contig84:69192..69423Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 69193..69423 +
1695741035.1810656-CDS-S-ischiensis_contig84:69192..694231695741035.1810656-CDS-S-ischiensis_contig84:69192..69423Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 69193..69423 +
1622817334.0782092-CDS-S-ischiensis_contig84:69776..699321622817334.0782092-CDS-S-ischiensis_contig84:69776..69932Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 69777..69932 +
1695741035.1935856-CDS-S-ischiensis_contig84:69776..699321695741035.1935856-CDS-S-ischiensis_contig84:69776..69932Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 69777..69932 +
1622817334.0917158-CDS-S-ischiensis_contig84:72120..722971622817334.0917158-CDS-S-ischiensis_contig84:72120..72297Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 72121..72297 +
1695741035.2052076-CDS-S-ischiensis_contig84:72120..722971695741035.2052076-CDS-S-ischiensis_contig84:72120..72297Schizocladia ischiensis KU_0333CDSS-ischiensis_contig84 72121..72297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig84.20040.1

>prot_S-ischiensis_contig84.20040.1 ID=prot_S-ischiensis_contig84.20040.1|Name=mRNA_S-ischiensis_contig84.20040.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=267bp
MEERRSRKKAARRDRLAARAAGTPGHTPRAGSPLTAKKAARQKDPFASER
PVTSKFNVGDIANVEFVGSYVEDSTAWPKTMLPEIAFLGRSNVGKSSMLN
CLFGESVAKVSKTPGRTRQINLFKAQNAKGRDVCWFADLPGYGYAKMSKD
TQRSIETFLEKYLAMRSNLKLLVLLVDSRREPLTSDAGIVSFVESSDVPF
KLVMVATKVDKLNMLEAATNIRRLREAFELPPGLPIEFSSVTGRGKKDLW
RYIREACRSNWDQEGD*
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mRNA from alignment at S-ischiensis_contig84:67236..73789+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig84.20040.1 ID=mRNA_S-ischiensis_contig84.20040.1|Name=mRNA_S-ischiensis_contig84.20040.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6554bp|location=Sequence derived from alignment at S-ischiensis_contig84:67236..73789+ (Schizocladia ischiensis KU_0333)
CAAAGAAATTCGCAAGGCGGCGAAGGCATTCGGGAAGATGGAGGAGAGGC
GGTCCAGGAAGAAGGCGGCGAGACGCGATAGGCTAGCCGCGCGGGCCGCG
GGCACTCCTGGCCACACCCCACGCGCCGGCTCGCCTCTCACAGCTAAGAA
GGCCGCGCGGCAGAAAGACCCTTTCGCCAGCGAGCGGCCGGTTACGTCCA
AGTTCAACGTTGGTGATATTGCGAACGTCGAGTTTGTGGGGAGCTACGTG
GAGGACAGCACGGCGTGGCCCAAGGTGCAGTTGCACTTAGAGGTTAATGA
GGGCCTAATTGGCCATAAATTTTAGGTGTAATTGCCCCTAATCACCTCTA
ATTAAGGGCCTATTGTGGGGAGCTACGTGGAGGACAGCACGGCATGGCCC
AAGGTGAAGTTGCACACAAGGTTGGCACTTAGAGTTTAGTTAGGGCCCAA
CTGGCCATAAATTTTAGGTCTAATTGCCCCTAATCACCTCTAGCTAAGGG
CCTATTGTGGGGAGCTACGTGGAGGACAGCACGGCATGGCCCAAGGTGAA
GTTGCACACAGGGTTGGCACTTCGAGGTTAATAAGGCCCAAATTAGCCTT
CATTTTGCGTCTAATTCCACCTAGTTTGTGGGGAGCTACGTGGAGGACAG
CACGGCGTGGCCCAAGGTGAAGTTGCACTTAGAGGTTAATTAGGGCCTAA
TTAGCCTTCATTTTAGGTGTAATTATCCCTAATAATCTGTAACTAAGGGC
CGTCGAGTTTGTGGGGAGCTATGTGGAGGACAGCACGGCATGGCCCAAGG
TGAAGTTGCACACAGGGTTGGCACTTACTGTAGAGGTTAGCTAGGGCCTA
CTTAGCCTTCGTTTTAGGTCTAATTACCCCTAGTTACAATGTACCTCTAA
CTAAGGGCCTAAAAGGGCACCACTTAGAGGTTAAGTGCCAACCCTGGTGC
AACAGGACGCTTGTTGTGGTTCCGGACGACTGTGCCACCAGTTGTCTTCA
GGTGCCGGAGTTTCCTTTCGCCCCGCCGATTATGTTTGCATTGGCCGGAG
CAGCGTTTTTACACAGTTACCAAATCGTTCCACGTGCCTCGCTCGCTTTT
TTTTTGTTGCCGGCCCCAACCCTGACCGCGACAGCCTCGCCCCCCCTACC
CATCCATTCGCCCGGACACTGTTTTCCCGGGGACTGAGCGGCCTGCAGCG
CTTGTCCGAGTAGATACTGCTTCGAAGTTTGTACAGTGCTTGGAAGTATG
AAACATGTACGATCACGTAGCTTACAGAAAGCTTCCGGTCAGGCAAGACG
TAGAAGTCACGTGCGCCGACCATGTGACGTGGTGTGGTGCGATGCTATGC
TATATGATGTGATGAGATGAGATGCGATCTCGTGCGTACACCCTCCAACT
CGCGTGACGTGATGTGGTGCAATGCTGCACTATGCGATGTGACGAGGTGT
GATGTCGTGTGTGCACCCTTTCAACTCGCTGTAAGTAGTTTCAAACCGCA
TCGCATCACATCAAACCAGAGTCATATTCTTCCACCGGCAAGTCGCGAGT
GCCACCGGGCGCCCCTTGATGGCGAGTCTTAAAACATGTTAAATATATAT
ATATATATAATGCCGCAGATACGCAAACAAGCAAGAGGTGGTAGGCCAAC
CAAACTACGGTACCAGGCACGCCATGGGGCGAATGGGCAAGATTTTTGCT
TACAATATACAGTACTCTACCTCCCCTCATCCGCCAACCTAAACGTATTT
CGACATCTGAATCATCCCCCCGCACCCACCTCGCCCGCCCCTCTCCCCCC
CTCCCAGACCATGCTCCCAGAGATTGCTTTCCTGGGGCGGTCCAACGTGG
GCAAGAGCAGCATGCTTCAATTGTCCAACCTAAACGTAATTCGGCATGCA
TTAGTGTGAATCTTCCCCCCACACCCACCTCGCCCGCCCCCCTCCCCCCC
TCCCCAGACCATGCTTCCGGAGATTGCTTTCCTGGGGCGGTCCAACGTGG
GCAAGAGCAGCATGCTCAACTGCCTGTTTGGGGAGTCGGTGGCCAAGGTG
TCCAAGACACCCGGGCGCACCCGCCAAATTAACTTGTTCAAGGCGCAGAA
CGCCAAGGGCAGGGACGTGTGCTGGTTCGCGGACCTCCCCGGGTACGGCT
ACGCGAAGATGAGCAAGGACACGCAGAGGAGCATTGAGGTGCGTGCGTGC
GTGCGTGCGTGTGTTTTTTTGTGTGTGGCTACGCGGCGATGAGCAAGGAC
ACGCAGAGGAGCATTGAGGTGCGTGCGTAAGTGCGTGGATGTGTGCGCGC
GCGCATGTGTGTGTGTGCGTGTGTGTGTGCACGCGTGCATGTGCGTGTTG
TGTCTTGTGTGTGCGCATGTGCGTGTGTGTGTATGTCTCCCCCCCCCCCC
CCTCTCTCCCTCCCTCCCCCTCTCTCTCTCACACTCCCTCCGCCTCTCTC
TCTCTCTCTTCCCCCTCTCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCT
CCCTCCCCGTCCCCCTCTGCCCACCTCCCTCGCGCCGCCAGACCTTCCTG
GAGAAATACCTGGCCATGCGATCCAACCTCAAGCTGCTGGTTCTATTGGT
GGACTCGCGGAGAGAGCCGCTCACCTCGGACGCCGGGATTGTGTCCTTTG
TGGAGAGCTCCGACGTGCCCTTCAAGCTGGTGATGGTCGCCACCAAGGTT
CGTTCACTTCAGTATTAAATGGTCTCGGGACTACGGCAAGCACTACATGA
GTACGTATATTAGAGGGATTTTGACCTTTGCGGAAGCTCCGACGTGCCCT
TCAAGCTGGTCATGGTCGCCACCAGGTGCGTGCACTTCACTATTTTCTAT
TGTGAAATGTGCTTACATATATATGTATATATCAGCTAGTAACGCTGGGC
GTGTGGAAAGCTCCAATCTGCCGTTCAAGCTGGTCATGGTGGCCACCAAG
GTGCGTGCACTTCACTATTAACTATTATGAAATGTGCGTACATATATATA
TACGAAGTATATATAAACTAGTAGCGCTGGGCGTGTGGAAAGCTCCGATG
TGCCCTTCAAGCTGGTCATGGTGGCCACCAAGGTGCCTTCACCTAACCCG
TTTACCCCTGCTAAATTGGACTTAATATATATACTTCGAAGTATGTACTC
ACGTGGTGCTTGCCGTAGTCCTGAGACCTTTGACCACGCGCCGCGGACCT
GCAAGTACTCGAGTACACACAACCCTATGGCTATACGGACCCCAGGGGTA
AAAGGGTTTGCTACCAGCTATTAGCGCTGGGCGGAGAGGCGTGTGCTTCG
TTGTGTTGTGAACCCTTTTGAGGAGGAGGGGTGAGCTCCATTGTTGTGTT
TGTCGCTTTGAGAGTTTCGAGTTTTTTTTCTTTTTTTTTTTTGCTGCAGT
AGGGCAGTAGTGTGCGCAAGTACTGTACACCGAGTGGCAACACCCCTACC
CCCTTCCCTTTTATGAGTTTTTTCTCTTCTGCTTGCTTTCCGTTTTGTTT
TCTTCCCCTTTTTCCCCCTCCTTCCCCATCCCTTTTTTATTTTTTTACCC
TACGCCCCCCACCTGCCTGGTTCCTTTTTCCTTGATGTGATAATCACTAA
TATAATAACATTAAATTCCTAAATGAATCAACTGAAATTACGCGAACAGT
CAATCGCACACACGTGCGATTTTACCTCGTTACAATTTATATGGGTTACT
GTACACCGACATACTATGTATACTTGCTCGGGAGTAGTTCGACAAGGATC
CTACTGTACTTCGGTTGTTCGGACGGGGCCCGGAACTCACATACCATCGC
AATTATAAAGAAGGATCCCACCCTAACTACAGCCAGGCAGTAGTGTAGGG
TATGTACTGTAAACCGTCGTACTACTGTACAGTAGCTCTATATGCACTCA
CTTGAGTAGCTAGACAATGGTCACACTAGGCATGCTTCCACGGACTCTCT
CGTCGTACATACGATACGCCGCTTACTTGAGAAGTTGGACAACGGTCACA
CTACTGCAAGTATGATTCCATGGACGCTCGTGCCGTCAATACGATACGCC
GCTGCGCAGGTGAACAAGTACTTCTCTACAGTAGTACTTGAGTAGCGAGA
CAACGGTCACACACTAAGTAAACATGCTTCCACACGTGCTTGTCGTCGAT
AGGTGTACAAGCTCAACATGCTTGAGAGGCAATATGTACTTCTGTAGCAC
TTACTTGAGTAGTTAGACAATGGTCACACGAGGTATGCTCCCACAGACGT
TCTTGTTGTCGATAGGATACGCCGCTTTCTTGAGTAGTTCGACAATGGTC
ACAGTAGGTATGCTTCCATGGACGTGCTTGTCATCAACACGATACGCCGC
TTTCTTGAGTTTTTGGACAATGGTCACACTAGGTATACCCGAAGTTTCGA
CTTAGGGCTATCGGCATTGCACGCACGGCTATGTCGCAAGACAAGCCAAT
GAGTACATATATATATACTAGGTATGCTTCAACGGACGTGCTTGTCGTCG
ATACGATGCGCCGCTTTCTTGAGTAGCTGGACAATGGTCACACTTAGTAT
GCTTCCACGGACGTTCTTGTCATCGATAGGTGGACAAGCTCAACATGGTG
GAGGTCGCCACCAACATCCGGCGCCTGCGGGCGTACAATATGTACTTCTG
TAGTACTCATACTTCAAGTACTTACTTGAGTAGCTAGACAACGGTCACAC
ACTAAGTGTGCTTCCACGGACGTTCTTGTCGTCGATACGATACACCGCTG
ATCACCTAGACGAGAGCACTCAACTCTTAAATGGGACAACTGTATACTAA
TACGAGAACACTCAATCTGACACATGTGTGTTTGTACACATCGTTGCTAG
AAGTACAATCTATATGAATCAACGCCGCTGCGCAGGTGGACAAGCTCAAC
ATGCTGGAGGCCGCCACCAACATCCGGCGGCTGCGAGAGGCCTTCGAGCT
ACCCCCGGGGCTTCCCATCGAATTCTCGTCGGTGACGGGGAGGGGGAAGA
AGGACCTGTGGAGGTACATCAGGGAGGCGTGCAGGTCCAATTGGGACCAA
GAAGGCGATTGACCATCGACCCTTCAGAAGAAGGAACTGTGGAGATACAT
CACGGAGGCATGCAGGTCCAATTGGGACCAAGAAGACGATTGATGGTCGA
CCCTTTATGGACGGCTCGGATGGGACACATGCACTTGAAGTATGATTACA
AGTACCTTAATCGTCGGAGAGATTTTGCCCCCACGGGCCAATTTTCGGGG
GAATATTTCTAGCCGGGAAGGTTCTGCATTGTCCCGAAAGCCCCCGAAAA
AAGTTCTCCCAGATCCGGAGGGAGATTCTCAGAGTTTTTCCGGCGCGAAT
CCGACCAGTATTCGGCGAGAAACGTTCTCCCGAAAATTGGCATGGGGGGG
CAAGATGTCTCCGACGACTACGGCATGATTGCAAGTGCCGCGAGACAAGG
TGCGCAAAAGGCGGGGGAATGACGGGCTTCCGCGTTGGGGCCTGGAACTC
GCGAAAGTCGGATCACCTCTGTTTTCGACTCGCTTCTTTTCTTCCTACAC
AAAAGACAAGAACGCCAGTGGGGTGATGCGATGTGCCATGGGTGTGGTTT
TCATGGTGGAAAATTGGCGTGAAGTTGGGGACCACGCGCGATGCAATGTC
CAGTGAAGGAGCCCATTCCCTTGCCTGTGACGGAGCGTATGCACCCAGAG
GGCTCGAAGTACATCATAGTGTTTGAGCGTGTGTGCCTGCAGAGCTTTGC
TGGGCACACGGTGGTCATCGAACCCCCTTCTGCGCCCCAGAATGATAAGG
CCACGTCTAGGCCAATTTTGCAATGACCCCGTTCTGAATATAATCGGTTC
TGAATTCACAGGATATACTGTTGTTGGCAGGCTCGGCCCGGTGTCACGCT
TGCCCCGGGACACTGGCACTTTTGAGCTCTGAGCCTGAGGGTCTGTGTCT
TATCACGCAACCGCTAGCGCACAGCCGCCAAGTTGGGGGTTCCCATGAAA
AGAAGGGCTTCTGGTGACTTCCCCACCTTAACTTAGGTTGTTGGGACGGG
GCCAGGAGCTCGCATACCATCACAATAGTTCAAAAATGACTGGGGTGTTA
ACAGGAACAACACGGGGCGAGGTGCGGGCCACGCCACTAGATACCTCAGC
GGTGGCCCTTCCAAATACTTCGAAGTAGCTAGTGACTGGGGTAAGGCAAT
TGTATAGTATTGTTGAAATGCGCGTGGACATCCAACAACATTTCGGCGCG
ACAGTGTCACATGTACGCTGGCGTTGACATGGACGGCCCCCAAACTCAGC
CTGAGGGCCACTGGCATCCTCCTCGGGCTGGGTCGGGTGGCAGCCTGAGG
CTCCGAGTCGCTGCTCAGGCTGCCAAGTTCCGCACGGTCAGAGTCACTGG
CAGTGACTGAGTCGAGCGCTGCTTGCGGCCGCCACAACGTTACAATCCTT
AGCCCAATGGCATGCATTTTCCTACTTCGTATGAAGTATATGAGGCTCCA
GCCGGGTCCGGTGGCAGTCTGAGGCTCCGAGTCGCAGCTGCTCAGGCTAC
CAAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig84:67236..73789+

>mRNA_S-ischiensis_contig84.20040.1 ID=mRNA_S-ischiensis_contig84.20040.1|Name=mRNA_S-ischiensis_contig84.20040.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1602bp|location=Sequence derived from alignment at S-ischiensis_contig84:67236..73789+ (Schizocladia ischiensis KU_0333)
ATGGAGGAGAGGCGGTCCAGGAAGAAGGCGGCGAGACGCGATAGGCTAGC
CGCGCGGGCCGCGGGCACTCCTGGCCACACCCCACGCGCCGGCTCGCCTC
TCACAGCTAAGAAGGCCGCGCGGCAGAAAGACCCTTTCGCCAGCGAGCGG
CCGGTTACGTCCAAGTTCAACGTTGGTGATATTGCGAACGTCGAGTTTGT
GGGGAGCTACGTGGAGGACAGCACGGCGTGGCCCAAGATGGAGGAGAGGC
GGTCCAGGAAGAAGGCGGCGAGACGCGATAGGCTAGCCGCGCGGGCCGCG
GGCACTCCTGGCCACACCCCACGCGCCGGCTCGCCTCTCACAGCTAAGAA
GGCCGCGCGGCAGAAAGACCCTTTCGCCAGCGAGCGGCCGGTTACGTCCA
AGTTCAACGTTGGTGATATTGCGAACGTCGAGTTTGTGGGGAGCTACGTG
GAGGACAGCACGGCGTGGCCCAAGACCATGCTTCCGGAGATTGCTTTCCT
GGGGCGGTCCAACGTGGGCAAGAGCAGCATGCTCAACTGCCTGTTTGGGG
AGTCGGTGGCCAAGGTGTCCAAGACACCCGGGCGCACCCGCCAAATTAAC
TTGTTCAAGGCGCAGAACGCCAAGGGCAGGGACGTGTGCTGGTTCGCGGA
CCTCCCCGGGTACGGCTACGCGAAGATGAGCAAGGACACGCAGAGGAGCA
TTGAGACCATGCTTCCGGAGATTGCTTTCCTGGGGCGGTCCAACGTGGGC
AAGAGCAGCATGCTCAACTGCCTGTTTGGGGAGTCGGTGGCCAAGGTGTC
CAAGACACCCGGGCGCACCCGCCAAATTAACTTGTTCAAGGCGCAGAACG
CCAAGGGCAGGGACGTGTGCTGGTTCGCGGACCTCCCCGGGTACGGCTAC
GCGAAGATGAGCAAGGACACGCAGAGGAGCATTGAGACCTTCCTGGAGAA
ATACCTGGCCATGCGATCCAACCTCAAGCTGCTGGTTCTATTGGTGGACT
CGCGGAGAGAGCCGCTCACCTCGGACGCCGGGATTGTGTCCTTTGTGGAG
AGCTCCGACGTGCCCTTCAAGCTGGTGATGGTCGCCACCAAGACCTTCCT
GGAGAAATACCTGGCCATGCGATCCAACCTCAAGCTGCTGGTTCTATTGG
TGGACTCGCGGAGAGAGCCGCTCACCTCGGACGCCGGGATTGTGTCCTTT
GTGGAGAGCTCCGACGTGCCCTTCAAGCTGGTGATGGTCGCCACCAAGGT
GGACAAGCTCAACATGCTGGAGGCCGCCACCAACATCCGGCGGCTGCGAG
AGGCCTTCGAGCTACCCCCGGGGCTTCCCATCGAATTCTCGTCGGTGACG
GGGAGGGGGAAGAAGGACCTGTGGAGGTACATCAGGGAGGCGTGCAGGTC
CAATTGGGACCAAGAAGGCGATTGAGTGGACAAGCTCAACATGCTGGAGG
CCGCCACCAACATCCGGCGGCTGCGAGAGGCCTTCGAGCTACCCCCGGGG
CTTCCCATCGAATTCTCGTCGGTGACGGGGAGGGGGAAGAAGGACCTGTG
GAGGTACATCAGGGAGGCGTGCAGGTCCAATTGGGACCAAGAAGGCGATT
GA
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