mRNA_S-ischiensis_contig83.20036.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.20036.1
Unique NamemRNA_S-ischiensis_contig83.20036.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.20036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:626125..626887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size763
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.20036.1prot_S-ischiensis_contig83.20036.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 626146..626580 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817326.141865-UTR-S-ischiensis_contig83:626124..6261451622817326.141865-UTR-S-ischiensis_contig83:626124..626145Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 626125..626145 +
1695741028.3367734-UTR-S-ischiensis_contig83:626124..6261451695741028.3367734-UTR-S-ischiensis_contig83:626124..626145Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 626125..626145 +
1622817326.1647737-UTR-S-ischiensis_contig83:626580..6268871622817326.1647737-UTR-S-ischiensis_contig83:626580..626887Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 626581..626887 +
1695741028.3624868-UTR-S-ischiensis_contig83:626580..6268871695741028.3624868-UTR-S-ischiensis_contig83:626580..626887Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 626581..626887 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817326.1528976-CDS-S-ischiensis_contig83:626145..6265801622817326.1528976-CDS-S-ischiensis_contig83:626145..626580Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 626146..626580 +
1695741028.347439-CDS-S-ischiensis_contig83:626145..6265801695741028.347439-CDS-S-ischiensis_contig83:626145..626580Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 626146..626580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.20036.1

>prot_S-ischiensis_contig83.20036.1 ID=prot_S-ischiensis_contig83.20036.1|Name=mRNA_S-ischiensis_contig83.20036.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=145bp
MSTPPPADTKWAKVRFLHFGTMYSSTVVSIYSVRTVVDGNSFLNWNDAPP
GILCSPKVADHERVLGSTPPGHAGNGLGHSFVQLLVLMEEPFNSRLQYMH
RQFLSIFSLPSPILKIRTNSSRIISCGRRQMEVANGGKLSQCVC*
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mRNA from alignment at S-ischiensis_contig83:626125..626887+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.20036.1 ID=mRNA_S-ischiensis_contig83.20036.1|Name=mRNA_S-ischiensis_contig83.20036.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=763bp|location=Sequence derived from alignment at S-ischiensis_contig83:626125..626887+ (Schizocladia ischiensis KU_0333)
ATCTCATCGCCGCATCACCACATGAGCACACCTCCACCAGCAGATACGAA
ATGGGCTAAGGTCCGTTTTCTACACTTTGGCACTATGTACAGTAGTACAG
TAGTGTCTATTTACAGTGTCAGAACCGTTGTTGACGGCAATTCATTCCTA
AACTGGAATGACGCCCCACCGGGGATCCTGTGCTCCCCGAAGGTAGCTGA
TCACGAGCGTGTTCTGGGAAGTACACCACCTGGCCACGCTGGGAACGGTC
TGGGTCATTCGTTCGTTCAGCTGCTTGTGCTCATGGAGGAGCCATTCAAC
AGCCGTCTACAGTACATGCATCGTCAGTTCTTGTCTATTTTCTCCTTGCC
GTCCCCGATATTGAAAATCCGGACCAACTCGTCTCGTATAATCTCTTGTG
GCAGGCGGCAGATGGAAGTCGCAAACGGCGGCAAGCTGTCACAGTGTGTT
TGTTGACCGCTCCTTTAGGACGGGCAGGGGAGCTCATGCACAGGCTCGCA
CTCGGGCCCGTTATGGTGCTGCCGGTCAGACTGCATCTTCTCCTCCTGCG
GCTTGCTGTGGTGCCCCTTGAAAGTACGCCACGGACACAGCAAAACACGG
CGACGAGTCGCCGACGACCAGCCCAGCCTGACTAGTATGAGATCGCCACG
ATGATCGATGATCGGATCCGACCGTTGCGCCCATATCTCCGTCCCAGGTG
TTCACAGTCACGTTGGAGTCCTTGACCGTGTCACAACTTGTGACTCATCA
CAAGGGTCACCGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:626125..626887+

>mRNA_S-ischiensis_contig83.20036.1 ID=mRNA_S-ischiensis_contig83.20036.1|Name=mRNA_S-ischiensis_contig83.20036.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=870bp|location=Sequence derived from alignment at S-ischiensis_contig83:626125..626887+ (Schizocladia ischiensis KU_0333)
ATGAGCACACCTCCACCAGCAGATACGAAATGGGCTAAGGTCCGTTTTCT
ACACTTTGGCACTATGTACAGTAGTACAGTAGTGTCTATTTACAGTGTCA
GAACCGTTGTTGACGGCAATTCATTCCTAAACTGGAATGACGCCCCACCG
GGGATCCTGTGCTCCCCGAAGGTAGCTGATCACGAGCGTGTTCTGGGAAG
TACACCACCTGGCCACGCTGGGAACGGTCTGGGTCATTCGTTCGTTCAGC
TGCTTGTGCTCATGGAGGAGCCATTCAACAGCCGTCTACAGTACATGCAT
CGTCAGTTCTTGTCTATTTTCTCCTTGCCGTCCCCGATATTGAAAATCCG
GACCAACTCGTCTCGTATAATCTCTTGTGGCAGGCGGCAGATGGAAGTCG
CAAACGGCGGCAAGCTGTCACAGTGTGTTTGTTGAATGAGCACACCTCCA
CCAGCAGATACGAAATGGGCTAAGGTCCGTTTTCTACACTTTGGCACTAT
GTACAGTAGTACAGTAGTGTCTATTTACAGTGTCAGAACCGTTGTTGACG
GCAATTCATTCCTAAACTGGAATGACGCCCCACCGGGGATCCTGTGCTCC
CCGAAGGTAGCTGATCACGAGCGTGTTCTGGGAAGTACACCACCTGGCCA
CGCTGGGAACGGTCTGGGTCATTCGTTCGTTCAGCTGCTTGTGCTCATGG
AGGAGCCATTCAACAGCCGTCTACAGTACATGCATCGTCAGTTCTTGTCT
ATTTTCTCCTTGCCGTCCCCGATATTGAAAATCCGGACCAACTCGTCTCG
TATAATCTCTTGTGGCAGGCGGCAGATGGAAGTCGCAAACGGCGGCAAGC
TGTCACAGTGTGTTTGTTGA
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