mRNA_S-ischiensis_contig83.20031.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig83.20031.1 vs. uniprot
Match: D7FJF4_ECTSI (Signal recognition particle receptor subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJF4_ECTSI) HSP 1 Score: 191 bits (484), Expect = 8.190e-53 Identity = 110/220 (50.00%), Postives = 143/220 (65.00%), Query Frame = -2
Query: 198 RRRTVVMVGPCGGGKTALCHRLCHGRD---VQTVTSMRKCQYTCRANGAGA--GSSGGDAGSSDPATALVDYPGHARLRAGLREELARSSAVVFVIDAADLSAQVQAGAELLYDVLTDPSLERSRGLLIACSKADVKAARPARVKTLFQRELDKLRATRGTLSAQGGXXXXXXXXXXXXALPLGRQGEPLDLDVDSPCEVSVAACS-ARTGDVAQVREFI 839
R+ V+ +GPCG GKTA+C+RL HG + V T TSM C+Y C + +G SS + +LVDYPGH RLR G+ EEL + VVF++D + L+AQV AGAELLYDVLTDPSLE +GL++A +K+D+K A+ +R KTL Q+ELDKLR TRG L QG A+ LGR G+P L+VDSPCEV VA CS A+ G + V +F+
Sbjct: 141 RKGVVLFLGPCGSGKTAMCYRLSHGGETGLVPTATSMEACRYPCSSGRLSELLARNGNGPSSSARSGSLVDYPGHERLRGGVGEELRGADRVVFMLDGSCLAAQVAAGAELLYDVLTDPSLEGCQGLMLALNKSDLKEAKASRAKTLLQKELDKLRGTRGMLGTQG------EEDDMPVAMALGRPGQPFSLEVDSPCEVVVAGCSVAKEGGLDSVVDFV 354
BLAST of mRNA_S-ischiensis_contig83.20031.1 vs. uniprot
Match: A0A835YTM3_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTM3_9STRA) HSP 1 Score: 152 bits (384), Expect = 2.090e-40 Identity = 80/161 (49.69%), Postives = 108/161 (67.08%), Query Frame = -2
Query: 192 GSSDPATALVDYPGHARLRAGLREELARSSAVVFVIDAADLSAQVQAGAELLYDVLTDPSLERSRGLLIACSKADVKAARPARVKTLFQRELDKLRATRGTLSAQGGXXXXXXXXXXXXALPLGRQGEPLDLDVDSPCEVSVAACSARTGDVAQVREFILG 674
GSS + + D+PGH RLR GLR ELA S+AV+F++D DLS+QV+ G E+LYD+LTD S+ER +GL I CSKAD+K A+P RV+ +EL++LR TR ++ QG +PLGRQG+PLDL VD PC ++V CS + + VR+FI G
Sbjct: 19 GSSKGSVTVTDFPGHERLRGGLRGELATSTAVIFMLDGTDLSSQVRLGGEMLYDILTDSSIERCKGLAIGCSKADLKVAKPDRVRAALTKELEQLRTTRWSIGMQG----EEDTGRPNSFIPLGRQGQPLDLVVDCPCPLTVFTCSVKGEGLNAVRDFIAG 175
BLAST of mRNA_S-ischiensis_contig83.20031.1 vs. uniprot
Match: W7U264_9STRA (Signal recognition particle receptor subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U264_9STRA) HSP 1 Score: 124 bits (311), Expect = 2.890e-28 Identity = 111/326 (34.05%), Postives = 159/326 (48.77%), Query Frame = -2
Query: 201 PPLPASPPPSISL-----TWLLATLVDARAALWPHLPVDVRDALASLDVAALDRAGIPEASAV-----LLLAVPATLLVVWAATAFAAALIRGARALGGXXXXXXGRRRT--VVMVGPCGGGKTALCHRLCHGRDVQTVTSMRKCQYTCRANGAGAGSSGGDAGSSDPATALVDYPGHARLRAGLREEL---ARSSAVVFVIDAADLSA-QVQAGAELLYDVLTDPSLERSRGLLIACSKADVKAAR-PARVKTLFQRELDKLRATRGTLSAQGGXXXXXXXXXXXXALPLGRQGEPLDLDVDSPCEVSVAACSARTGDVAQVREF 1127
PP ASP + S+ T L L + HLP + ++D G+P + + LLL + +L V A RG + L G GR R VV++GPCG GKTAL H+L + +TVTSM + + + D LVD+PGH RLR G +++ + + V+FV+DAAD S +V+ AE LYD+LT +++ LL+AC K+D+ A+ PAR+K L EL++LR T QGG LPLGR PL+LDVD+P E++ A+ + VAQ +F
Sbjct: 20 PPATASPSSTSSMLTPLITTFLGVLARVEEKVVEHLPPQAQKKFHAVDAWGSTALGLPHSGIIITCLLLLLVLGLSLYFVGIGRA------RGHKPLPGGKQ---GRARPSHVVLLGPCGAGKTALYHQLLYNTVPETVTSMVESEGILK----------------DKDIRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADFSTHKVREAAEFLYDILTHAAMDDGPPLLVACHKSDLPGAKAPARIKALLTSELERLRKT------QGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTN-----VAQQTQF 309
BLAST of mRNA_S-ischiensis_contig83.20031.1 vs. uniprot
Match: A0A024TLZ7_9STRA (Signal recognition particle receptor subunit beta n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLZ7_9STRA) HSP 1 Score: 120 bits (300), Expect = 1.390e-27 Identity = 82/222 (36.94%), Postives = 126/222 (56.76%), Query Frame = -2
Query: 195 GRRRTVVMVGPCGGGKTALCHRLCHGRD-VQTVTSMRKCQYTCRANGAGAGSSGGDAGSSDPATALVDYPGHARLRAGLREELARSSAVVFVIDAADL--SAQVQAGAELLYDVLTDPSL-ERSRGLLIACSKADVK-AARPARVKTLFQRELDKLRATRGTLSAQGGXXXXXXXXXXXXALPLGRQGEPLDLDVDSPCEVSVAACSARTGD-VAQVREFIL 842
G+R ++++GPCGGGKTAL HRL G V TVTSM++ T A + +++D+PGH RLR+ + + + +VFV+DA + +AQV+ AE LYD+ P + + LL+ACSKADV AA P+ +++L + EL +L++TR +L A ++PLGR+ P DVD+PCEV + S + + +A + +FIL
Sbjct: 40 GKRDVILLLGPCGGGKTALFHRLRDGPSKVDTVTSMKETLETFPLFDEEAAT-----------VSVLDFPGHERLRSQVSQFYPIAKKLVFVVDATTVGDAAQVRKAAEFLYDIFVHPKVHDNGIPLLVACSKADVATAATPSHIQSLLETELSQLKSTRASLEAHD----------DDESIPLGRENVPFAFDVDAPCEVVFESYSIHSAEAIAPLLDFIL 240
BLAST of mRNA_S-ischiensis_contig83.20031.1 vs. uniprot
Match: A0A6G0XMT9_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XMT9_9STRA) HSP 1 Score: 120 bits (300), Expect = 1.390e-27 Identity = 85/225 (37.78%), Postives = 124/225 (55.11%), Query Frame = -2
Query: 195 GRRRTVVMVGPCGGGKTALCHRLCHGR-DVQTVTSMRKCQYTCRANGAGAGSSGGDAGSSDPATA---LVDYPGHARLRAGLREELARSSAVVFVIDAADLS--AQVQAGAELLYDVLTDPSL-ERSRGLLIACSKAD-VKAARPARVKTLFQRELDKLRATRGTLSAQGGXXXXXXXXXXXXALPLGRQGEPLDLDVDSPCEVSVAACSARTGD-VAQVREFIL 842
G+R ++++GPCG GKTAL HRL G V+TVTSM++ T + D TA ++D+PGH RLR+ + + +VF++DA +S QV+ AE L+D+ T P L + +LIACSKAD AA P+R++ L + EL +L+ TR +L Q ++PLGR+ P DVD+PCEV + S T + VA + +FIL
Sbjct: 40 GKRDVILLLGPCGSGKTALFHRLRDGAVSVETVTSMKETMETFPLH--------------DEETANVSVLDFPGHERLRSQAPQFYPIAKKIVFIVDATTVSDPLQVRKAAEFLFDIFTHPKLNDNGIPVLIACSKADQATAAAPSRIQLLLEAELTQLKGTRASLDTQD----------DDESIPLGRENVPFAFDVDAPCEVVFESYSIHTPNGVAPLLDFIL 240
BLAST of mRNA_S-ischiensis_contig83.20031.1 vs. uniprot
Match: A0A485KDV8_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDV8_9STRA) HSP 1 Score: 117 bits (294), Expect = 9.930e-27 Identity = 83/223 (37.22%), Postives = 129/223 (57.85%), Query Frame = -2
Query: 195 GRRRTVVMVGPCGGGKTALCHRLCHGRD--VQTVTSMRKCQYTCRANGAGAGSSGGDAGSSDPATALVDYPGHARLRAGLREELARSSAVVFVIDAADLS--AQVQAGAELLYDVLTDPSL-ERSRGLLIACSKADVK-AARPARVKTLFQRELDKLRATRGTLSAQGGXXXXXXXXXXXXALPLGRQGEPLDLDVDSPCEVSVAACSARTGD-VAQVREFIL 842
G+R +++VGPCGGGKTAL HRL G ++TVTSM++ + D S++ +++D+PGH RLR+ + + + +VFV+D+ +S AQV+ AE L+DV T P L + + +LIACSK+D+ AA P R+++L + EL +L++TR +L A ++PLGR P DVD+PCEV S + + +A + +FIL
Sbjct: 40 GKRDVILLVGPCGGGKTALFHRLRDGPSPTLETVTSMKETLESFPLF---------DEDSAN--VSVLDFPGHERLRSQVSQFYPIAKKLVFVVDSTTVSDPAQVRKAAEFLFDVFTHPKLNDTAIPVLIACSKSDLTTAAAPGRIQSLLEAELTQLKSTRASLEAHD----------DDESIPLGRDNVPFAFDVDAPCEVVFETYSIHSAEAIAPLLDFIL 241
BLAST of mRNA_S-ischiensis_contig83.20031.1 vs. uniprot
Match: A0A067D7V6_SAPPC (Signal recognition particle receptor subunit beta n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D7V6_SAPPC) HSP 1 Score: 111 bits (278), Expect = 1.710e-24 Identity = 76/220 (34.55%), Postives = 118/220 (53.64%), Query Frame = -2
Query: 222 GGXXXXXXGRRRTVVMVGPCGGGKTALCHRLCHG-RDVQTVTSMRKCQYTCRANGAGAGSSGGDAGSSDPATALVDYPGHARLRAGLREELARSSAVVFVIDA--ADLSAQVQAGAELLYDVLTDPSL-ERSRGLLIACSKAD-VKAARPARVKTLFQRELDKLRATRGTLSAQGGXXXXXXXXXXXXALPLGRQGEPLDLDVDSPCEVSVAACSARTGD 866
GG R V++VGPCG GKTAL HRL +G V+TVTSM++ T + ++ D+PGH R+R+ + + ++FV+DA A+ ++ ++ AE LYD+ T P + + ++IACSK D VKAA PA V++L + EL +L++TR +L A G ++PLGR + +D+PC+V+ S +T D
Sbjct: 32 GGGAGLGGSGRDVVLLVGPCGAGKTALFHRLRNGPTKVETVTSMKETMETFPLFD-----------EENATISICDFPGHERMRSTATQFYPIAKKIIFVVDATTANDASHIRKAAEFLYDIFTHPKINDAGVPVMIACSKTDDVKAATPATVQSLLETELTQLKSTRASLEAHG---------DDDESIPLGRDNALFEFAIDAPCDVTFEGYSIQTPD 231
BLAST of mRNA_S-ischiensis_contig83.20031.1 vs. uniprot
Match: A0A7S2DSR0_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DSR0_9STRA) HSP 1 Score: 109 bits (273), Expect = 3.310e-24 Identity = 72/205 (35.12%), Postives = 113/205 (55.12%), Query Frame = -2
Query: 222 VVMVGPCGGGKTALCHRLCHGRDVQTVTSMRKCQYTCRANGAGAGSSGGDAGSSDPATAL--VDYPGHARLRAGLREELARSSAVVFVIDAADLSAQVQAGAELLYDVLTDPSLERSRGLLIACSKADVKAARPA-RVKTLFQRELDKLRATRGTLSAQGGXXXXXXXXXXXXALPLGRQGEPLDLDVDSPCEVSVAACSARTGD 827
V+++GPCG GKT + +LC+G +TVTSM C GS D + +D+PGH R R L +L+ + VV V+D+++ S QV+ ++LL+ VLT P L S +L+ C+K DV+ ++ A RVK L Q+EL+ +R TRG++S +G + LG++G P D D P ++ A+ +A G+
Sbjct: 7 VLLIGPCGAGKTVIFQQLCYGGVAETVTSMSPAHSECTM------------GSKDAPKKINVIDFPGHMRQRPALLGQLSGAKGVVVVVDSSN-SKQVKEASDLLFSVLTAPLLPHSTSVLVFCNKMDVEGSKSADRVKVLLQKELETMRNTRGSMSQEG-------EDGSKGSRMLGQEGRPFRFDHDMP-NITFASGTALAGE 190
BLAST of mRNA_S-ischiensis_contig83.20031.1 vs. uniprot
Match: A0A1V9ZHQ0_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHQ0_9STRA) HSP 1 Score: 102 bits (254), Expect = 3.540e-21 Identity = 72/202 (35.64%), Postives = 110/202 (54.46%), Query Frame = -2
Query: 252 RRRTVVMVGPCGGGKTALCHRLCHG-RDVQTVTSMRKCQYTCRANGAGAGSSGGDAGSSDPATA-LVDYPGHARLRAGLREELARSSAVVFVIDA--ADLSAQVQAGAELLYDVLTDPSL-ERSRGLLIACSKAD-VKAARPARVKTLFQRELDKLRATRGTLSAQGGXXXXXXXXXXXXALPLGRQGEPLDLDVDSPCEVS 839
+R V++VGPCG GKTAL HRL G V TVTSM++ + AT + D+PGH R+R+ + + ++FV+D+ A+ + ++ AE LYD+ T P + + ++IACSK+D KAA A V++L + EL +L++TR +L A G ++PLGR P D+D+PCEV+
Sbjct: 41 KRDIVLLVGPCGAGKTALFHRLRDGPTKVTTVTSMKETMEKFPLF------------DEENATFNICDFPGHERMRSQAGQFYPIAKKIIFVVDSTTANDAGHIRKAAEFLYDIFTHPKVNDAGVPVMIACSKSDETKAATSATVRSLLESELTQLKSTRASLEAHG---------EDDESIPLGRDNAPFAFDIDAPCEVT 221
BLAST of mRNA_S-ischiensis_contig83.20031.1 vs. uniprot
Match: A0A2P6V4C1_9CHLO (Signal recognition particle receptor subunit beta n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V4C1_9CHLO) HSP 1 Score: 101 bits (251), Expect = 1.060e-20 Identity = 94/259 (36.29%), Postives = 130/259 (50.19%), Query Frame = -2
Query: 198 LAVPATLLVVWAATAFAAALIRGARALGGXXXXXXGRRRTVVMVGPCGGGKTALCHRLCHGRD-VQTVTSMRKCQYTCRANGAGAGSSGGDAGSSDPATA-LVDYPGHARLRAGLREELARSSAVVFVIDAADLSAQVQAGAELLYDVLTDPSLERSRG-LLIACSKADV--KAARPARVKTLFQRELDKLRATRGTLSAQGGXXXXXXXXXXXXALPLGRQGEPLDLDVDSPCE---VSVAACSA-RTGDVAQVREFI 947
+A+PA LL+ AA L + LGG GR TV++VGPC GGKT + H+L G + TV SM+ AG ++ AG+S P LVD PGH RLR L R++ VVFV+D+ D + AE L +VL+ P+L + R +L+AC+K D +A ++ ++ELD+LR+TRGTL G PLG GEP + + V+ A SA G VA+V FI
Sbjct: 1 MALPAVLLLALAAVLVVLVL---RKLLGGGTG---GRGSTVLLVGPCEGGKTTMWHQLLQGSTHLGTVASMQP--NVGEGPLAGEKAAAASAGASAPRPVQLVDIPGHPRLRGQLERHAERAAGVVFVLDSVDFMPKKTETAEQLLEVLSSPALAKRRAPVLLACNKQDAGSRAHTVEFIRKRLEKELDQLRSTRGTLGDVNGGSGGG-------GAPLGAPGEPFTFESHARAHGVRVTTAGVSAVDRGGVAEVEAFI 244 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.20031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig83.20031.1 >prot_S-ischiensis_contig83.20031.1 ID=prot_S-ischiensis_contig83.20031.1|Name=mRNA_S-ischiensis_contig83.20031.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=306bp MGRCSAQDKLPHLGHVARPGRARGDRNLARGVHIQVQGLALPAQGKGSTAback to top mRNA from alignment at S-ischiensis_contig83:607338..608741+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig83.20031.1 ID=mRNA_S-ischiensis_contig83.20031.1|Name=mRNA_S-ischiensis_contig83.20031.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1404bp|location=Sequence derived from alignment at S-ischiensis_contig83:607338..608741+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig83:607338..608741+ >mRNA_S-ischiensis_contig83.20031.1 ID=mRNA_S-ischiensis_contig83.20031.1|Name=mRNA_S-ischiensis_contig83.20031.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1836bp|location=Sequence derived from alignment at S-ischiensis_contig83:607338..608741+ (Schizocladia ischiensis KU_0333)back to top |