mRNA_S-ischiensis_contig83.20029.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.20029.1
Unique NamemRNA_S-ischiensis_contig83.20029.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.20029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:578937..579558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size622
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.20029.1prot_S-ischiensis_contig83.20029.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 578966..579280 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817325.9236364-UTR-S-ischiensis_contig83:578936..5789651622817325.9236364-UTR-S-ischiensis_contig83:578936..578965Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 578937..578965 +
1695741028.2129638-UTR-S-ischiensis_contig83:578936..5789651695741028.2129638-UTR-S-ischiensis_contig83:578936..578965Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 578937..578965 +
1622817325.9473572-UTR-S-ischiensis_contig83:579280..5795581622817325.9473572-UTR-S-ischiensis_contig83:579280..579558Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 579281..579558 +
1695741028.235524-UTR-S-ischiensis_contig83:579280..5795581695741028.235524-UTR-S-ischiensis_contig83:579280..579558Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 579281..579558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817325.9365196-CDS-S-ischiensis_contig83:578965..5792801622817325.9365196-CDS-S-ischiensis_contig83:578965..579280Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 578966..579280 +
1695741028.2254407-CDS-S-ischiensis_contig83:578965..5792801695741028.2254407-CDS-S-ischiensis_contig83:578965..579280Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 578966..579280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.20029.1

>prot_S-ischiensis_contig83.20029.1 ID=prot_S-ischiensis_contig83.20029.1|Name=mRNA_S-ischiensis_contig83.20029.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=105bp
MHGAIQAKVVRATKRWRLHPATGGWRCEPAWGMRGSRANTVERAGHRLVP
RYSHATDLSSLRTQPWLTWMSGCAFLLFGSRSMAATTCIVVVLKLVIRSK
SPST*
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mRNA from alignment at S-ischiensis_contig83:578937..579558+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.20029.1 ID=mRNA_S-ischiensis_contig83.20029.1|Name=mRNA_S-ischiensis_contig83.20029.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=622bp|location=Sequence derived from alignment at S-ischiensis_contig83:578937..579558+ (Schizocladia ischiensis KU_0333)
GCATCACTCCTTTCTGAGTAAAGTCTCTCATGCACGGGGCTATCCAGGCC
AAGGTCGTGCGGGCTACCAAAAGGTGGCGGTTGCACCCAGCCACCGGCGG
GTGGCGTTGCGAGCCAGCGTGGGGCATGCGGGGCTCGAGAGCGAACACGG
TGGAACGAGCTGGGCATAGGCTCGTCCCAAGGTACTCACACGCCACTGAC
CTCTCTTCCTTAAGGACCCAGCCGTGGTTGACCTGGATGAGCGGATGCGC
TTTCCTCTTGTTCGGCAGTAGATCCATGGCTGCTACGACCTGTATTGTGG
TCGTGCTGAAACTAGTGATCCGTTCCAAGTCACCTTCCACCTGATTCCAC
ACAGCGTTCACCCTCCTGAGTTGTGGTCTTGTTGAAACTAGTGACCCGTT
CCAGGTGATCTTCCACTTGATTCCGCACACGCGTTCACCCTTTGTGGTCG
TGTTGAAACTAGTGACCCGTTCCAAGCCACCTTCCATCTGATTCCACACA
CGCGTTCATCCGTTCCAAGTCACCTTCCACCTGATTCCACACACGCGTTC
AGGGCGAAGGCGTCCACACACGCGTTCATCCGTTCCAAGTCACCTTCCAC
CTGATTCCACACACGCGTTCAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:578937..579558+

>mRNA_S-ischiensis_contig83.20029.1 ID=mRNA_S-ischiensis_contig83.20029.1|Name=mRNA_S-ischiensis_contig83.20029.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=630bp|location=Sequence derived from alignment at S-ischiensis_contig83:578937..579558+ (Schizocladia ischiensis KU_0333)
ATGCACGGGGCTATCCAGGCCAAGGTCGTGCGGGCTACCAAAAGGTGGCG
GTTGCACCCAGCCACCGGCGGGTGGCGTTGCGAGCCAGCGTGGGGCATGC
GGGGCTCGAGAGCGAACACGGTGGAACGAGCTGGGCATAGGCTCGTCCCA
AGGTACTCACACGCCACTGACCTCTCTTCCTTAAGGACCCAGCCGTGGTT
GACCTGGATGAGCGGATGCGCTTTCCTCTTGTTCGGCAGTAGATCCATGG
CTGCTACGACCTGTATTGTGGTCGTGCTGAAACTAGTGATCCGTTCCAAG
TCACCTTCCACCTGAATGCACGGGGCTATCCAGGCCAAGGTCGTGCGGGC
TACCAAAAGGTGGCGGTTGCACCCAGCCACCGGCGGGTGGCGTTGCGAGC
CAGCGTGGGGCATGCGGGGCTCGAGAGCGAACACGGTGGAACGAGCTGGG
CATAGGCTCGTCCCAAGGTACTCACACGCCACTGACCTCTCTTCCTTAAG
GACCCAGCCGTGGTTGACCTGGATGAGCGGATGCGCTTTCCTCTTGTTCG
GCAGTAGATCCATGGCTGCTACGACCTGTATTGTGGTCGTGCTGAAACTA
GTGATCCGTTCCAAGTCACCTTCCACCTGA
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