mRNA_S-ischiensis_contig83.20026.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.20026.1
Unique NamemRNA_S-ischiensis_contig83.20026.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.20026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:565621..566596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size976
Cds size657
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817325.8798602-CDS-S-ischiensis_contig83:565620..5662771622817325.8798602-CDS-S-ischiensis_contig83:565620..566277Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 565621..566277 +
1695741028.1894574-CDS-S-ischiensis_contig83:565620..5662771695741028.1894574-CDS-S-ischiensis_contig83:565620..566277Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 565621..566277 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817325.891586-UTR-S-ischiensis_contig83:566277..5665961622817325.891586-UTR-S-ischiensis_contig83:566277..566596Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 566278..566596 +
1695741028.2006888-UTR-S-ischiensis_contig83:566277..5665961695741028.2006888-UTR-S-ischiensis_contig83:566277..566596Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 566278..566596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.20026.1prot_S-ischiensis_contig83.20026.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 565621..566277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.20026.1

>prot_S-ischiensis_contig83.20026.1 ID=prot_S-ischiensis_contig83.20026.1|Name=mRNA_S-ischiensis_contig83.20026.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=219bp
VGAGTVDRLLAAEQQEARRARGTSATAGAPTLPPPPPPPPPWELQGHDSD
AAATGYSAGPGAVAKTRRRPVAWGHILWGGPPIPPPPPPGPRPPPPPPPI
DATGPCAGTTGPPWPPGPKREGTPPRLTGTGAAGLGGGDSEGGRPGGPGP
KLAPSQVVQADANPGGGAGCRDEVSRGRCWHAVRHDVLGPGPRALWLLPT
PAQLSADSEARVRGYVLP*
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mRNA from alignment at S-ischiensis_contig83:565621..566596+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.20026.1 ID=mRNA_S-ischiensis_contig83.20026.1|Name=mRNA_S-ischiensis_contig83.20026.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=976bp|location=Sequence derived from alignment at S-ischiensis_contig83:565621..566596+ (Schizocladia ischiensis KU_0333)
GTGGGTGCAGGCACCGTGGACCGCCTGCTTGCCGCGGAGCAGCAGGAGGC
GCGGCGGGCCCGCGGAACGTCGGCGACGGCAGGGGCGCCAACCCTGCCGC
CGCCACCACCACCACCCCCGCCATGGGAGCTGCAGGGGCATGACAGCGAT
GCAGCGGCCACGGGATACTCGGCGGGGCCAGGCGCGGTGGCCAAAACGAG
GCGGAGGCCGGTCGCCTGGGGCCACATCTTGTGGGGCGGGCCGCCAATAC
CGCCGCCTCCCCCCCCCGGGCCCCGACCGCCGCCGCCGCCGCCGCCGATT
GATGCCACCGGGCCATGTGCTGGCACAACGGGGCCGCCATGGCCGCCCGG
GCCCAAACGCGAAGGGACGCCCCCGCGGCTGACCGGCACAGGCGCGGCGG
GACTTGGAGGTGGTGACTCGGAAGGGGGCCGGCCCGGGGGCCCGGGCCCC
AAGTTGGCACCAAGTCAGGTTGTGCAAGCAGATGCGAACCCGGGGGGGGG
TGCAGGGTGCCGTGACGAAGTTTCGCGCGGCAGGTGTTGGCATGCTGTTC
GCCACGACGTGTTAGGGCCGGGCCCGCGGGCTTTGTGGCTGTTGCCCACG
CCGGCGCAGCTGTCCGCTGACTCGGAGGCCCGTGTGCGCGGGTACGTGCT
GCCGTGAGTGTCGAGACATATGTAGCGGGCGTGCGGCCGTGGCTCTTTAG
TGTCTCCAAGTACTGGACATCATGCATAGCTTTGTAAGATGTAAGCCCGT
CTGAGAACTGGCCGTGCTTGAAGTGCCCGGTGCAGCTGCATTGACTACTT
CCAAGTACTTTACTGGACATATGAAGTACATGGGCATACTACTGCAGTAC
ATATACTATGAACTTCCGGCAAGAGCACGTGCAAGTCACTGTACTTGGAA
GTTCTCACGTTGTGCTCGCCTTAAGTTATAGTCCATACACCATGGACCAG
AAGTGAACTTCTACTACCAAACCTGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:565621..566596+

>mRNA_S-ischiensis_contig83.20026.1 ID=mRNA_S-ischiensis_contig83.20026.1|Name=mRNA_S-ischiensis_contig83.20026.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1314bp|location=Sequence derived from alignment at S-ischiensis_contig83:565621..566596+ (Schizocladia ischiensis KU_0333)
GTGGGTGCAGGCACCGTGGACCGCCTGCTTGCCGCGGAGCAGCAGGAGGC
GCGGCGGGCCCGCGGAACGTCGGCGACGGCAGGGGCGCCAACCCTGCCGC
CGCCACCACCACCACCCCCGCCATGGGAGCTGCAGGGGCATGACAGCGAT
GCAGCGGCCACGGGATACTCGGCGGGGCCAGGCGCGGTGGCCAAAACGAG
GCGGAGGCCGGTCGCCTGGGGCCACATCTTGTGGGGCGGGCCGCCAATAC
CGCCGCCTCCCCCCCCCGGGCCCCGACCGCCGCCGCCGCCGCCGCCGATT
GATGCCACCGGGCCATGTGCTGGCACAACGGGGCCGCCATGGCCGCCCGG
GCCCAAACGCGAAGGGACGCCCCCGCGGCTGACCGGCACAGGCGCGGCGG
GACTTGGAGGTGGTGACTCGGAAGGGGGCCGGCCCGGGGGCCCGGGCCCC
AAGTTGGCACCAAGTCAGGTTGTGCAAGCAGATGCGAACCCGGGGGGGGG
TGCAGGGTGCCGTGACGAAGTTTCGCGCGGCAGGTGTTGGCATGCTGTTC
GCCACGACGTGTTAGGGCCGGGCCCGCGGGCTTTGTGGCTGTTGCCCACG
CCGGCGCAGCTGTCCGCTGACTCGGAGGCCCGTGTGCGCGGGTACGTGCT
GCCGTGAGTGGGTGCAGGCACCGTGGACCGCCTGCTTGCCGCGGAGCAGC
AGGAGGCGCGGCGGGCCCGCGGAACGTCGGCGACGGCAGGGGCGCCAACC
CTGCCGCCGCCACCACCACCACCCCCGCCATGGGAGCTGCAGGGGCATGA
CAGCGATGCAGCGGCCACGGGATACTCGGCGGGGCCAGGCGCGGTGGCCA
AAACGAGGCGGAGGCCGGTCGCCTGGGGCCACATCTTGTGGGGCGGGCCG
CCAATACCGCCGCCTCCCCCCCCCGGGCCCCGACCGCCGCCGCCGCCGCC
GCCGATTGATGCCACCGGGCCATGTGCTGGCACAACGGGGCCGCCATGGC
CGCCCGGGCCCAAACGCGAAGGGACGCCCCCGCGGCTGACCGGCACAGGC
GCGGCGGGACTTGGAGGTGGTGACTCGGAAGGGGGCCGGCCCGGGGGCCC
GGGCCCCAAGTTGGCACCAAGTCAGGTTGTGCAAGCAGATGCGAACCCGG
GGGGGGGTGCAGGGTGCCGTGACGAAGTTTCGCGCGGCAGGTGTTGGCAT
GCTGTTCGCCACGACGTGTTAGGGCCGGGCCCGCGGGCTTTGTGGCTGTT
GCCCACGCCGGCGCAGCTGTCCGCTGACTCGGAGGCCCGTGTGCGCGGGT
ACGTGCTGCCGTGA
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