mRNA_S-ischiensis_contig83.20020.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.20020.1
Unique NamemRNA_S-ischiensis_contig83.20020.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig83.20020.1 vs. uniprot
Match: D8LBK0_ECTSI (Bromodomain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK0_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 2.680e-35
Identity = 66/106 (62.26%), Postives = 80/106 (75.47%), Query Frame = 1
Query:   79 ARRTALRLRRCRAVLNRLCCHADIVPFLEPVDTATVPGYAAVVARPCCMRDTHGRLAGGWYLSEHAFAADVRLAWANAKQYNLEGSQLWRAADGLTREFEALFCDW 396
            ARRT  RL RC++VLNRLCC+ D++ FLE VD A VPGY   + RP  MR    RL  G Y++E AFA+DVRLAW+NAK +N EGS+LW AAD L+REFEALFC+W
Sbjct:  543 ARRTVFRLVRCKSVLNRLCCNEDVIAFLESVDPAEVPGYHTKITRPVHMRLVDQRLKRGGYVNEFAFASDVRLAWSNAKLFNREGSELWLAADRLSREFEALFCEW 648          
BLAST of mRNA_S-ischiensis_contig83.20020.1 vs. uniprot
Match: A0A6H5KEY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEY2_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 3.070e-35
Identity = 67/106 (63.21%), Postives = 79/106 (74.53%), Query Frame = 1
Query:   79 ARRTALRLRRCRAVLNRLCCHADIVPFLEPVDTATVPGYAAVVARPCCMRDTHGRLAGGWYLSEHAFAADVRLAWANAKQYNLEGSQLWRAADGLTREFEALFCDW 396
            ARRT  RL RC++VLNRLCC+ D + FLE VD A VPGY   + RP  MR    RL  G YL+E AFA+DVRLAW+NAK +N EGS+LW AAD L+REFEALFC+W
Sbjct:  567 ARRTVFRLVRCKSVLNRLCCNEDAIAFLESVDPAEVPGYHTKITRPVHMRLVDQRLKRGGYLNEFAFASDVRLAWSNAKLFNREGSELWLAADRLSREFEALFCEW 672          
BLAST of mRNA_S-ischiensis_contig83.20020.1 vs. uniprot
Match: A0A836CNY5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNY5_9STRA)

HSP 1 Score: 134 bits (336), Expect = 3.830e-33
Identity = 70/127 (55.12%), Postives = 85/127 (66.93%), Query Frame = 1
Query:   76 AARRTALRLRRCRAVLNRLCCHADIVPFLEPVDTATVPGYAAVVARPCCMRDTHGRLAGGWYLSEHAFAADVRLAWANAKQYNLEGSQLWRAADGLTREFEALFCDWYE------VGPSPSRPPAPR 438
            +AR +A RLRRC+AVLN +CCHADI PFLE VD A  P YA VV RP  MR    RL  G Y++E +FAAD+RLA+ANA++YN EGS+LWRAA  + R+FE +F  W        V  S   P APR
Sbjct:  571 SARLSANRLRRCKAVLNAVCCHADINPFLEAVDPAEAPDYALVVRRPVYMRLVDERLKAGMYVNEFSFAADMRLAFANAQRYNAEGSELWRAAAAIARDFERMFLQWVVAPADAGVDASSGEPRAPR 697          
BLAST of mRNA_S-ischiensis_contig83.20020.1 vs. uniprot
Match: A0A7S1BCL4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BCL4_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.360e-16
Identity = 43/100 (43.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:   97 RLRRCRAVLNRLCCHADIVPFLEPVDTATVPGYAAVVARPCCMRDTHGRLAGGWYLSEHAFAADVRLAWANAKQYNLEGSQLWRAADGLTREFEALFCDW 396
            +LRRC AVL+R+C   + +PFL+P+D   V  YA ++ RP C+RD   +L  G Y +  AFA DVRL + N + +N  GS+L + A  L   F+  FC W
Sbjct:  212 KLRRCVAVLHRICVLPECMPFLDPIDLNGVDDYAEMIRRPICIRDVREKLDRGDYETVFAFANDVRLIFTNCQVFNPPGSELNQWATLLHSVFDKYFCHW 311          
BLAST of mRNA_S-ischiensis_contig83.20020.1 vs. uniprot
Match: A0A3R6VP11_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6VP11_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.590e-13
Identity = 40/103 (38.83%), Postives = 55/103 (53.40%), Query Frame = 1
Query:  100 LRRCRAVLNRLCCHADIVPFLEPVDTATVPGYAAVVARPCCMRDTHGRLAGGWYLSEHA----FAADVRLAWANAKQYNLEGSQLWRAADGLTREFEALFCDW 396
            + RCR +L RL       PFL PV+ +  PGY  V+  P       GRL    Y S       FA+D+RL +AN K++N EGS +   AD L ++FE +F +W
Sbjct:  217 MERCRGILRRLMAEPSAEPFLHPVNLSDAPGYLDVIYNPIDFGTILGRLKKEAYYSGPIAVALFASDMRLVFANCKEFNAEGSDIVVTADHLAKDFEKMFYEW 319          
BLAST of mRNA_S-ischiensis_contig83.20020.1 vs. uniprot
Match: W4GEM0_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GEM0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.750e-13
Identity = 40/103 (38.83%), Postives = 55/103 (53.40%), Query Frame = 1
Query:  100 LRRCRAVLNRLCCHADIVPFLEPVDTATVPGYAAVVARPCCMRDTHGRLAGGWYLSEHA----FAADVRLAWANAKQYNLEGSQLWRAADGLTREFEALFCDW 396
            + RCR +L RL       PFL PV+ +  PGY  V+  P       GRL    Y S       FA+D+RL +AN K++N EGS +   AD L ++FE +F +W
Sbjct:  217 MERCRGILRRLMAEPSAEPFLHPVNLSDAPGYLDVIYNPIDFGTILGRLKKEVYYSGPIAVALFASDMRLVFANCKEFNAEGSDIVVTADHLAKDFEKMFYEW 319          
BLAST of mRNA_S-ischiensis_contig83.20020.1 vs. uniprot
Match: A0A6G0WQ84_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WQ84_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 5.080e-13
Identity = 39/103 (37.86%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  100 LRRCRAVLNRLCCHADIVPFLEPVDTATVPGYAAVVARPCCMRDTHGRLAGGWY----LSEHAFAADVRLAWANAKQYNLEGSQLWRAADGLTREFEALFCDW 396
            + RC  ++ RL       PFL PVD + VP Y  V+  P        RL    Y    ++   FA+DVRL +AN K++N EGS++  AAD L+++FE +F +W
Sbjct:  216 MERCMGIVRRLMSEPSAEPFLHPVDVSEVPDYLDVIYNPIDFGTILTRLTKANYYTGPIAIALFASDVRLVFANCKEFNAEGSEISSAADQLSKDFERMFYEW 318          
BLAST of mRNA_S-ischiensis_contig83.20020.1 vs. uniprot
Match: A0A397A626_9STRA (Uncharacterized protein (Fragment) n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A626_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.290e-12
Identity = 40/114 (35.09%), Postives = 56/114 (49.12%), Query Frame = 1
Query:  100 LRRCRAVLNRLCCHADIVPFLEPVDTATVPGYAAVVARPCCMRDTHGRLAGGWYLSEHA---------------FAADVRLAWANAKQYNLEGSQLWRAADGLTREFEALFCDW 396
            + RCR +L RL       PFL PV+ +  PGY  V+  P       GRL    Y S +                FA+D+RL +AN K++N EGS +   AD L ++FE +F +W
Sbjct:  217 MERCRGILRRLMAEPSAEPFLHPVNLSDAPGYLDVIYNPIDFGTILGRLKKEVYYSANIIHNICFVLGPIAVALFASDMRLVFANCKEFNAEGSDIVVTADHLAKDFEKMFYEW 330          
BLAST of mRNA_S-ischiensis_contig83.20020.1 vs. uniprot
Match: A0A7S2LNH2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LNH2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.380e-12
Identity = 43/101 (42.57%), Postives = 53/101 (52.48%), Query Frame = 1
Query:  100 LRRCRAVLNRLCCHADIVPFLEPVDTATVPGYAAVVARPCCMRDTHGRLAG--GWYLSEHAFAADVRLAWANAKQYNLEGSQLWRAADGLTREFEALFCDW 396
            +RRC AVL+RLC       FLEPVDT     Y  VV  P  +R    +LA    W   E  FA DVR  W N K YN  G+ +W  AD +++ FE L+  W
Sbjct:  420 IRRCYAVLDRLCKDKMADIFLEPVDTDEFDDYLDVVDFPMDLRTVREKLASVKNWQGPE-VFARDVRKVWNNCKIYNAHGTAIWHVADYMSKLFERLYHAW 519          
BLAST of mRNA_S-ischiensis_contig83.20020.1 vs. uniprot
Match: A0A8B8IFV3_9NEOP (bromodomain and WD repeat-containing protein 1-like n=1 Tax=Vanessa tameamea TaxID=334116 RepID=A0A8B8IFV3_9NEOP)

HSP 1 Score: 73.9 bits (180), Expect = 3.030e-12
Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = 1
Query:  109 CRAVLNRLCCHADIVPFLEPVDTATVPGYAAVVARPCCMRDTHGRLAGGWYLSEHAFAADVRLAWANAKQYNL-EGSQLWRAADGLTREFEALF 387
            C A+L  LC  AD  PF EPV +A VP Y AVV+RP  +     RLA G Y      AADVRL +AN++ YN  + S+++     L+  FEAL+
Sbjct:  544 CAALLRELCASADAEPFREPVSSAQVPDYFAVVSRPMDLGTVRRRLACGRYARAAQLAADVRLVFANSRLYNTNKRSRIYSMTVRLSSLFEALW 637          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.20020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBK0_ECTSI2.680e-3562.26Bromodomain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KEY2_9PHAE3.070e-3563.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CNY5_9STRA3.830e-3355.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1BCL4_9STRA1.360e-1643.00Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A3R6VP11_9STRA2.590e-1338.83Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4GEM0_9STRA2.750e-1338.83Uncharacterized protein n=8 Tax=Aphanomyces astaci... [more]
A0A6G0WQ84_9STRA5.080e-1337.86Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A397A626_9STRA2.290e-1235.09Uncharacterized protein (Fragment) n=4 Tax=Aphanom... [more]
A0A7S2LNH2_9STRA2.380e-1242.57Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A8B8IFV3_9NEOP3.030e-1244.68bromodomain and WD repeat-containing protein 1-lik... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:519778..521225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.8
Seed ortholog evalue1.2e-30
Seed eggNOG ortholog2880.D8LBK0
KEGG koko:K10608,ko:K11658,ko:K11756,ko:K12035
KEGG Pathwayko04120,ko05206,map04120,map05206
EggNOG free text desc.chromatin remodeling
EggNOG OGsCOG5076@1,KOG1245@2759,KOG1474@2759,KOG2177@1,KOG2177@2759
EC2.3.2.27
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03021,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size504
Cds size504
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.20020.1prot_S-ischiensis_contig83.20020.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 519778..521225 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817331.124476-CDS-S-ischiensis_contig83:519777..5198851622817331.124476-CDS-S-ischiensis_contig83:519777..519885Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 519778..519885 -
1695741032.8126645-CDS-S-ischiensis_contig83:519777..5198851695741032.8126645-CDS-S-ischiensis_contig83:519777..519885Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 519778..519885 -
1622817331.137248-CDS-S-ischiensis_contig83:520271..5206111622817331.137248-CDS-S-ischiensis_contig83:520271..520611Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 520272..520611 -
1695741032.8237383-CDS-S-ischiensis_contig83:520271..5206111695741032.8237383-CDS-S-ischiensis_contig83:520271..520611Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 520272..520611 -
1622817331.1483588-CDS-S-ischiensis_contig83:521169..5212251622817331.1483588-CDS-S-ischiensis_contig83:521169..521225Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 521170..521225 -
1695741032.8372536-CDS-S-ischiensis_contig83:521169..5212251695741032.8372536-CDS-S-ischiensis_contig83:521169..521225Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 521170..521225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.20020.1

>prot_S-ischiensis_contig83.20020.1 ID=prot_S-ischiensis_contig83.20020.1|Name=mRNA_S-ischiensis_contig83.20020.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=168bp
SGTGGGGGGGRSRSRSRSRGGGGGGAARRTALRLRRCRAVLNRLCCHADI
VPFLEPVDTATVPGYAAVVARPCCMRDTHGRLAGGWYLSEHAFAADVRLA
WANAKQYNLEGSQLWRAADGLTREFEALFCDWYEVGPSPSRPPAPRPPPT
APPPPPPRPPPAATVSPV
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mRNA from alignment at S-ischiensis_contig83:519778..521225-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.20020.1 ID=mRNA_S-ischiensis_contig83.20020.1|Name=mRNA_S-ischiensis_contig83.20020.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1448bp|location=Sequence derived from alignment at S-ischiensis_contig83:519778..521225- (Schizocladia ischiensis KU_0333)
AGCGGGACCGGGGGGGGCGGGGGGGGGGGGCGTTCCCGATCTCGGTCCCG TTCCCGGTCCCCGATGCCGCCGCCGGATCTGCTCTCGGCCGCGGCGGCGG GGAGTTGTTACGTCGCGGGCGGTGCCGGGGGCTGGGGGGGGGCGGCGGCG GGGGCGGCGGCGGCAGTGGCGGCGGCAGCGGAGGGGGAGGGGGAGGAGGG CGGGCAAGACCAGCGGAAGCTCGTCCGGCAGGCGCAGCAGCTGCTCCGAC GGACGACGCTGCCCTTCCGGGCCGGGCCGCACGTGGTCACGTGCTTCGGG GCGGTGACCCTGGCCCTGGGCTTCCACGACGCCCACCTCATCATCCCCAT GGGCTTCCGCTCCACCTACTCGTGCTTTCTGCCCGCCGCCGCCGCTGCCG CCGGCACGGTCGGGGGGGGGGCGCGACGCTCCCTGGTGCAGTTTGAGTGC GAGGTTGCGGCCGCTGCCGCCGCCGCCACCGCCGCCACGGCGCACGAGGA AGGAGGGCCGCCCCGGGGGCAGCAGCGGCCCGTGTTCCGCATCTCCCACT GCGGGCAGCCGGTCGCGGAGGCGTCCACCGGGCGGGGGGCATGGCGGGCA GCCCTGCGGGGGAGGGGGGGGGGGGGGGGCGGCGCCGCGCGACGGACCGC CCTGCGCCTGCGGCGCTGCCGGGCGGTGCTGAACCGCCTGTGCTGCCACG CGGACATCGTGCCCTTCCTGGAGCCGGTGGATACGGCGACGGTGCCAGGC TACGCGGCGGTGGTGGCGCGGCCGTGCTGCATGCGCGACACGCACGGCCG GCTGGCCGGGGGGTGGTACCTCTCCGAGCACGCCTTCGCTGCCGACGTGC GCCTCGCGTGGGCCAATGCCAAGCAGTACAACCTCGAGGGGTCCCAGCTG TGGCGCGCGGCCGACGGGCTCACCCGCGAGTTCGAGGCCCTCTTCTGCGA CTGGGTGCTGAACCCGCCGGATGGCGGCGGCGGCGGCGGCAGCAGCGGCG GGGGGGGAGGGGGGTGTGGCCGTCAGCCCCCCCGGGGGCCGTGGGACGAC TGGTCTGTGCTCCGGTACTTCGAGCCCTTCTCAGGATGCACCAAGTGTGC CAAGGGCAGGGGACCGGGATGGCAACACGACGGCGGCAGCGGCGGCGGCG GCAAGGGCAAGGGCAAGGTGAGGGACATGGGTGGGGGCAGGGGGGGAAAG GGCCGGGCAGGGCAGCATGGCAGGTGGGTGGCCTGCCGGTGTGCGGGCGC TCACTTGCTCGCTTGGATGCTTGTTTTTTCCTCAGCATTCAACTGCCCAC CGGTGGATTCTAGCACATTCAAGCACGCATGCTGTACGAGTACGAAGTAG GACCTAGTCCGTCCCGCCCGCCCGCCCCCCGCCCACCGCCCACCGCCCCG CCGCCCCCCCCCCCGCGCCCACCGCCTGCCGCCACCGTCTCCCCCGTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:519778..521225-

>mRNA_S-ischiensis_contig83.20020.1 ID=mRNA_S-ischiensis_contig83.20020.1|Name=mRNA_S-ischiensis_contig83.20020.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1008bp|location=Sequence derived from alignment at S-ischiensis_contig83:519778..521225- (Schizocladia ischiensis KU_0333)
AGCGGGACCGGGGGGGGCGGGGGGGGGGGGCGTTCCCGATCTCGGTCCCG
TTCCCGAGCGGGACCGGGGGGGGCGGGGGGGGGGGGCGTTCCCGATCTCG
GTCCCGTTCCCGGGGGGGGGGGGGGGGCGGCGCCGCGCGACGGACCGCCC
TGCGCCTGCGGCGCTGCCGGGCGGTGCTGAACCGCCTGTGCTGCCACGCG
GACATCGTGCCCTTCCTGGAGCCGGTGGATACGGCGACGGTGCCAGGCTA
CGCGGCGGTGGTGGCGCGGCCGTGCTGCATGCGCGACACGCACGGCCGGC
TGGCCGGGGGGTGGTACCTCTCCGAGCACGCCTTCGCTGCCGACGTGCGC
CTCGCGTGGGCCAATGCCAAGCAGTACAACCTCGAGGGGTCCCAGCTGTG
GCGCGCGGCCGACGGGCTCACCCGCGAGTTCGAGGCCCTCTTCTGCGACT
GGGGGGGGGGGGGGGGGCGGCGCCGCGCGACGGACCGCCCTGCGCCTGCG
GCGCTGCCGGGCGGTGCTGAACCGCCTGTGCTGCCACGCGGACATCGTGC
CCTTCCTGGAGCCGGTGGATACGGCGACGGTGCCAGGCTACGCGGCGGTG
GTGGCGCGGCCGTGCTGCATGCGCGACACGCACGGCCGGCTGGCCGGGGG
GTGGTACCTCTCCGAGCACGCCTTCGCTGCCGACGTGCGCCTCGCGTGGG
CCAATGCCAAGCAGTACAACCTCGAGGGGTCCCAGCTGTGGCGCGCGGCC
GACGGGCTCACCCGCGAGTTCGAGGCCCTCTTCTGCGACTGGTACGAAGT
AGGACCTAGTCCGTCCCGCCCGCCCGCCCCCCGCCCACCGCCCACCGCCC
CGCCGCCCCCCCCCCCGCGCCCACCGCCTGCCGCCACCGTCTCCCCCGTG
TACGAAGTAGGACCTAGTCCGTCCCGCCCGCCCGCCCCCCGCCCACCGCC
CACCGCCCCGCCGCCCCCCCCCCCGCGCCCACCGCCTGCCGCCACCGTCT
CCCCCGTG
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