mRNA_S-ischiensis_contig83.20020.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig83.20020.1 vs. uniprot
Match: D8LBK0_ECTSI (Bromodomain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK0_ECTSI) HSP 1 Score: 140 bits (352), Expect = 2.680e-35 Identity = 66/106 (62.26%), Postives = 80/106 (75.47%), Query Frame = 1
Query: 79 ARRTALRLRRCRAVLNRLCCHADIVPFLEPVDTATVPGYAAVVARPCCMRDTHGRLAGGWYLSEHAFAADVRLAWANAKQYNLEGSQLWRAADGLTREFEALFCDW 396
ARRT RL RC++VLNRLCC+ D++ FLE VD A VPGY + RP MR RL G Y++E AFA+DVRLAW+NAK +N EGS+LW AAD L+REFEALFC+W
Sbjct: 543 ARRTVFRLVRCKSVLNRLCCNEDVIAFLESVDPAEVPGYHTKITRPVHMRLVDQRLKRGGYVNEFAFASDVRLAWSNAKLFNREGSELWLAADRLSREFEALFCEW 648
BLAST of mRNA_S-ischiensis_contig83.20020.1 vs. uniprot
Match: A0A6H5KEY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEY2_9PHAE) HSP 1 Score: 139 bits (351), Expect = 3.070e-35 Identity = 67/106 (63.21%), Postives = 79/106 (74.53%), Query Frame = 1
Query: 79 ARRTALRLRRCRAVLNRLCCHADIVPFLEPVDTATVPGYAAVVARPCCMRDTHGRLAGGWYLSEHAFAADVRLAWANAKQYNLEGSQLWRAADGLTREFEALFCDW 396
ARRT RL RC++VLNRLCC+ D + FLE VD A VPGY + RP MR RL G YL+E AFA+DVRLAW+NAK +N EGS+LW AAD L+REFEALFC+W
Sbjct: 567 ARRTVFRLVRCKSVLNRLCCNEDAIAFLESVDPAEVPGYHTKITRPVHMRLVDQRLKRGGYLNEFAFASDVRLAWSNAKLFNREGSELWLAADRLSREFEALFCEW 672
BLAST of mRNA_S-ischiensis_contig83.20020.1 vs. uniprot
Match: A0A836CNY5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNY5_9STRA) HSP 1 Score: 134 bits (336), Expect = 3.830e-33 Identity = 70/127 (55.12%), Postives = 85/127 (66.93%), Query Frame = 1
Query: 76 AARRTALRLRRCRAVLNRLCCHADIVPFLEPVDTATVPGYAAVVARPCCMRDTHGRLAGGWYLSEHAFAADVRLAWANAKQYNLEGSQLWRAADGLTREFEALFCDWYE------VGPSPSRPPAPR 438
+AR +A RLRRC+AVLN +CCHADI PFLE VD A P YA VV RP MR RL G Y++E +FAAD+RLA+ANA++YN EGS+LWRAA + R+FE +F W V S P APR
Sbjct: 571 SARLSANRLRRCKAVLNAVCCHADINPFLEAVDPAEAPDYALVVRRPVYMRLVDERLKAGMYVNEFSFAADMRLAFANAQRYNAEGSELWRAAAAIARDFERMFLQWVVAPADAGVDASSGEPRAPR 697
BLAST of mRNA_S-ischiensis_contig83.20020.1 vs. uniprot
Match: A0A7S1BCL4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BCL4_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 1.360e-16 Identity = 43/100 (43.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query: 97 RLRRCRAVLNRLCCHADIVPFLEPVDTATVPGYAAVVARPCCMRDTHGRLAGGWYLSEHAFAADVRLAWANAKQYNLEGSQLWRAADGLTREFEALFCDW 396
+LRRC AVL+R+C + +PFL+P+D V YA ++ RP C+RD +L G Y + AFA DVRL + N + +N GS+L + A L F+ FC W
Sbjct: 212 KLRRCVAVLHRICVLPECMPFLDPIDLNGVDDYAEMIRRPICIRDVREKLDRGDYETVFAFANDVRLIFTNCQVFNPPGSELNQWATLLHSVFDKYFCHW 311
BLAST of mRNA_S-ischiensis_contig83.20020.1 vs. uniprot
Match: A0A3R6VP11_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6VP11_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 2.590e-13 Identity = 40/103 (38.83%), Postives = 55/103 (53.40%), Query Frame = 1
Query: 100 LRRCRAVLNRLCCHADIVPFLEPVDTATVPGYAAVVARPCCMRDTHGRLAGGWYLSEHA----FAADVRLAWANAKQYNLEGSQLWRAADGLTREFEALFCDW 396
+ RCR +L RL PFL PV+ + PGY V+ P GRL Y S FA+D+RL +AN K++N EGS + AD L ++FE +F +W
Sbjct: 217 MERCRGILRRLMAEPSAEPFLHPVNLSDAPGYLDVIYNPIDFGTILGRLKKEAYYSGPIAVALFASDMRLVFANCKEFNAEGSDIVVTADHLAKDFEKMFYEW 319
BLAST of mRNA_S-ischiensis_contig83.20020.1 vs. uniprot
Match: W4GEM0_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GEM0_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 2.750e-13 Identity = 40/103 (38.83%), Postives = 55/103 (53.40%), Query Frame = 1
Query: 100 LRRCRAVLNRLCCHADIVPFLEPVDTATVPGYAAVVARPCCMRDTHGRLAGGWYLSEHA----FAADVRLAWANAKQYNLEGSQLWRAADGLTREFEALFCDW 396
+ RCR +L RL PFL PV+ + PGY V+ P GRL Y S FA+D+RL +AN K++N EGS + AD L ++FE +F +W
Sbjct: 217 MERCRGILRRLMAEPSAEPFLHPVNLSDAPGYLDVIYNPIDFGTILGRLKKEVYYSGPIAVALFASDMRLVFANCKEFNAEGSDIVVTADHLAKDFEKMFYEW 319
BLAST of mRNA_S-ischiensis_contig83.20020.1 vs. uniprot
Match: A0A6G0WQ84_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WQ84_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 5.080e-13 Identity = 39/103 (37.86%), Postives = 57/103 (55.34%), Query Frame = 1
Query: 100 LRRCRAVLNRLCCHADIVPFLEPVDTATVPGYAAVVARPCCMRDTHGRLAGGWY----LSEHAFAADVRLAWANAKQYNLEGSQLWRAADGLTREFEALFCDW 396
+ RC ++ RL PFL PVD + VP Y V+ P RL Y ++ FA+DVRL +AN K++N EGS++ AAD L+++FE +F +W
Sbjct: 216 MERCMGIVRRLMSEPSAEPFLHPVDVSEVPDYLDVIYNPIDFGTILTRLTKANYYTGPIAIALFASDVRLVFANCKEFNAEGSEISSAADQLSKDFERMFYEW 318
BLAST of mRNA_S-ischiensis_contig83.20020.1 vs. uniprot
Match: A0A397A626_9STRA (Uncharacterized protein (Fragment) n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A626_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 2.290e-12 Identity = 40/114 (35.09%), Postives = 56/114 (49.12%), Query Frame = 1
Query: 100 LRRCRAVLNRLCCHADIVPFLEPVDTATVPGYAAVVARPCCMRDTHGRLAGGWYLSEHA---------------FAADVRLAWANAKQYNLEGSQLWRAADGLTREFEALFCDW 396
+ RCR +L RL PFL PV+ + PGY V+ P GRL Y S + FA+D+RL +AN K++N EGS + AD L ++FE +F +W
Sbjct: 217 MERCRGILRRLMAEPSAEPFLHPVNLSDAPGYLDVIYNPIDFGTILGRLKKEVYYSANIIHNICFVLGPIAVALFASDMRLVFANCKEFNAEGSDIVVTADHLAKDFEKMFYEW 330
BLAST of mRNA_S-ischiensis_contig83.20020.1 vs. uniprot
Match: A0A7S2LNH2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LNH2_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 2.380e-12 Identity = 43/101 (42.57%), Postives = 53/101 (52.48%), Query Frame = 1
Query: 100 LRRCRAVLNRLCCHADIVPFLEPVDTATVPGYAAVVARPCCMRDTHGRLAG--GWYLSEHAFAADVRLAWANAKQYNLEGSQLWRAADGLTREFEALFCDW 396
+RRC AVL+RLC FLEPVDT Y VV P +R +LA W E FA DVR W N K YN G+ +W AD +++ FE L+ W
Sbjct: 420 IRRCYAVLDRLCKDKMADIFLEPVDTDEFDDYLDVVDFPMDLRTVREKLASVKNWQGPE-VFARDVRKVWNNCKIYNAHGTAIWHVADYMSKLFERLYHAW 519
BLAST of mRNA_S-ischiensis_contig83.20020.1 vs. uniprot
Match: A0A8B8IFV3_9NEOP (bromodomain and WD repeat-containing protein 1-like n=1 Tax=Vanessa tameamea TaxID=334116 RepID=A0A8B8IFV3_9NEOP) HSP 1 Score: 73.9 bits (180), Expect = 3.030e-12 Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = 1
Query: 109 CRAVLNRLCCHADIVPFLEPVDTATVPGYAAVVARPCCMRDTHGRLAGGWYLSEHAFAADVRLAWANAKQYNL-EGSQLWRAADGLTREFEALF 387
C A+L LC AD PF EPV +A VP Y AVV+RP + RLA G Y AADVRL +AN++ YN + S+++ L+ FEAL+
Sbjct: 544 CAALLRELCASADAEPFREPVSSAQVPDYFAVVSRPMDLGTVRRRLACGRYARAAQLAADVRLVFANSRLYNTNKRSRIYSMTVRLSSLFEALW 637 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.20020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig83.20020.1 >prot_S-ischiensis_contig83.20020.1 ID=prot_S-ischiensis_contig83.20020.1|Name=mRNA_S-ischiensis_contig83.20020.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=168bp SGTGGGGGGGRSRSRSRSRGGGGGGAARRTALRLRRCRAVLNRLCCHADIback to top mRNA from alignment at S-ischiensis_contig83:519778..521225- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig83.20020.1 ID=mRNA_S-ischiensis_contig83.20020.1|Name=mRNA_S-ischiensis_contig83.20020.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1448bp|location=Sequence derived from alignment at S-ischiensis_contig83:519778..521225- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig83:519778..521225- >mRNA_S-ischiensis_contig83.20020.1 ID=mRNA_S-ischiensis_contig83.20020.1|Name=mRNA_S-ischiensis_contig83.20020.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1008bp|location=Sequence derived from alignment at S-ischiensis_contig83:519778..521225- (Schizocladia ischiensis KU_0333)back to top |