mRNA_S-ischiensis_contig83.20018.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig83.20018.1 vs. uniprot
Match: D8LBK0_ECTSI (Bromodomain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK0_ECTSI) HSP 1 Score: 217 bits (553), Expect = 2.200e-59 Identity = 113/237 (47.68%), Postives = 155/237 (65.40%), Query Frame = 1
Query: 280 VERVLMAWDFLCELRELVGFVDGPFQRMLVAMEGPRPGEAAVPRAGQVMLDEGGVLLTKVLLLELQRGLLEGDMRPAEVQNALALRPLNALTWPEVAADVLCALSVRRAYPGLAPPALAAMVTSRPPQWLARCVDILSVILDHPLVGPFLRAVDPASVPGYSSIVTHPMDLGTVRLRLWRGGGMYGYTGHWRMAGDVRLVWSNAKLFNPEDSEIWYAADVLSRAFESLYKAWVLDPE 990
VE+ LMAWDFL R+LVG V P +RM+ A+ P A+P ++ E +LLTK+LL+E+ R +L M V + LA RP+N LTWPEVA D L AL+ RA+P + +AA+++ RP WLARC D++++++ PL F+R VDPA VPGY+ +V+ PMDL TVR RLW Y H + D+RLVWSNAK+FN E+++ W+AAD L+ ESLY++WVL PE
Sbjct: 960 VEQALMAWDFLSSTRDLVGMVLPPTKRMIHALTPPTGKAVAIPTPSELAFSEACMLLTKILLVEV-RDVLRRHMSKKLVDDVLAQRPVNLLTWPEVAGDALVALANHRAHPEMRTSEMAALLSVRPSGWLARCGDMVAILISRPLAAAFVRPVDPAQVPGYADVVSKPMDLSTVRRRLWSRR----YQWHQEVVDDLRLVWSNAKVFNQENTDFWHAADSLALLTESLYESWVLQPE 1191
BLAST of mRNA_S-ischiensis_contig83.20018.1 vs. uniprot
Match: A0A6H5KKJ2_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ2_9PHAE) HSP 1 Score: 154 bits (388), Expect = 3.390e-38 Identity = 91/235 (38.72%), Postives = 128/235 (54.47%), Query Frame = 1
Query: 295 MAWDFLCELRELVGFVDGPFQRMLVAMEGPRPGEAAVPRAGQVMLDEGGVLLTKVLLLELQRGLLEGDMRPAEVQNALALRPLNALTWPEVAADVLCALSVRRAYPGLAPPALAAMVTSRPPQWLA---RCVDILSVILDHPLVGPFLRAVDPASVPGYSSIVTHPMDLGTVRLRLWRGGGMYGYTGHWRMAGDVRLVWSNAKLFNPEDSEIWYAADVLSRAFESLYKAWVLDPE 990
MAWDFL R+LVG V P +RM+ A+ P A+P ++ E +LLTK+LL+E+ R +L M V + LA RP+N LTWPEVA D L AL RA+P + +AA+++ RP WLA RC D++++++ PL F+R VDPA VPGY+ +V+ PMDL E+++ W+AAD L+ ESLY++WVL PE
Sbjct: 1 MAWDFLSSSRDLVGMVLPPTKRMIHALTPPTGKAVAIPTPSELAFSEACMLLTKILLVEV-RDVLRRHMSKKLVDDVLAQRPVNLLTWPEVAGDALVALVNHRAHPEMRTSEMAALLSVRPSGWLASIIRCGDMVAILISRPLAAAFVRPVDPAQVPGYADVVSKPMDL--------------------------------------ENTDYWHAADSLALLTESLYESWVLQPE 196
BLAST of mRNA_S-ischiensis_contig83.20018.1 vs. uniprot
Match: A0A836CNY5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNY5_9STRA) HSP 1 Score: 146 bits (369), Expect = 5.760e-35 Identity = 104/298 (34.90%), Postives = 146/298 (48.99%), Query Frame = 1
Query: 232 GRPAGPWEAASLSAVQVERVLMAWDFLCELRELVGFVDGPFQRMLVA---MEGPRPGEAAVPR-------------------AGQVMLDEGGVLLTKV-----------------LLLELQ----RGLLEGDMRPAEVQNALALRPLNALTWPEVAADVLCALSVRRAYPGLAPPALAAMVTSRPPQWLARCVDILSVILDHPLVGPFLRAVDPASVPGYSSIVTHPMDLGTVRLRLWRGGGMYGYTGHWRMAGDVRLVWSNAKLFNPEDSEIWYAADVLSRAFESLYKAWVLDPEAA 996
G PA A S + VE++L WDF+ RE G P + L ++G + ++ +E ++LTKV LLLE+Q +G G + V++A AL+PLNALTWPE AA L AL+VRR +PGL +A ++ P L+RC D+L ++ HPL+ PF+ VDP V GY+++V PMD+ VR RLW G + Y H A DVRL++ NA+ F+ + + AA L+ FE LY A V PEAA
Sbjct: 1074 GDPAPLLGALSAAGPLVEKLLAMWDFVTVFREQFGCAAAPLESALAGTLLLDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSDALLFEETCMVLTKVGEELRSARNDGSLDEWILLLEMQHLGGQGYHSGALTTKPVRDAHALKPLNALTWPEFAAQSLPALAVRRWHPGLMAVDVARIINLAPKGHLSRCGDVLCCLMVHPLIAPFMDPVDPQIVAGYAAVVATPMDVHLVRHRLWGGRNVPRYAHHRDFARDVRLIFDNARAFHRRGTPLHAAAAALAALFERLYAAHVTAPEAA 1371
BLAST of mRNA_S-ischiensis_contig83.20018.1 vs. uniprot
Match: A0A6H5KEY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEY2_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 3.450e-19 Identity = 52/107 (48.60%), Postives = 67/107 (62.62%), Query Frame = 1
Query: 667 LARCVDILSVILDHPLVGPFLRAVDPASVPGYSSIVTHPMDLGTVRLRLWRGGGMYGYTGHWRMAGDVRLVWSNAKLFNPEDSEIWYAADVLSRAFESLYKAWVLDP 987
L RC +L+ + + FL +VDPA VPGY + +T P+ + V RL RGG Y + A DVRL WSNAKLFN E SE+W AAD LSR FE+L+ WV++P
Sbjct: 574 LVRCKSVLNRLCCNEDAIAFLESVDPAEVPGYHTKITRPVHMRLVDQRLKRGG----YLNEFAFASDVRLAWSNAKLFNREGSELWLAADRLSREFEALFCEWVINP 676
BLAST of mRNA_S-ischiensis_contig83.20018.1 vs. uniprot
Match: A0A7S1V5M0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V5M0_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 3.210e-14 Identity = 44/107 (41.12%), Postives = 59/107 (55.14%), Query Frame = 1
Query: 661 QWLARCVDILSVILDHPLVGPFLRAVDPASVPGYSSIVTHPMDLGTVRLRLWRGGGMYGYTGHWRMAGDVRLVWSNAKLFNPEDSEIWYAADVLSRAFESLYKAWVL 981
Q + RC+ +L I + FL VD P Y IV PMDLGTVR +L + Y A DVR VW+N K++N ++IW+ AD +S+ FE L+ AWVL
Sbjct: 362 QPMRRCLKVLDHIAEDSFADIFLEPVDTEDFPDYEDIVDQPMDLGTVREKLLKKK----YQAPENFARDVRKVWNNCKVYNQHGTQIWFVADYMSKHFERLFHAWVL 464
BLAST of mRNA_S-ischiensis_contig83.20018.1 vs. uniprot
Match: A0A7S1YB59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YB59_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 4.400e-14 Identity = 44/107 (41.12%), Postives = 59/107 (55.14%), Query Frame = 1
Query: 661 QWLARCVDILSVILDHPLVGPFLRAVDPASVPGYSSIVTHPMDLGTVRLRLWRGGGMYGYTGHWRMAGDVRLVWSNAKLFNPEDSEIWYAADVLSRAFESLYKAWVL 981
Q + RC+ +L I + FL VD P Y IV PMDLGTVR +L + Y A DVR VW+N K++N ++IW+ AD +S+ FE L+ AWVL
Sbjct: 362 QPMRRCLKVLDHIAEDSFADIFLEPVDTEDFPDYEDIVDQPMDLGTVREKLLKKK----YQAPENFARDVRKVWNNCKVYNQHGTQIWFVADYMSKHFERLFHAWVL 464
BLAST of mRNA_S-ischiensis_contig83.20018.1 vs. uniprot
Match: A0A1Z5JSQ4_FISSO (Chromodomain-helicase-DNA-binding protein 7 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSQ4_FISSO) HSP 1 Score: 82.0 bits (201), Expect = 3.450e-13 Identity = 43/108 (39.81%), Postives = 58/108 (53.70%), Query Frame = 1
Query: 661 QWLARCVDILSVILDHPLVGPFLRAVDPASVPGYSSIVTHPMDLGTVRLRLWRGGGMYGYTGHWRMAGDVRLVWSNAKLFNPEDSEIWYAADVLSRAFESLYKAWVLD 984
Q L RC+ +L + FL VD P Y ++ PMDLGTVR +L Y + A D+R VW+N K++N S IW+ AD +S+ FE LY AWVL+
Sbjct: 426 QPLRRCLMVLERLAKDSFADIFLEPVDTEDFPDYEEVIDSPMDLGTVRSKLMSKK----YQMPEQFARDMRKVWNNCKIYNQHGSAIWHVADYMSKLFERLYHAWVLE 529
BLAST of mRNA_S-ischiensis_contig83.20018.1 vs. uniprot
Match: A0A7S3P5L3_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P5L3_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 3.460e-13 Identity = 41/108 (37.96%), Postives = 58/108 (53.70%), Query Frame = 1
Query: 661 QWLARCVDILSVILDHPLVGPFLRAVDPASVPGYSSIVTHPMDLGTVRLRLWRGGGMYGYTGHWRMAGDVRLVWSNAKLFNPEDSEIWYAADVLSRAFESLYKAWVLD 984
Q L RC +L + FL VDP P Y ++ PMD+GTVR ++ Y + A D+R +W+N K++N S IW+ AD +S+ FE LY AWVL+
Sbjct: 448 QPLRRCRMVLERLAKDSFADIFLEPVDPDDFPDYDDVIDTPMDIGTVRTKMESKK----YQAPEQFARDMRKIWNNCKIYNQHGSAIWHVADYMSKQFERLYNAWVLE 551
BLAST of mRNA_S-ischiensis_contig83.20018.1 vs. uniprot
Match: A0A7S2EV94_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EV94_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 6.160e-13 Identity = 44/108 (40.74%), Postives = 57/108 (52.78%), Query Frame = 1
Query: 661 QWLARCVDILSVILDHPLVGPFLRAVDPASVPGYSSIVTHPMDLGTVRLRLWRGGGMYGYTGHWRMAGDVRLVWSNAKLFNPEDSEIWYAADVLSRAFESLYKAWVLD 984
Q L RC+ +L I FL VD P Y V PMDLGTVR ++ R Y A D+R +W+N K++N S IW+ AD +S+ FE LY AWVL+
Sbjct: 38 QPLRRCLKVLDRISADGFSNIFLEPVDTEQFPDYEEYVDQPMDLGTVRDKIVRRK----YQAPENFARDMRRIWNNCKVYNQHGSAIWHVADYMSKQFERLYHAWVLE 141
BLAST of mRNA_S-ischiensis_contig83.20018.1 vs. uniprot
Match: A0A225X016_9STRA (Bromo domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X016_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 6.920e-13 Identity = 45/116 (38.79%), Postives = 62/116 (53.45%), Query Frame = 1
Query: 667 LARCVDILSVILDHPLVGPFLRAVDPASVPGYSSIVTHPMDLGTVRLRLWRGGGMYGYT---------GHWRMAGDVRLVWSNAKLFNPEDSEIWYAADVLSRAFESLYKAWVLDP 987
L RC+ I+ + HP PFL V+ +VP Y+ +V PMDL + ++L +G + H A D+RL+WSN KLFN + S I AAD+LS FE LYK + P
Sbjct: 891 LDRCLKIVECLKSHPFSKPFLTPVE--NVPMYTRVVKQPMDLSRIEIKLKKGAYIVDSNTVASGVKELDHTHFANDIRLMWSNCKLFNDDGSGITRAADILSAGFERLYKESIAPP 1004 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.20018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig83.20018.1 >prot_S-ischiensis_contig83.20018.1 ID=prot_S-ischiensis_contig83.20018.1|Name=mRNA_S-ischiensis_contig83.20018.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=359bp ERPGSAGGGEPPALIRLRSRPPPTLGSPEPLFRQKKTGPGQQHQQHQHQQback to top mRNA from alignment at S-ischiensis_contig83:507674..512180- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig83.20018.1 ID=mRNA_S-ischiensis_contig83.20018.1|Name=mRNA_S-ischiensis_contig83.20018.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4507bp|location=Sequence derived from alignment at S-ischiensis_contig83:507674..512180- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig83:507674..512180- >mRNA_S-ischiensis_contig83.20018.1 ID=mRNA_S-ischiensis_contig83.20018.1|Name=mRNA_S-ischiensis_contig83.20018.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2154bp|location=Sequence derived from alignment at S-ischiensis_contig83:507674..512180- (Schizocladia ischiensis KU_0333)back to top |