mRNA_S-ischiensis_contig83.20017.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.20017.1
Unique NamemRNA_S-ischiensis_contig83.20017.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.20017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:506813..507610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size287
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817324.6810455-CDS-S-ischiensis_contig83:506813..5069101622817324.6810455-CDS-S-ischiensis_contig83:506813..506910Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 506814..506910 -
1695741027.612922-CDS-S-ischiensis_contig83:506813..5069101695741027.612922-CDS-S-ischiensis_contig83:506813..506910Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 506814..506910 -
1622817324.6923103-CDS-S-ischiensis_contig83:507422..5076101622817324.6923103-CDS-S-ischiensis_contig83:507422..507610Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 507423..507610 -
1695741027.622907-CDS-S-ischiensis_contig83:507422..5076101695741027.622907-CDS-S-ischiensis_contig83:507422..507610Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 507423..507610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.20017.1prot_S-ischiensis_contig83.20017.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 506814..507610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.20017.1

>prot_S-ischiensis_contig83.20017.1 ID=prot_S-ischiensis_contig83.20017.1|Name=mRNA_S-ischiensis_contig83.20017.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=95bp
AEAGAGDRVGTTGHRRPVMPLDAATMHPAFAGRRPLWDGEGDNAPGLWDP
DRVHPTFFGHLLRPPAEPVPATAPCPTGQGLPTAVSELDHVLRIL
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mRNA from alignment at S-ischiensis_contig83:506813..507610-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.20017.1 ID=mRNA_S-ischiensis_contig83.20017.1|Name=mRNA_S-ischiensis_contig83.20017.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=798bp|location=Sequence derived from alignment at S-ischiensis_contig83:506813..507610- (Schizocladia ischiensis KU_0333)
GCTGAGGCCGGGGCCGGTGACAGGGTAGGGACTACAGGGCACCGCAGGCC
AGTGATGCCCCTCGATGCCGCCACGATGCACCCGGCTTTTGCAGGCAGAC
GGCCTCTGTGGGACGGCGAGGGGGACAACGCGCCGGGTCTCTGGGACCCG
GACCGCGTTCACCCGACTTTCTTTGGCCACCTCTTGCGGTGAGTGTGCGG
CGGCGGCCGCGGGGACCGAAGGGGTGCGGTACTCAACCCCCCTGCCCCCG
GGCGGGGGCAGCCCCCCCTCACCCACCCCTCCCCCCCCCTTGATTCGGCT
CATTTGCCCGCCCAAACCCCGCCGTGGCATGCACGACGAGTGCATTGCGC
TGCTGACTTGGAGCTCTACTACAGTAGTAGGGCTCTTTTGTTTTTGCAAG
TGCCAGTGCTTGGTACTGTACTGTACTGAGTACGGGTATTGTACAGCACC
GTACTCGCGTACAGCTTGTGATTGCTAGCTTATAGCCAGTTGGCTCGAGG
ATTTACAGTACTTCCAAGTACTAGGCACTGTACAAGACACGCCAGGAACG
CCCCCGCGCTCATCCCCCTCCCTCCCCCAGCACACACAAGCACGCACCCG
TTCACCCCCCACCCCCCCCCCCCCCGCCCCCCCCCCCGCCCCCACCCCCC
ACCGCCACACACACACGCGCGATACCCCCGACATCACACGGCGTTTACAG
CCCCCCAGCGGAACCCGTGCCAGCCACCGCCCCCTGCCCCACAGGCCAGG
GACTCCCTACGGCGGTCTCTGAGCTGGACCACGTCCTCCGGATTCTCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:506813..507610-

>mRNA_S-ischiensis_contig83.20017.1 ID=mRNA_S-ischiensis_contig83.20017.1|Name=mRNA_S-ischiensis_contig83.20017.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=570bp|location=Sequence derived from alignment at S-ischiensis_contig83:506813..507610- (Schizocladia ischiensis KU_0333)
GCTGAGGCCGGGGCCGGTGACAGGGTAGGGACTACAGGGCACCGCAGGCC
AGTGATGCCCCTCGATGCCGCCACGATGCACCCGGCTTTTGCAGGCAGAC
GGCCTCTGTGGGACGGCGAGGGGGACAACGCGCCGGGTCTCTGGGACCCG
GACCGCGTTCACCCGACTTTCTTTGGCCACCTCTTGCGGCTGAGGCCGGG
GCCGGTGACAGGGTAGGGACTACAGGGCACCGCAGGCCAGTGATGCCCCT
CGATGCCGCCACGATGCACCCGGCTTTTGCAGGCAGACGGCCTCTGTGGG
ACGGCGAGGGGGACAACGCGCCGGGTCTCTGGGACCCGGACCGCGTTCAC
CCGACTTTCTTTGGCCACCTCTTGCGCCCCCCAGCGGAACCCGTGCCAGC
CACCGCCCCCTGCCCCACAGGCCAGGGACTCCCTACGGCGGTCTCTGAGC
TGGACCACGTCCTCCGGATTCTCCCCCCCAGCGGAACCCGTGCCAGCCAC
CGCCCCCTGCCCCACAGGCCAGGGACTCCCTACGGCGGTCTCTGAGCTGG
ACCACGTCCTCCGGATTCTC
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