mRNA_S-ischiensis_contig83.20014.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.20014.1
Unique NamemRNA_S-ischiensis_contig83.20014.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig83.20014.1 vs. uniprot
Match: A0A6H5KEI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI4_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.400e-21
Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 3 
Query:    3 FGSEYWRVCGDVTSLLVRRHGNWWGIYKGSHKLLELVGCLDDSHECEFHLRCRIHEAVDVWGVADRLKEYLQAR 224
            FG+EYWR  GD   +LVRRHG WWG+Y G  K+ ELV  LD   + E +LR R+HEAVDVWGV+D++  YL+A+
Sbjct:  175 FGNEYWRFAGDKNLVLVRRHGCWWGVYDGPEKMQELVRSLDMDIDNERNLRNRLHEAVDVWGVSDKVDLYLKAQ 248
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BLAST of mRNA_S-ischiensis_contig83.20014.1 vs. uniprot
Match: D8LBK0_ECTSI (Bromodomain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK0_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.570e-20
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 3 
Query:    3 FGSEYWRVCGDVTSLLVRRHGNWWGIYKGSHKLLELVGCLDDSHECEFHLRCRIHEAVDVWGVADRLKEYLQAR 224
            +G+EYWR  GD   +LVRRHG WWG Y G  K+ ELV  LD   + E +LR R+HEAVDVWGV+D++  YL+A+
Sbjct: 1751 YGNEYWRFAGDKNLVLVRRHGCWWGTYDGPEKMQELVRSLDVDIDNERNLRNRLHEAVDVWGVSDKVDLYLKAK 1824
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.20014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KEI4_9PHAE2.400e-2156.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBK0_ECTSI1.570e-2055.41Bromodomain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:501323..502979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size235
Cds size234
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.20014.1prot_S-ischiensis_contig83.20014.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 501324..502979 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817324.5762262-CDS-S-ischiensis_contig83:501323..5013971622817324.5762262-CDS-S-ischiensis_contig83:501323..501397Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 501324..501397 -
1695741027.5629828-CDS-S-ischiensis_contig83:501323..5013971695741027.5629828-CDS-S-ischiensis_contig83:501323..501397Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 501324..501397 -
1622817324.587539-CDS-S-ischiensis_contig83:502166..5022281622817324.587539-CDS-S-ischiensis_contig83:502166..502228Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 502167..502228 -
1695741027.5720668-CDS-S-ischiensis_contig83:502166..5022281695741027.5720668-CDS-S-ischiensis_contig83:502166..502228Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 502167..502228 -
1622817324.5980828-CDS-S-ischiensis_contig83:502881..5029791622817324.5980828-CDS-S-ischiensis_contig83:502881..502979Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 502882..502979 -
1695741027.5828187-CDS-S-ischiensis_contig83:502881..5029791695741027.5828187-CDS-S-ischiensis_contig83:502881..502979Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 502882..502979 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.20014.1

>prot_S-ischiensis_contig83.20014.1 ID=prot_S-ischiensis_contig83.20014.1|Name=mRNA_S-ischiensis_contig83.20014.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=78bp
GLVLSTGACVAMLRHSLCGGMATGGGSTRAHTSCSSWWAAWTIPTSASST
SGAGSTRLWTSGGLQIGSKSTCKPEMMP
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mRNA from alignment at S-ischiensis_contig83:501323..502979-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.20014.1 ID=mRNA_S-ischiensis_contig83.20014.1|Name=mRNA_S-ischiensis_contig83.20014.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1657bp|location=Sequence derived from alignment at S-ischiensis_contig83:501323..502979- (Schizocladia ischiensis KU_0333)
GGTTTGGTTCTGAGTACTGGCGCGTGTGTGGCGATGTTACGTCACTCCTT
GTGCGGCGGCATGGCAACTGGTGGGGGATCTACAAGGGCTCACACAAGGC
GAGGGATAGGGGAACGGGCGGGACAGGGGGGCAGGCGGGTGGGGCGGCGG
CGGGTGGTGGTTTGGCGAACAGCGGGGAGGAGAGCGGGAGAGGAGGGGGG
GCAGAAATTCACAGAACTCGAGACACCGAAAAATGGGCAATATAACCACA
TTACTGGTACTCATATGTGCTCGAGTACTCACTATACGAAGTAATAGTGC
TCGCCGTGCTCGAGTACTGGTGTACTGTAGAGCTCTAGTACTTGGAAGTA
CAGTACACAGTGCTGCACTGTACTTGCAGTAGTCCTCGAGTACAAGTACC
TGGTACTCACACTCTGCGCATGCGGGACTTGCAAGAACAGCACGTGCTTC
TGCATCCGCTCGCTCACCGTCCTGGTCACCCCCTTGCTATGACACCACCG
TAGGAGAGCTTTCGACGCACAACGCGGTTCCAGAGCACTGCAGGCACCCT
TTTGCGGGTGCTCTTGAAGATGCAGCGCCCCGCTAGCCGGCTGAATGCTT
GCTTCATGGCCTTGACTACCCCCCCCCCCCCTCCCTGCCGCCGCCCACGC
CCGCCGGCCCGCCCCACCCCCCCCTGTCCTGTGGCCTGGCCTTGGCCCTT
CCCTCCCTTGTGCTGCAATTGCCCCTCCCTCGTGACGTACTCGTACGACA
GCTGCTCGAGCTGGTGGGCTGCCTGGACGATTCCCACGAGTGCGAGTTCC
ACCTCCGGTGCAGGTACTGTGGTACTTCAAGCGATGTCCCGTCACGCAAA
CGTCACCTTGGCTCGCAAGAGTTTTTTGCGAGAAGACAAACATGAGTGGG
AAAGAAGAGGTGTTCCCACACGCAAGAGTTTTTTTCTAGCGCGCGCCGAA
TGCGGAGATTGGCAGTACTGTCAGTGCCAGCACTGCGGAGACGTTTGGCG
AGTAGCACCTGCCCGTGCGGCGAGGGGGGGGGGGGGGGGGGGGGGGTGGG
AGGGGAGCGGGCGGTTGAGGGAGGTGGGAGGGCGAGAGGAGAGGGGAGGG
GAGCGCAAGGATGAGCCCTGGGCGTGATCCAGACACACTATGATGTCATG
GCAAACTATAGTACAGTACTTCGTATATTGGAGTGGACATCACGCACGAT
ACATCACGCGCGTGAGCGAGAACCGCCCGTTCTCATTGCTGGCGCAGCCT
TCAAATAGAGGATACTGCAATGGTGCGAGTACATACCAGTATTCCTGTCT
CTATTAGGTATCTTCCCCCGCTTCATTTCGCCCCCCTTCCGCGGCCAGCC
CCCTTGCACGCAGACAGTGGGCATACACGTGGCTACAGCAAGCAACACAC
GGGCACATCCACATCCACACACACCACCGCTACAGCCACATCACCACCAC
CACCACCACCGCCACCATCACCAAAACCGCCACCACCACCACCACCACCA
CCACCACCACCCCCACCCCCACCCCCCCATTTCCTATTCCTCCTCTTACC
CCCCCCCCCACCCCCCCCGCCCCGGGCTGCAGGATCCACGAGGCTGTGGA
CGTCTGGGGGGTTGCAGATAGGCTCAAAGAGTACCTGCAAGCCAGAGATG
ATGCCTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:501323..502979-

>mRNA_S-ischiensis_contig83.20014.1 ID=mRNA_S-ischiensis_contig83.20014.1|Name=mRNA_S-ischiensis_contig83.20014.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=468bp|location=Sequence derived from alignment at S-ischiensis_contig83:501323..502979- (Schizocladia ischiensis KU_0333)
GGTTTGGTTCTGAGTACTGGCGCGTGTGTGGCGATGTTACGTCACTCCTT
GTGCGGCGGCATGGCAACTGGTGGGGGATCTACAAGGGCTCACACAAGGG
TTTGGTTCTGAGTACTGGCGCGTGTGTGGCGATGTTACGTCACTCCTTGT
GCGGCGGCATGGCAACTGGTGGGGGATCTACAAGGGCTCACACAAGCTGC
TCGAGCTGGTGGGCTGCCTGGACGATTCCCACGAGTGCGAGTTCCACCTC
CGGTGCAGCTGCTCGAGCTGGTGGGCTGCCTGGACGATTCCCACGAGTGC
GAGTTCCACCTCCGGTGCAGGATCCACGAGGCTGTGGACGTCTGGGGGGT
TGCAGATAGGCTCAAAGAGTACCTGCAAGCCAGAGATGATGCCTGATCCA
CGAGGCTGTGGACGTCTGGGGGGTTGCAGATAGGCTCAAAGAGTACCTGC
AAGCCAGAGATGATGCCT
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