mRNA_S-ischiensis_contig83.20011.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.20011.1
Unique NamemRNA_S-ischiensis_contig83.20011.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig83.20011.1 vs. uniprot
Match: A0A6H5KEI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI4_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 4.530e-6
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = -1 
Query:   40 DADRTYWEPSTLDAGALVSPALLKLKIELLALGLCLPEDWE 162
            +  RTYWEPS    G LVSP ++KLK+E+LA+ LCLP+ WE
Sbjct:  608 NTSRTYWEPSVAPVG-LVSPEMVKLKVEMLAVALCLPQQWE 647
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BLAST of mRNA_S-ischiensis_contig83.20011.1 vs. uniprot
Match: D8LBK0_ECTSI (Bromodomain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK0_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 4.660e-6
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = -1 
Query:   40 DADRTYWEPSTLDAGALVSPALLKLKIELLALGLCLPEDWE 162
            +  RTYWEPS    G LVSP ++KLK+E+LA+ LCLP+ WE
Sbjct: 2070 NTSRTYWEPSVAPVG-LVSPEMVKLKVEMLAVALCLPQQWE 2109
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.20011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KEI4_9PHAE4.530e-658.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBK0_ECTSI4.660e-658.54Bromodomain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:498046..498491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size447
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817325.721562-CDS-S-ischiensis_contig83:498045..4984891622817325.721562-CDS-S-ischiensis_contig83:498045..498489Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 498046..498489 +
1695741028.1169038-CDS-S-ischiensis_contig83:498045..4984891695741028.1169038-CDS-S-ischiensis_contig83:498045..498489Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 498046..498489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.20011.1prot_S-ischiensis_contig83.20011.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 498046..498489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.20011.1

>prot_S-ischiensis_contig83.20011.1 ID=prot_S-ischiensis_contig83.20011.1|Name=mRNA_S-ischiensis_contig83.20011.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=148bp
PLRRPGEGAVLLHLPVLGQAQPQRQQLNLELEQCRGHQRARVQGRRLPVG
AVGVVPRRRGRRCRRRRCRGSRSSALEAGPGGGRVPVRRPVQQVRGPGLG
SELPHDGVDVAAQPAAAAATGPGHASTAPGAPGVQVVRVQLHVGAHAK
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mRNA from alignment at S-ischiensis_contig83:498046..498491+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.20011.1 ID=mRNA_S-ischiensis_contig83.20011.1|Name=mRNA_S-ischiensis_contig83.20011.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=446bp|location=Sequence derived from alignment at S-ischiensis_contig83:498046..498491+ (Schizocladia ischiensis KU_0333)
CCACTGCGTCGGCCCGGGGAGGGGGCGGTCCTCCTCCACCTCCCAGTCCT
CGGGCAGGCACAGCCCCAGCGCCAGCAGCTCAATCTTGAGCTTGAGCAGT
GCCGGGGACACCAGCGCGCCCGCGTCCAGGGTCGACGGCTCCCAGTAGGT
GCGGTCGGCGTCGTCCCACGCCGCCGCGGCCGCCGCTGCCGCCGCCGCCG
CTGCCGGGGAAGCCGAAGCTCTGCTCTTGAGGCGGGCCCTGGCGGCGGCC
GAGTACCGGTCCGGCGGCCCGTACAGCAGGTGCGTGGCCCGGGTCTCGGC
AGCGAGCTCCCGCATGACGGCGTGGACGTCGCAGCGCAGCCAGCCGCCGC
CGCCGCCACCGGCCCCGGGCACGCTTCCACCGCCCCCGGGGCCCCTGGCG
TCCAGGTGGTCCGGGTCCAGCTCCACGTCGGAGCGCATGCGAAGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:498046..498491+

>mRNA_S-ischiensis_contig83.20011.1 ID=mRNA_S-ischiensis_contig83.20011.1|Name=mRNA_S-ischiensis_contig83.20011.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=888bp|location=Sequence derived from alignment at S-ischiensis_contig83:498046..498491+ (Schizocladia ischiensis KU_0333)
CCACTGCGTCGGCCCGGGGAGGGGGCGGTCCTCCTCCACCTCCCAGTCCT
CGGGCAGGCACAGCCCCAGCGCCAGCAGCTCAATCTTGAGCTTGAGCAGT
GCCGGGGACACCAGCGCGCCCGCGTCCAGGGTCGACGGCTCCCAGTAGGT
GCGGTCGGCGTCGTCCCACGCCGCCGCGGCCGCCGCTGCCGCCGCCGCCG
CTGCCGGGGAAGCCGAAGCTCTGCTCTTGAGGCGGGCCCTGGCGGCGGCC
GAGTACCGGTCCGGCGGCCCGTACAGCAGGTGCGTGGCCCGGGTCTCGGC
AGCGAGCTCCCGCATGACGGCGTGGACGTCGCAGCGCAGCCAGCCGCCGC
CGCCGCCACCGGCCCCGGGCACGCTTCCACCGCCCCCGGGGCCCCTGGCG
TCCAGGTGGTCCGGGTCCAGCTCCACGTCGGAGCGCATGCGAAGCCACTG
CGTCGGCCCGGGGAGGGGGCGGTCCTCCTCCACCTCCCAGTCCTCGGGCA
GGCACAGCCCCAGCGCCAGCAGCTCAATCTTGAGCTTGAGCAGTGCCGGG
GACACCAGCGCGCCCGCGTCCAGGGTCGACGGCTCCCAGTAGGTGCGGTC
GGCGTCGTCCCACGCCGCCGCGGCCGCCGCTGCCGCCGCCGCCGCTGCCG
GGGAAGCCGAAGCTCTGCTCTTGAGGCGGGCCCTGGCGGCGGCCGAGTAC
CGGTCCGGCGGCCCGTACAGCAGGTGCGTGGCCCGGGTCTCGGCAGCGAG
CTCCCGCATGACGGCGTGGACGTCGCAGCGCAGCCAGCCGCCGCCGCCGC
CACCGGCCCCGGGCACGCTTCCACCGCCCCCGGGGCCCCTGGCGTCCAGG
TGGTCCGGGTCCAGCTCCACGTCGGAGCGCATGCGAAG
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