mRNA_S-ischiensis_contig83.20004.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.20004.1
Unique NamemRNA_S-ischiensis_contig83.20004.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.20004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:432227..436586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size686
Cds size684
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.20004.1prot_S-ischiensis_contig83.20004.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 432228..436586 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817324.4446015-CDS-S-ischiensis_contig83:432227..4323381622817324.4446015-CDS-S-ischiensis_contig83:432227..432338Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 432228..432338 -
1695741027.4708762-CDS-S-ischiensis_contig83:432227..4323381695741027.4708762-CDS-S-ischiensis_contig83:432227..432338Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 432228..432338 -
1622817324.457886-CDS-S-ischiensis_contig83:433758..4338071622817324.457886-CDS-S-ischiensis_contig83:433758..433807Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 433759..433807 -
1695741027.4839125-CDS-S-ischiensis_contig83:433758..4338071695741027.4839125-CDS-S-ischiensis_contig83:433758..433807Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 433759..433807 -
1622817324.4690301-CDS-S-ischiensis_contig83:434704..4348681622817324.4690301-CDS-S-ischiensis_contig83:434704..434868Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 434705..434868 -
1695741027.4942214-CDS-S-ischiensis_contig83:434704..4348681695741027.4942214-CDS-S-ischiensis_contig83:434704..434868Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 434705..434868 -
1622817324.4805346-CDS-S-ischiensis_contig83:435781..4359291622817324.4805346-CDS-S-ischiensis_contig83:435781..435929Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 435782..435929 -
1695741027.5047696-CDS-S-ischiensis_contig83:435781..4359291695741027.5047696-CDS-S-ischiensis_contig83:435781..435929Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 435782..435929 -
1622817324.493384-CDS-S-ischiensis_contig83:436374..4365861622817324.493384-CDS-S-ischiensis_contig83:436374..436586Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 436375..436586 -
1695741027.5188706-CDS-S-ischiensis_contig83:436374..4365861695741027.5188706-CDS-S-ischiensis_contig83:436374..436586Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 436375..436586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.20004.1

>prot_S-ischiensis_contig83.20004.1 ID=prot_S-ischiensis_contig83.20004.1|Name=mRNA_S-ischiensis_contig83.20004.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=228bp
SSRGFGGGSGNVSSASLAGLRRDSSTVEESGGRRSPVTGRVSGRISPVGQ
STPLVSPILDKLLLPAAGWISGRRSPDPVAGSSGGHDVAEEVEEGRAGAV
SPADLDKAEDDRDEPDLETEPPKMQIFGQLGRSGSVAYWGAAQTKEKEMI
DDQEQEDTINEQEVLISDLQEQLNQHKDRVKFLQAELVHSRKLHSVKGLD
AVALAESEVLEEVEEQLEEQPERAPPSL
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mRNA from alignment at S-ischiensis_contig83:432227..436586-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.20004.1 ID=mRNA_S-ischiensis_contig83.20004.1|Name=mRNA_S-ischiensis_contig83.20004.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4360bp|location=Sequence derived from alignment at S-ischiensis_contig83:432227..436586- (Schizocladia ischiensis KU_0333)
AGCAGTCGAGGCTTTGGCGGCGGCAGCGGCAATGTCAGCAGCGCCAGCTT
GGCTGGTCTTCGCCGCGATTCATCAACGGTGGAGGAGTCCGGGGGACGCC
GGTCGCCTGTGACGGGGCGCGTCTCGGGGCGCATCTCCCCCGTGGGGCAA
TCCACCCCTCTGGTCTCCCCTATCCTTGACAAGCTGCTCCTGCCAGCGGC
GGGCTGGATAAGGTGTGTGCTCCTCCTTAGCACGTGACCGCCCCCGTGTG
TATGTGTGTGTGTGTGTGTGTGTGTGCGTGTAGTGCGACGAACATATGGA
CGGACCGTGCGGGGTAGAGTCGCCAGACCCGTGTGTGAATGCCCGTGTGG
GACTGACTCTGGGCAGGGCCGGGTTAGCACGGAGACTCGCTATGGCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTCTCGCTCTCTCGC
TCTCTCTGCCTTCATCCCTCCCTCCCTCCCTCCTGCTCCTTCGCTTCCTC
CCTCTCAACCTCTCTCCCTCCCCCCATCCCTCCCTCTCTCGCACCTGCCT
GATCATCAAAGGCTGCGGCATATACTTCCGAAGTATGTCCTCTTCCCTGA
TCTCCCCGCCTTGCCTCTCCATACCCCCCCCCCCCCCGGCCCTCCGGGAA
TGTGCAGCGGGCGCAGGTCGCCCGACCCAGTCGCCGGCAGTTCCGGTGGG
CACGACGTGGCGGAGGAAGTGGAGGAGGGCAGGGCGGGTGCTGTTTCCCC
TGCAGACTTGGACAAGGCGGAGGATGACCGAGACGAGCCTGACTTGGAGA
CGGAGGTATGGAGACTGAGAATGGAAGCGGTTGACGTTGATACTTTGAAG
CATGATGTCAAACCCACTCGGTTGTTTATCTTCTACTGTAGTATGTTCTT
TTAGTTTAGGGTAAATAGTACGTTGGATTTCGCATCACAGCGCACATCAC
GTCTCGCTCGCCGATGACTATGCCGCCACAAACCTGGTGCGGGGGGAGAG
GCAAACCTACTCTAGTTTTGGAGCAGCAAATGCATTACGTCAAATGCAGC
ATATCACGTCACGCGCTGATGGTTATGCCGCCGCAAACCGGGTGCGGGGA
GAAGCGCCGGCCCCGCGGGCCGCTGACGGTGCGTCGGTCAGGCTGAACCC
TGTTACCCCGGGGGTCCATATACGTATAGGATTTTAGTGACCAAGTCCAA
TTTAACAGGGGTAAAGGGTTAAGCCTTAGCGGGCAATGGTGCGCTGACTT
CATACTATGCACACACCCGGTCCTTATCGGAGCCCCGCAATCCTCCCAGG
CACCATAGTCCGCGTGCGTAGTTTCCAGGATGGCCTGTGTATACCTCGTG
GAGCGTTTCACGCGCGAGAGACACGCCTGCACTGTTGCGCAAGAAGTGAT
TGTCAAGCCATGCTCGGTTTTACCCTGGGCGGTATCTACTAGGAACTGCA
ATGGACGTGCGATACAGACTGCCGCTGCAAACTACCGTACTGTGCTGGTA
GGTACAATGCACTTTTTGCCTGCCCAGCCAGTTGGCCCCTCACGCTCGGA
AAGCCTTTGGGGCAGCCCTTTTTGACGTGCCGAGACTGAAACATTGATGA
ACCTTCCCGATCGGCCGGCCGCCGACCGCACCCTCCCCTGCCCCCCGCCT
TTGCCGCCCGCCCGGCCTCCCCACCTGTGTGCCCGCCTTGGTGCCACTGC
CGCCACCTGGACGGCCAGCCGCCGAAGATGCAAATCTTTGGGCAGCTGGG
GCGGTCGGGCTCGGTGGCCTACTGGGGCGCGGCACAGACCAAGGAGAAGG
AGATGATCGACGATCAGGAGCAGGAGGACACCATTAACGAGCAGGAGGTG
CTCATCAGCGACCTACAGGAGCAGCTCAACCAGTAAGTAGTGGTACGGGT
ATCCCACAGTATGTACTACGGTACTGTACAGTACACACTTTGGAAGTAGT
GTAGAGTATGTACCGTACAGCAGTACAGTAATCTGCAATTATCTACTTTG
TACCGTACAACGGGCAGGAGGTGCTCATCAGCGACCTGCAGGGGCAGCTC
AACCAGTACGTGGTGGTGCGGGCATCCCCAAGTGCGCACTATGTACTTCG
TAGTACTGTACTGTACTGTACGATTACACGCTTTGAAAGTAGTGTAGAGT
ATGCACTATTCAGTGGCACATTTATCTGGAATTCTCTACCGTAGTGTACA
TTGAGCGGGAGGCGCTCATCAGCGACCTCCAGGAGCAGCTCAGCTTGAAA
GGCCCTGATGGCGGCAAGTTGTCGCATGTCCGTATGTCTCCCAACGGCTC
TCGAGATGTTATGTGGCAATGTGATGTCTCGGAACCACTGCGTTTGTTCT
GCAAACGTCACATCGCCTCTCATCCCACAAAATTGATCACGCGTGAGTTT
GCCAACGGCCAGGCCTTGTTGTCAAGGCCTTCCCGTGGCAGCTACCGCTC
CAGCACCGGCAGAGACCGTTCCTCCACACCGGCCACGCCCACCGTTCTCA
CCCGTCACGCGTGAACCCTTCGAGGACGACTGCACACTTAACCATGGGAC
GTTAGTGAGTCATCATTGTACTGTTCAAGTATTAAACGGAACAACACAGG
GCGAGGTGCAGGCCACGTCACTACAAGACCTCAACAGTGGCCCTTCCTGA
GCTCGCCAGGGGAGATTTGTGCGGGCAAGGGGAGAAAGTACTGTTGAAAC
AGCTCCTCTGGGGGATAGCCAGATAGTATTAATCCCCCCCCCCCCCACCT
CGCACACGTGGTTTCACCCCCCGCTCCAGGCACAAAGACCGTGTCAAGTT
CCTGCAGGCGGAGCTGGTGCACAGCAGGGTGAGATTTTTCCTTCCAACTC
TTGTGGGAAAGTTTCAAGCTACAATAGCCCTTAGAGGCCGGCAGTGCGCA
TTTTCCTCGCTACTCTAGAGTAGATTCCTGTACAGTACAGTACAAGTAGT
GCTAAGAGGGAAAACACAGGGCAAGGTTCCGGCCGACCACGTCACTAAAT
ACCTCAACAGGGGCCCTTCCCTCAGCTCAACAGGGAGGGATTGTGTGGGG
AACGGGGGGGGGAGGAGGAGGAGCAGGAGGAGGTACTGTGCTGTCGTTTA
ACTCTTCCACACATCAACTACTCATAAGCACTTCAAGGTATACGGCACGC
TACTGTAGCTCTTGGTCCTCACTTCTGTACTACCATGCAGTAGCTAGTGC
AGTGGTACAGTCCGTTGACATACTCGTACTGTTTTAGGGTACGATACAGT
GAGTAGTCGAGTACTGTAGCAGTCCTTATTCAGTGTGGTAGTATAGATTG
CTGCTGTGCTGTGCTGTACTGTGCTGTACTGTCTTGCTGTACAACACTGT
ATTGTCTGTACTGTACTGTACATGATGTACCGTGCAAGGTACCACTTGAG
CGAGCTCCGTGAGGTTTGGGCAATGACTGAACGGACCCAGAGTGCACGTA
TTTTCGCTTCAAAGAAGCTGGTATTACACAGTACTACTACAGTACTACTA
CTACTACTACTACTACTACAGTACAGCCATACCAGCAGTACCCACACACG
TTACGGCAGCACTTGAAGTACGAGCACAATGGAAACACCGTTGTCCTCCG
TGGGGCAAACGTTGCCAACTCCACAAGAGGGTTGCGAGACTGTCGGGAGA
GACACGCACACACGCACACGCACGCGCACACACACATACACACACACACA
CACACACACACACACCGGGAAGACCCGTGGGGAGGCACATGCCTGTGTTT
CGGGCACCTTTGCAGGTGCTGTTTGCTGCAACACTCGTGTCTTGTGCCAG
CGTGGTTCGTAGCGGTCACAGCCTCGTAAGAACATTGTCGGCAAGTGAGA
GGCTCGCTGTACTGCGTTAGTCTCACCGTCTTCTGCAATCCCCCAAGTTC
GATGCGCGCTTCTTGACCCTACTTATCCCGCAAATGCCGTGGCGCCGCTC
CAGCCCCTGCCCGCGAACAAATCCGGGGGGGCTGTTCCAAGGGGCCTCGA
AATCCGAATCCATCGCCGTTGGTCAGTCTTCCACGACTATGTCAACACAA
CCAGCCCCAGTTACCATACGCGGTACCTTGCATATTCGATCAACGCAGTG
GGGGAGAGTGGAGGAAAAACACAAGCAAAAAAGGCCTAGAAAAATCTCCG
CTGGTTCTACTGGCCCGGCCCGGCCCCCGATCCAGCCGCCACAGCTTGTC
CCCCCCCCCCCCCCACGGGTGCCTCCCCTCCCGCACAACACCGAGCAGAA
ACTTCATTCGGTCAAGGGTCTGGATGCAGTGGCTCTCGCCGAATCCGAGG
TTCTAGAGGAGGTGGAAGAGCAGCTGGAAGAGCAGCCGGAGCGGGCCCCG
CCCTCCCTCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:432227..436586-

>mRNA_S-ischiensis_contig83.20004.1 ID=mRNA_S-ischiensis_contig83.20004.1|Name=mRNA_S-ischiensis_contig83.20004.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1368bp|location=Sequence derived from alignment at S-ischiensis_contig83:432227..436586- (Schizocladia ischiensis KU_0333)
AGCAGTCGAGGCTTTGGCGGCGGCAGCGGCAATGTCAGCAGCGCCAGCTT
GGCTGGTCTTCGCCGCGATTCATCAACGGTGGAGGAGTCCGGGGGACGCC
GGTCGCCTGTGACGGGGCGCGTCTCGGGGCGCATCTCCCCCGTGGGGCAA
TCCACCCCTCTGGTCTCCCCTATCCTTGACAAGCTGCTCCTGCCAGCGGC
GGGCTGGATAAGAGCAGTCGAGGCTTTGGCGGCGGCAGCGGCAATGTCAG
CAGCGCCAGCTTGGCTGGTCTTCGCCGCGATTCATCAACGGTGGAGGAGT
CCGGGGGACGCCGGTCGCCTGTGACGGGGCGCGTCTCGGGGCGCATCTCC
CCCGTGGGGCAATCCACCCCTCTGGTCTCCCCTATCCTTGACAAGCTGCT
CCTGCCAGCGGCGGGCTGGATAAGCGGGCGCAGGTCGCCCGACCCAGTCG
CCGGCAGTTCCGGTGGGCACGACGTGGCGGAGGAAGTGGAGGAGGGCAGG
GCGGGTGCTGTTTCCCCTGCAGACTTGGACAAGGCGGAGGATGACCGAGA
CGAGCCTGACTTGGAGACGGAGCGGGCGCAGGTCGCCCGACCCAGTCGCC
GGCAGTTCCGGTGGGCACGACGTGGCGGAGGAAGTGGAGGAGGGCAGGGC
GGGTGCTGTTTCCCCTGCAGACTTGGACAAGGCGGAGGATGACCGAGACG
AGCCTGACTTGGAGACGGAGCCGCCGAAGATGCAAATCTTTGGGCAGCTG
GGGCGGTCGGGCTCGGTGGCCTACTGGGGCGCGGCACAGACCAAGGAGAA
GGAGATGATCGACGATCAGGAGCAGGAGGACACCATTAACGAGCAGGAGG
TGCTCATCAGCGACCTACAGGAGCAGCTCAACCACCGCCGAAGATGCAAA
TCTTTGGGCAGCTGGGGCGGTCGGGCTCGGTGGCCTACTGGGGCGCGGCA
CAGACCAAGGAGAAGGAGATGATCGACGATCAGGAGCAGGAGGACACCAT
TAACGAGCAGGAGGTGCTCATCAGCGACCTACAGGAGCAGCTCAACCAGC
ACAAAGACCGTGTCAAGTTCCTGCAGGCGGAGCTGGTGCACAGCAGGGCA
CAAAGACCGTGTCAAGTTCCTGCAGGCGGAGCTGGTGCACAGCAGGAAAC
TTCATTCGGTCAAGGGTCTGGATGCAGTGGCTCTCGCCGAATCCGAGGTT
CTAGAGGAGGTGGAAGAGCAGCTGGAAGAGCAGCCGGAGCGGGCCCCGCC
CTCCCTCAAACTTCATTCGGTCAAGGGTCTGGATGCAGTGGCTCTCGCCG
AATCCGAGGTTCTAGAGGAGGTGGAAGAGCAGCTGGAAGAGCAGCCGGAG
CGGGCCCCGCCCTCCCTC
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