mRNA_S-ischiensis_contig83.20002.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.20002.1
Unique NamemRNA_S-ischiensis_contig83.20002.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig83.20002.1 vs. uniprot
Match: A0A836CG14_9STRA (SCP2 sterol-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG14_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.770e-14
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 3 
Query:    9 EALFALMAATVESDGPKMVRKVGASFRFKV-----GPEG----CWVVDLREGKGKVVKGDTMSMVDATVELSDEDFALICRGK 230
            + LF +MA  V ++G KMVR+VGA FRF V     G E      W+VDL+ G G + +GDT S  +AT+EL + +  LIC GK
Sbjct:    5 DVLFGIMAEKVAAEGTKMVRRVGAVFRFMVTIPASGGEAELQKVWLVDLKNGTGSIKEGDTESPAEATIELDEANLLLICSGK 87
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BLAST of mRNA_S-ischiensis_contig83.20002.1 vs. uniprot
Match: A0A8J2ANV9_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2ANV9_9DINO)

HSP 1 Score: 61.2 bits (147), Expect = 1.040e-9
Identity = 28/72 (38.89%), Postives = 42/72 (58.33%), Query Frame = 3 
Query:    9 EALFALMAATVESDGPKMVRKVGASFRFKVGPEGCWVVDLREGKGKVVKGDTMSMVDATVELSDEDFALICR 224
            +A+FA +   VE+DG K+V+   A F FK+     W+VDL+ GKG V KG+     D T+ + D D  + C+
Sbjct:    3 DAIFAQIQKAVETDGEKLVKSAKAVFCFKIKEGNTWLVDLKNGKGSVTKGE--GKADCTITIGDADLVINCK 72
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BLAST of mRNA_S-ischiensis_contig83.20002.1 vs. uniprot
Match: A0A7S0DM98_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DM98_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 7.190e-9
Identity = 25/79 (31.65%), Postives = 48/79 (60.76%), Query Frame = 3 
Query:    3 ETEALFALMAATVESDGPKMVRKVGASFRFKVGPEG----CWVVDLREGKGKVVKGDTMSMVDATVELSDEDFALICRG 227
            +++ +FALM   +++ G  +V+K+ A FRF +  +G     W+VDL+ G GK+ +    +    T+++SD +FA + +G
Sbjct:    9 KSDKIFALMQMGIKAQGEDLVKKIKAVFRFDITKKGKTVKYWLVDLKNGSGKIEEAKKTTKAQCTIKISDRNFAKLMKG 87
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BLAST of mRNA_S-ischiensis_contig83.20002.1 vs. uniprot
Match: A0A8J1ZYN2_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1ZYN2_9DINO)

HSP 1 Score: 55.8 bits (133), Expect = 3.420e-8
Identity = 25/74 (33.78%), Postives = 43/74 (58.11%), Query Frame = 3 
Query:    6 TEALFALMAATVESDGPKMVRKVGASFRFKVGPEGCWVVDLREGKGKVVKGDTMSMVDATVELSDEDFALICRG 227
            ++A+F  +   VE+DG  +V+K+ A F FK+     W+V+L++GKG + KG+     D T+ + D D   +  G
Sbjct:    4 SDAIFQGIQKAVEADGEALVKKMKAIFCFKIKDGSTWLVNLKDGKGSITKGE--GKADCTITIGDADLVAMASG 75
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BLAST of mRNA_S-ischiensis_contig83.20002.1 vs. uniprot
Match: A0A7S3Z7J8_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z7J8_9EUKA)

HSP 1 Score: 54.7 bits (130), Expect = 1.180e-7
Identity = 26/80 (32.50%), Postives = 48/80 (60.00%), Query Frame = 3 
Query:    3 ETEALFALMAATVESDGPKMVRKVGASFRFKVGPEG----CWVVDLREGKGKVVKGDTMSMVDATVELSDEDFALICRGK 230
            ++ A+F LM   +++  P++V+K+ A FRF +         W+VDL+ G GKV   DT +  +  ++L+D++F  + +GK
Sbjct:   11 KSTAIFNLMQQGLKAQAPQLVKKIKAVFRFDIIKGSKVLKSWLVDLKNGVGKVEPVDTKTKAECVIKLTDKNFIKLMKGK 90
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BLAST of mRNA_S-ischiensis_contig83.20002.1 vs. uniprot
Match: A0A5D6XT23_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XT23_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.950e-7
Identity = 27/72 (37.50%), Postives = 37/72 (51.39%), Query Frame = 3 
Query:   15 LFALMAATVESDGPKMVRKVGASFRFKVGPEGCWVVDLREGKGKVVKGDTMSMVDATVELSDEDFALICRGK 230
            +FALMA  V+  GP +V KV    +F V   G W+VDL+ G GKV         D  + LS+ +F  +   K
Sbjct:    9 VFALMAQAVDEVGPTLVPKVKGVIKFDVTGAGTWLVDLKNGSGKVAPAAAADKADIVITLSEANFLALIENK 80
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BLAST of mRNA_S-ischiensis_contig83.20002.1 vs. uniprot
Match: A0A2D4BN54_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BN54_PYTIN)

HSP 1 Score: 53.5 bits (127), Expect = 1.320e-6
Identity = 25/72 (34.72%), Postives = 37/72 (51.39%), Query Frame = 3 
Query:   15 LFALMAATVESDGPKMVRKVGASFRFKVGPEGCWVVDLREGKGKVVKGDTMSMVDATVELSDEDFALICRGK 230
            +F +M A V   GP +V KV  + +F V   G W+VDL+ G GKV         D T+ +S+ +F  +   K
Sbjct:    8 VFEVMTAAVGELGPSLVSKVKGTIKFDVTGAGIWLVDLKNGNGKVASATAGDKADLTITISEANFLALIDNK 79
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BLAST of mRNA_S-ischiensis_contig83.20002.1 vs. uniprot
Match: K3X5T6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X5T6_GLOUD)

HSP 1 Score: 53.1 bits (126), Expect = 1.850e-6
Identity = 26/72 (36.11%), Postives = 37/72 (51.39%), Query Frame = 3 
Query:   15 LFALMAATVESDGPKMVRKVGASFRFKVGPEGCWVVDLREGKGKVVKGDTMSMVDATVELSDEDFALICRGK 230
            +F LMA  V+  GP++V KV    +F V   G W+VDL+ G GKV         D  + LS+ +F  +   K
Sbjct:    8 VFELMAKAVDEVGPQLVPKVKGVIKFDVTGAGFWIVDLKNGNGKVAAATEADKSDIVITLSEANFLQLIDNK 79
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BLAST of mRNA_S-ischiensis_contig83.20002.1 vs. uniprot
Match: B3S4X7_TRIAD (Sterol carrier protein 2 n=2 Tax=Trichoplax TaxID=10227 RepID=B3S4X7_TRIAD)

HSP 1 Score: 52.0 bits (123), Expect = 6.250e-6
Identity = 27/80 (33.75%), Postives = 45/80 (56.25%), Query Frame = 3 
Query:    6 TEALFALMAATVESDGPKMVRKVGASFRFKVGP---EGC--WVVDLREGKGKVVKGDTMSMVDATVELSDEDFALICRGK 230
            +E +F  +   V+ +GP MV KV A FRFK+     +G   W ++L++G G + +G      D T+ ++D+DF  +  GK
Sbjct:  419 SETVFERIKENVDKNGPSMVNKVKAVFRFKITDIKSKGTKFWTLNLKDGSGSLTEGQE-GKTDCTITMADKDFVQLSTGK 497
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BLAST of mRNA_S-ischiensis_contig83.20002.1 vs. uniprot
Match: A0A8K1FIR5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FIR5_PYTOL)

HSP 1 Score: 51.2 bits (121), Expect = 9.330e-6
Identity = 25/72 (34.72%), Postives = 36/72 (50.00%), Query Frame = 3 
Query:   15 LFALMAATVESDGPKMVRKVGASFRFKVGPEGCWVVDLREGKGKVVKGDTMSMVDATVELSDEDFALICRGK 230
            +F +M   V   GP +V KV  + +F V     W+VDL+ G GKV K       D T+ LS+ +F  +   K
Sbjct:    7 VFDVMGKAVGELGPSLVSKVKGTIKFDVTGASIWLVDLKNGNGKVTKSTPEEKADITITLSEANFLKLIDNK 78
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.20002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A836CG14_9STRA1.770e-1445.78SCP2 sterol-binding domain-containing protein n=1 ... [more]
A0A8J2ANV9_9DINO1.040e-938.89Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A7S0DM98_9EUKA7.190e-931.65Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A8J1ZYN2_9DINO3.420e-833.78Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A7S3Z7J8_9EUKA1.180e-732.50Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A5D6XT23_9STRA1.950e-737.50Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2D4BN54_PYTIN1.320e-634.72Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
K3X5T6_GLOUD1.850e-636.11Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
B3S4X7_TRIAD6.250e-633.75Sterol carrier protein 2 n=2 Tax=Trichoplax TaxID=... [more]
A0A8K1FIR5_PYTOL9.330e-634.72Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:422573..425734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size232
Cds size231
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.20002.1prot_S-ischiensis_contig83.20002.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 422573..425733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817324.392668-CDS-S-ischiensis_contig83:422572..4226431622817324.392668-CDS-S-ischiensis_contig83:422572..422643Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 422573..422643 +
1695741027.430116-CDS-S-ischiensis_contig83:422572..4226431695741027.430116-CDS-S-ischiensis_contig83:422572..422643Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 422573..422643 +
1622817324.4037366-CDS-S-ischiensis_contig83:423976..4240781622817324.4037366-CDS-S-ischiensis_contig83:423976..424078Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 423977..424078 +
1695741027.4444015-CDS-S-ischiensis_contig83:423976..4240781695741027.4444015-CDS-S-ischiensis_contig83:423976..424078Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 423977..424078 +
1622817324.4144335-CDS-S-ischiensis_contig83:425675..4257331622817324.4144335-CDS-S-ischiensis_contig83:425675..425733Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 425676..425733 +
1695741027.457841-CDS-S-ischiensis_contig83:425675..4257331695741027.457841-CDS-S-ischiensis_contig83:425675..425733Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 425676..425733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.20002.1

>prot_S-ischiensis_contig83.20002.1 ID=prot_S-ischiensis_contig83.20002.1|Name=mRNA_S-ischiensis_contig83.20002.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=77bp
GRRRRSLRSWPPRWSPTGPKWSGRWGPPFASKLAPRAAGWWICGRGRGRL
SRVTPCPWWTPRWSSPTRTLLSSAGGS
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mRNA from alignment at S-ischiensis_contig83:422573..425734+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.20002.1 ID=mRNA_S-ischiensis_contig83.20002.1|Name=mRNA_S-ischiensis_contig83.20002.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3162bp|location=Sequence derived from alignment at S-ischiensis_contig83:422573..425734+ (Schizocladia ischiensis KU_0333)
GGGAGACGGAGGCGCTCTTTGCGCTCATGGCCGCCACGGTGGAGTCCGAC
GGGCCCAAAATGGTCCGGAAGGTGCGTGGAGAGAATTACCCAACATGTAA
GTAGGTACAAGAAGTGAGCCTTCGAGGATTTTGTAAGCTACGCTAACCTG
TCTGCTCCGTCTTGACCGAGGCGCGTGGTCAATGGTCTCGGGACTACGGC
AAGCACCACGTGAGTACTCGAAGCATATGTGCTCGAGTATATATACTTCC
GGAAGTAGTCTGTAGGGTTTTAGCGAGGGATCAGCGTGCGGTTGTTCGGT
CTGATGTGACGTGATGTGATGTGATGTGTACACCAACGTACTGTCGTTTT
AACATCATGTCGCGTCGCTTCTCGCCTTTCAAACTGTCCAAGTATATACA
TATGTACTCACGTGGTGCTTGCCGTAGTCCCGAGACCATTGACCCCGCGC
CTCGTGAGAGACGGAGCGTGCATGTGATGTGATATGATATGATTCGATAT
GATGTGATGTGATGTGCACTCTAAAGCCCTGTAGTTTGACATCACATCAC
ATCATTCCTCGTTCGAGACGGAGCAGGTTGGGACTAGTAGTTGGGAGACT
ACAATCGGAAGTTGCACTAGTGTACTTCGACGTCTTCAAAGTGCGAAGTA
CTTCATATATATGTATATATAAGTGTGTGTACTCACGCTGGACTTGTCGT
AGTCCCAAAGACCATTGGCCCCTATAGCGCCCCGACCGCGACAGAGCAGG
CCCCCTCCATATATGTAAGCACTCGTACATAGAGTACTGCAAGTGCAAGG
ACTTGGACGGTAGGGCAGCACCTTCATTTTTAGCCCGGAAGAGGGTGCAC
GGGCGATGGTGGGTTACAACCTATACAAGTACTGCCTGAAAGAGTACGTG
AGCTGTACTTAGGGCATTTTTGGCTAGCTCAAGGTGAGCATGAGCCCTGC
ATATGTCACAACAACTACAGCACTTGTTGTGCGAGAGTGGGGCACCTATT
GTAGTATAAGTATCGCCCTTTTGGACAAGCACCAACTTAATATATCCCGG
TATTATACTTTGAACTATGCCAGGGGAGGGAGGGGTCCTGCTCCGTCTCG
ACTGAGGCGCGGGGTCAATGGTCTCGGGACTACGGCAAGCACCACGTGAG
TACACATATATACTCGTACACTACTACGTAGTATATGAGTACTCATTGGC
TTTTCTTGCAACACAACCTTGCGTGCTTGGTCGACAGCCCTAAGTCAAAA
CTTCGAGTTTGCCCTCCGACCTGGCACGTGGACATACTTTGTGCTGGGCT
TCACGGTCAACGGGATGCCCCCCATCCTCCTCATCCCTTCGTCTCACATC
GACCCCACCCCCGCCCCCCCCCACCCCCGGCCACGCCGCGAACGCCTGTC
CCAGGTGGGGGCCTCCTTTCGCTTCAAAGTTGGCCCCGAGGGCTGCTGGG
TGGTGGATCTGCGGGAGGGGAAGGGGAAGGTTGTCAAGGGTGACACCATG
TCCATGGTCAGTCAATCTCACACACGTGTGAATGTACCTCGCTACGTTTA
TGTGAATCACCACGTCCATGGTGGGTCGGTGTTTCCGTTTCCCGTTGTCC
ACGGGCCAGCAGAGGCTGTTCAATGTGTCCGTGTTTCACGTCCACGGTGG
CTCGGTGTTTCCATTTTCCGTCGTCTAGTATACGGGCCAGCAAAGGCCGT
TCAATGTCCATACTTCTAACGCCTTTACTTAAGCCAAAGCTGGGTCTCGA
CAGAGGCGCATGGTCAATGGCCTCGGGACTACGGCAACCACCACGTGAGT
GAGTAGAGTACATATACAAAGTTGGGTGGGTGGGTGGGTGGGTTGATGTC
GCTTGTGCTCCTGCCGTCTATACGGGGCAGCACAAAAGGCCGTTCATGCT
TCTGACTCTCTAGCCGAGACTGGGGCCCGTGAGGTTGGGGCCGGCGGGTG
GGTTGATGTTTCCGATATCTGTCGTCTCTGGGGCGGGTAAAGGGCGTTCA
CGCTTGGAACACTTTAGGCCGCGGTTGTGGCGCGTGGGTGAGCGGGTGGG
TGGTGTGGTACAGTACAGTCCACTGTGTTTCCGTTTAGTTGCGCCGTTCT
TAGGAGCGGCCAGGCTGTGCTCAGCCCTTCTGCCTACACCCTCTATCACG
CCATAGAGCACTTGAAGCGCGTATTTCAAAGACAAACATTTGAGCCCCAG
TTTCGCGCAGCGCCTATGCAAGTACATTGCCGGCGAGTGCACTACAGTAG
AGTACAGTAGTACCTCTGCTGTGGGGTTGCGCTATGCACCGTGCCTTCCA
ATAAGTAGTACTTCGAAGTATGTGCTCTCCTTGTACGGCACTTGAACGTG
CCACGAGTGCTGCTATAGGAGTGCAGCGCTACTGTATTGTACTTCGTACA
GTACTTCACCACCACTACTACTGTAGAAGTATATATATATACTCACGTGG
TGCTTGCCGTAGTCCCGAGACCATTGACCCCGCGCCTCATTCGAGACGGA
GCAGCGTGTAGAAGTACAGTACATATGCACCATCCCGACAAAACAGGGAC
GCGCGGCCAATGGCCGAGAGGCTATTGCGCCCTGCGGGGGTACTACTGGC
CGACCCTGCAGCAAGTACAGTAGTGGAAGTAGTATGAAGTGTGTACGAGT
ACTGCAGTACCACATGCTAGTCGCACAACAGGCCAACTCCCGTCTTCCAG
TGCGCCGCAATCCTCCCCCGCTTTTAACGGCCCAGGACGGCCACGACGCG
TGCCGCTTCCTCCGCCGGGCCGGCCCCCCGTTTCCCACCAGGCAGTGATG
GGATATCTAAGCAAGTCAACCTACGAAGTATTTATCGACAGTACTGATCT
ATATCTATCGATAGTCGATATTCGACAGTTTGACCCACACTAAATCCAAG
TACTATCAGGAACAACACGGGGCGAGGTAATTTTTGGCATGAAGATAAAA
AGCGAGTGGAAAAGAGCAGGTGTTCCTACTTACGCGAGTTCAGGGCCCCC
TGCCCCGGAAGCCCGTATTTTCACTCGCCTTCAGTAACGCCTCCCATAAA
ATCGGTCGCGCCCGGTAACTATCTACTGATCGATATTCCATCACTGCCGC
CAGGTGGACGCCACGGTGGAGCTCTCCGACGAGGACTTTGCTCTCATCTG
CCGGGGGAAGCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:422573..425734+

>mRNA_S-ischiensis_contig83.20002.1 ID=mRNA_S-ischiensis_contig83.20002.1|Name=mRNA_S-ischiensis_contig83.20002.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=462bp|location=Sequence derived from alignment at S-ischiensis_contig83:422573..425734+ (Schizocladia ischiensis KU_0333)
GGGAGACGGAGGCGCTCTTTGCGCTCATGGCCGCCACGGTGGAGTCCGAC
GGGCCCAAAATGGTCCGGAAGGGGAGACGGAGGCGCTCTTTGCGCTCATG
GCCGCCACGGTGGAGTCCGACGGGCCCAAAATGGTCCGGAAGGTGGGGGC
CTCCTTTCGCTTCAAAGTTGGCCCCGAGGGCTGCTGGGTGGTGGATCTGC
GGGAGGGGAAGGGGAAGGTTGTCAAGGGTGACACCATGTCCATGGTGGGG
GCCTCCTTTCGCTTCAAAGTTGGCCCCGAGGGCTGCTGGGTGGTGGATCT
GCGGGAGGGGAAGGGGAAGGTTGTCAAGGGTGACACCATGTCCATGGTGG
ACGCCACGGTGGAGCTCTCCGACGAGGACTTTGCTCTCATCTGCCGGGGG
AAGCGTGGACGCCACGGTGGAGCTCTCCGACGAGGACTTTGCTCTCATCT
GCCGGGGGAAGC
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