mRNA_S-ischiensis_contig83.19999.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19999.1
Unique NamemRNA_S-ischiensis_contig83.19999.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig83.19999.1 vs. uniprot
Match: A0A835YSI6_9STRA (14-3-3-like protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSI6_9STRA)

HSP 1 Score: 345 bits (885), Expect = 6.070e-115
Identity = 173/239 (72.38%), Postives = 206/239 (86.19%), Query Frame = 2 
Query:   47 MDGNGHVYMARLAEQAERFHDMVQSMKEAAAVPREMSVEERNLLSVAYKNMVGACRASWRVISTIEQKCEPEKLPLVRSYRQKIEKELSESCSGVISMVEGSLIPHCTSAEGKVFFYKMAGDYERYLAEFQQGDARKESSEKALEAYQNASSCAKEDLPPTHPIRLGLALNFSVFYYEIMSSPERACSLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGDQDDDAPD 763
            MD +  VY A+LAEQAERF +MV  MK+ +  P+E+SVEERNLLSVAYKN++GA RASWRVIS+IEQK EPEKLPL+R Y++KIE EL E C+ ++ ++E  LIP+ ++ EGKVF+YKM GDY RYL+EFQ  DARKESS+KALEAYQ+A+  + +DLPPTHPIRLGLALNFSVFYYEI++SPERAC+LAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQG+ D+   D
Sbjct:    1 MDRSALVYQAKLAEQAERFDEMVSFMKQVSVQPQELSVEERNLLSVAYKNVIGARRASWRVISSIEQKGEPEKLPLIRDYKKKIETELEEICTEILGIIENELIPNSSATEGKVFYYKMKGDYHRYLSEFQAHDARKESSDKALEAYQHATEWSHQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEGDEAGAD 239
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BLAST of mRNA_S-ischiensis_contig83.19999.1 vs. uniprot
Match: A0A1Z5JP80_FISSO (14-3-3 protein epsilon n=4 Tax=Bacillariophycidae TaxID=33850 RepID=A0A1Z5JP80_FISSO)

HSP 1 Score: 328 bits (840), Expect = 3.320e-108
Identity = 162/238 (68.07%), Postives = 198/238 (83.19%), Query Frame = 2 
Query:   47 MDGNGHVYMARLAEQAERFHDMVQSMKEAAAVPREMSVEERNLLSVAYKNMVGACRASWRVISTIEQKCEPEKLPLVRSYRQKIEKELSESCSGVISMVEGSLIPHCTSAEGKVFFYKMAGDYERYLAEFQQGDARKESSEKALEAYQNASSCAKEDLPPTHPIRLGLALNFSVFYYEIMSSPERACSLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGDQDDDAP 760
            MD    VY A+LAEQAERF +MV  MK+ A  P+E++VEERNLLSVAYKN++G+ RASWRV+++IEQK +P+K+ +++ Y+ KIE EL E C+ ++S++E SLIP+ TS E KVF+YKM GDY RYL+EFQ GD RKES+  AL+AYQ AS  A  DLPPTHPIRLGLALNFSVFYYEI++SP++AC +AKQAFDDAIAELDTL+EESYKDSTLIMQLLRDNLTLWTSDQ + DD  P
Sbjct:    1 MDREALVYKAKLAEQAERFDEMVSDMKDVARQPQELTVEERNLLSVAYKNVIGSRRASWRVVTSIEQKGDPDKMTIIKDYKAKIETELVEICNDILSIIEDSLIPNSTSEEAKVFYYKMKGDYHRYLSEFQVGDTRKESASAALDAYQAASGIASSDLPPTHPIRLGLALNFSVFYYEILNSPDKACQIAKQAFDDAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSDQAEGDDAEP 238
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BLAST of mRNA_S-ischiensis_contig83.19999.1 vs. uniprot
Match: A0A7S1ZMH4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZMH4_TRICV)

HSP 1 Score: 327 bits (837), Expect = 1.480e-107
Identity = 168/247 (68.02%), Postives = 199/247 (80.57%), Query Frame = 2 
Query:   47 MDGNGHVYMARLAEQAERFHDMVQSMKEAAAVPREMSVEERNLLSVAYKNMVGACRASWRVISTIEQKCEPEKLPLVRSYRQKIEKELSESCSGVISMVEGSLIPHCTSAEGKVFFYKMAGDYERYLAEFQQGDARKESSEKALEAYQNASSCAKEDLPPTHPIRLGLALNFSVFYYEIMSSPERACSLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGDQDDDAPDGNAGPEEG 787
            MD +  VY A+LAEQAERF DMV  MKE A  P+E++VEERNLLSVAYKN++G+ RASWRV+++IEQK +PEKLP ++ Y+ KIE EL + C  ++ ++E SLIP+ +S E KVF+YKM GDY RYL+EFQ G ARKES+  AL+AYQ AS  A  DLPPTHPIRLGLALNFSVFYYEI++SP+RAC +AKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSD   + D A     G EEG
Sbjct:   14 MDRDSLVYKAKLAEQAERFDDMVADMKEVAQQPQELTVEERNLLSVAYKNVIGSRRASWRVVTSIEQKGDPEKLPTIKDYKAKIEGELVQVCGDILGIIESSLIPNSSSEEAKVFYYKMKGDYHRYLSEFQTGTARKESASAALDAYQAASGVASADLPPTHPIRLGLALNFSVFYYEILNSPDRACHIAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDNAGEADGA---GQGEEEG 257
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BLAST of mRNA_S-ischiensis_contig83.19999.1 vs. uniprot
Match: A0A7S1GIM8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GIM8_CYCTE)

HSP 1 Score: 326 bits (836), Expect = 1.650e-107
Identity = 162/239 (67.78%), Postives = 198/239 (82.85%), Query Frame = 2 
Query:   47 MDGNGHVYMARLAEQAERFHDMVQSMKEAAAVPREMSVEERNLLSVAYKNMVGACRASWRVISTIEQKCEPEKLPLVRSYRQKIEKELSESCSGVISMVEGSLIPHCTSAEGKVFFYKMAGDYERYLAEFQQGDARKESSEKALEAYQNASSCAKEDLPPTHPIRLGLALNFSVFYYEIMSSPERACSLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGDQDDDAPD 763
            MD    VY A+LAEQAERF +MV  MKE A  P+E++VEERNLLSVAYKN++G+ RASWRV+++IEQK EP+K+ +++ Y+ KIE EL E C+ ++ +++ SLIP+ TS E KVF+YKM GDY RYL+EFQ GDARK S+  AL+AYQ AS  A  DLPPTHPIRLGLALNFSVFYYEI++SP++AC +AKQAFDDAIAELDTL+EESYKDSTLIMQLLRDNLTLWTSDQ  + DD P+
Sbjct:    6 MDRESLVYKAKLAEQAERFDEMVTDMKEVAKQPQELTVEERNLLSVAYKNVIGSRRASWRVVTSIEQKGEPDKMTIIKDYKAKIESELVEICNDILGIIDESLIPNSTSEEAKVFYYKMKGDYHRYLSEFQIGDARKSSASSALDAYQAASGIASSDLPPTHPIRLGLALNFSVFYYEILNSPDQACQIAKQAFDDAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSDQTAEADDGPE 244
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BLAST of mRNA_S-ischiensis_contig83.19999.1 vs. uniprot
Match: A0A7S1H1R2_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H1R2_9STRA)

HSP 1 Score: 327 bits (837), Expect = 1.760e-107
Identity = 163/233 (69.96%), Postives = 197/233 (84.55%), Query Frame = 2 
Query:   65 VYMARLAEQAERFHDMVQSMKEAAAVPREMSVEERNLLSVAYKNMVGACRASWRVISTIEQKCEPEKLPLVRSYRQKIEKELSESCSGVISMVEGSLIPHCTSAEGKVFFYKMAGDYERYLAEFQQGDARKESSEKALEAYQNASSCAKEDLPPTHPIRLGLALNFSVFYYEIMSSPERACSLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGDQDDDAPD 763
            VY A+LAEQAERF +MV  MKE A  P+E++VEERNLLSVAYKN++GA RASWRV+++IEQK EP+KLP ++ Y+ KIE EL + C+ ++S++E SLI + TS E KVF+YKM GDY RYL+EFQ GD+RKES+  AL+AYQ AS  A  DLPPTHPIRLGLALNFSVFYYEI++SP++AC++AKQAFDDAIAELDTL+EESYKDSTLIMQLLRDNLTLWTSDQ     DAP+
Sbjct:   24 VYKAKLAEQAERFDEMVTDMKEVARQPQELTVEERNLLSVAYKNVIGARRASWRVVTSIEQKGEPDKLPTIKDYKAKIENELVDICNDILSIIEESLIRNSTSEEAKVFYYKMKGDYHRYLSEFQAGDSRKESATSALDAYQAASRIASSDLPPTHPIRLGLALNFSVFYYEILNSPDKACNIAKQAFDDAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSDQAADAGDAPE 256
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BLAST of mRNA_S-ischiensis_contig83.19999.1 vs. uniprot
Match: A0A7S1CZ22_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CZ22_CYCTE)

HSP 1 Score: 325 bits (832), Expect = 5.980e-107
Identity = 159/224 (70.98%), Postives = 193/224 (86.16%), Query Frame = 2 
Query:   65 VYMARLAEQAERFHDMVQSMKEAAAVPREMSVEERNLLSVAYKNMVGACRASWRVISTIEQKCEPEKLPLVRSYRQKIEKELSESCSGVISMVEGSLIPHCTSAEGKVFFYKMAGDYERYLAEFQQGDARKESSEKALEAYQNASSCAKEDLPPTHPIRLGLALNFSVFYYEIMSSPERACSLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQ 736
            VY A+LAEQAERF +MV  MKE A  P+E++VEERNLLSVAYKN++GA RASWRV+++IEQK E +K+P+++ Y+ KIE+EL E C+ ++ ++E SLIP+ TS E KVF++KM GDY RYL+EFQ GDARK S+  AL+AY+ AS  A  DLPPTHPIRLGLALNFSVFYYEI++SP+RACS+AKQAFDDAIAELDTL+EESYKDSTLIMQLLRDNLTLWTSDQ
Sbjct:    8 VYKAKLAEQAERFEEMVSDMKEVAKQPQELTVEERNLLSVAYKNVIGARRASWRVVTSIEQKAEQDKIPVIKDYKTKIERELIEICNDILGIIEESLIPNSTSEEAKVFYFKMKGDYHRYLSEFQVGDARKASASSALDAYRAASGIASSDLPPTHPIRLGLALNFSVFYYEILNSPDRACSIAKQAFDDAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSDQ 231
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BLAST of mRNA_S-ischiensis_contig83.19999.1 vs. uniprot
Match: B8BX06_THAPS (14-3-3-like protein n=3 Tax=Thalassiosirales TaxID=33847 RepID=B8BX06_THAPS)

HSP 1 Score: 324 bits (830), Expect = 1.200e-106
Identity = 164/246 (66.67%), Postives = 200/246 (81.30%), Query Frame = 2 
Query:   47 MDGNGHVYMARLAEQAERFHDMVQSMKEAAAVPREMSVEERNLLSVAYKNMVGACRASWRVISTIEQKCEPEKLPLVRSYRQKIEKELSESCSGVISMVEGSLIPHCTSAEGKVFFYKMAGDYERYLAEFQQGDARKESSEKALEAYQNASSCAKEDLPPTHPIRLGLALNFSVFYYEIMSSPERACSLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGDQDDDAPDGNAGPEE 784
            MD +  VY A+LAEQAERF +MV  MKE A  P+E++VEERNLLSVAYKN++G+ RASWRV+++IEQK + +K+ +++ Y+ KIE EL + C+ ++S++E SLIP+ TS E KVF+YKM GDY RYL+EFQQGD RK S+  AL+AYQ+A+  A  DLPPTHPIRLGLALNFSVFYYEI++SP+RAC +AKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQ      A D  AG  E
Sbjct:    1 MDRDSLVYKAKLAEQAERFDEMVSDMKEVARQPQELTVEERNLLSVAYKNVIGSRRASWRVVTSIEQKGDADKMSIIKDYKAKIENELCDICNDILSIIEESLIPNSTSEEAKVFYYKMKGDYHRYLSEFQQGDVRKASASAALDAYQSATEVASSDLPPTHPIRLGLALNFSVFYYEILNSPDRACHIAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQ------AADAEAGEPE 240
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BLAST of mRNA_S-ischiensis_contig83.19999.1 vs. uniprot
Match: A0A1E7FAR9_9STRA (14-3-3 protein n=3 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FAR9_9STRA)

HSP 1 Score: 323 bits (829), Expect = 1.530e-106
Identity = 160/234 (68.38%), Postives = 198/234 (84.62%), Query Frame = 2 
Query:   47 MDGNGHVYMARLAEQAERFHDMVQSMKEAAAVPREMSVEERNLLSVAYKNMVGACRASWRVISTIEQKCEPEKLPLVRSYRQKIEKELSESCSGVISMVEGSLIPHCTSAEGKVFFYKMAGDYERYLAEFQQGDARKESSEKALEAYQNASSCAKEDLPPTHPIRLGLALNFSVFYYEIMSSPERACSLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGDQD 748
            M+ +  VY A+LAEQAERF +MVQ MKE A  P+E++VEERNLLSVAYKN++G+ RASWRV+++IEQK + +K+ +++ Y+ KIE EL E C+ ++ ++E SLIP+ TS E KVF+YKM GDY RYL+EFQ GD RKES+  AL+AYQ AS  A+ DLPPTHPIRLGLALNFSVFYYEI+++P++ACS+AKQAFDDAIAELDTL+EESYKDSTLIMQLLRDNLTLWTSDQ D D
Sbjct:    1 MERDSLVYKAKLAEQAERFDEMVQDMKEVAKQPQELTVEERNLLSVAYKNVIGSRRASWRVVTSIEQKGDSDKMEIIKDYKSKIECELVEICNDILGIIEESLIPNSTSEEAKVFYYKMKGDYHRYLSEFQTGDTRKESAGAALDAYQAASGIAQSDLPPTHPIRLGLALNFSVFYYEILNAPDKACSIAKQAFDDAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSDQADAD 234
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BLAST of mRNA_S-ischiensis_contig83.19999.1 vs. uniprot
Match: A0A7S0GLL5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GLL5_9STRA)

HSP 1 Score: 323 bits (827), Expect = 6.560e-106
Identity = 161/246 (65.45%), Postives = 203/246 (82.52%), Query Frame = 2 
Query:   47 MDGNGHVYMARLAEQAERFHDMVQSMKEAAAVPREMSVEERNLLSVAYKNMVGACRASWRVISTIEQKCEPEKLPLVRSYRQKIEKELSESCSGVISMVEGSLIPHCTSAEGKVFFYKMAGDYERYLAEFQQGDARKESSEKALEAYQNASSCAKEDLPPTHPIRLGLALNFSVFYYEIMSSPERACSLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGDQDDDAPDGNAGPEE 784
            MD +  VY A+LAEQAERF +MV  MK+ A  P+E++VEERNLLSVAYKN++G+ RASWRV+++IEQK + +K+ ++R Y+ KIE+EL   C+ ++S++E SLIP+ +S E KVF+YKM GDY RYL+EFQQ + RKES+  AL+AYQ AS+ A  DLPPTHPIRLGLALNFSVFYYEI++SP++AC +AK+AFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSD G ++D AP  +   EE
Sbjct:   17 MDRDILVYKAKLAEQAERFDEMVSDMKDVARQPQELTVEERNLLSVAYKNVIGSRRASWRVVTSIEQKGDADKMTIIRDYKNKIEEELVNICNDILSIIEDSLIPNSSSQEAKVFYYKMKGDYHRYLSEFQQAETRKESASNALDAYQAASTIATADLPPTHPIRLGLALNFSVFYYEILNSPDKACEIAKKAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTGAENDGAPPSDEATEE 262
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BLAST of mRNA_S-ischiensis_contig83.19999.1 vs. uniprot
Match: W7TWA9_9STRA (14-3-3-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWA9_9STRA)

HSP 1 Score: 322 bits (825), Expect = 7.600e-106
Identity = 162/229 (70.74%), Postives = 195/229 (85.15%), Query Frame = 2 
Query:   65 VYMARLAEQAERFHDMVQSMKEAAAVPREMSVEERNLLSVAYKNMVGACRASWRVISTIEQKCEPEKLPLVRSYRQKIEKELSESCSGVISMVEGSLIPHCTSAEGKVFFYKMAGDYERYLAEFQQGDARKESSEKALEAYQNASSCAKEDLPPTHPIRLGLALNFSVFYYEIMSSPERACSLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGDQDD 751
            VY A+LAEQAERF +MV  MK  A  P+E+SVEERNLLSVAYKN++G+ RASWRVIS+IEQK E E+LPL+R Y+ KIE EL E C+ +++++E  LIP+ TS EGKVF++KM GDY RYLAEFQ G+ R+ESS+ AL AY+ A+  A+ DLPPTHPIRLGLALNFSVF+YEI +SP+RAC+LAK+AFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQ + D+
Sbjct:    8 VYKAKLAEQAERFDEMVDHMKAVAQQPQELSVEERNLLSVAYKNVIGSRRASWRVISSIEQKGEQERLPLIREYKAKIEDELLEICNDILNIIETELIPNSTSEEGKVFYFKMKGDYHRYLAEFQVGEKRRESSDAALSAYKCATDIAEHDLPPTHPIRLGLALNFSVFFYEIYNSPDRACALAKKAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQNEADE 236
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSI6_9STRA6.070e-11572.3814-3-3-like protein n=2 Tax=Tribonema minus TaxID=... [more]
A0A1Z5JP80_FISSO3.320e-10868.0714-3-3 protein epsilon n=4 Tax=Bacillariophycidae ... [more]
A0A7S1ZMH4_TRICV1.480e-10768.02Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1GIM8_CYCTE1.650e-10767.78Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S1H1R2_9STRA1.760e-10769.96Hypothetical protein n=2 Tax=Thalassionema nitzsch... [more]
A0A7S1CZ22_CYCTE5.980e-10770.98Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
B8BX06_THAPS1.200e-10666.6714-3-3-like protein n=3 Tax=Thalassiosirales TaxID... [more]
A0A1E7FAR9_9STRA1.530e-10668.3814-3-3 protein n=3 Tax=Bacillariaceae TaxID=33852 ... [more]
A0A7S0GLL5_9STRA6.560e-10665.45Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
W7TWA9_9STRA7.600e-10670.7414-3-3-like protein n=2 Tax=Monodopsidaceae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:392723..398350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score330.1
Seed ortholog evalue8.9e-88
Seed eggNOG ortholog2850.Phatr5651
KEGG koko:K06630
KEGG Pathwayko04011,ko04110,ko04114,ko04151,ko04390,ko04391,ko04722,ko05169,ko05203,map04011,map04110,map04114,map04151,map04390,map04391,map04722,map05169,map05203
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0031410,GO:0031982,GO:0042470,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0048770,GO:0097708
EggNOG free text desc.Belongs to the 14-3-3 family
EggNOG OGs2XEF0@2836,COG5040@1,KOG0841@2759
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog description14-3-3 domain
Ec32 orthologEc-09_004190.1
Exons6
Model size1270
Cds size747
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19999.1prot_S-ischiensis_contig83.19999.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 392769..397873 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817330.1625323-UTR-S-ischiensis_contig83:392722..3927681622817330.1625323-UTR-S-ischiensis_contig83:392722..392768Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 392723..392768 +
1695741031.941652-UTR-S-ischiensis_contig83:392722..3927681695741031.941652-UTR-S-ischiensis_contig83:392722..392768Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 392723..392768 +
1622817330.2443955-UTR-S-ischiensis_contig83:397873..3983501622817330.2443955-UTR-S-ischiensis_contig83:397873..398350Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 397874..398350 +
1695741032.053859-UTR-S-ischiensis_contig83:397873..3983501695741032.053859-UTR-S-ischiensis_contig83:397873..398350Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 397874..398350 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817330.1760974-CDS-S-ischiensis_contig83:392768..3928211622817330.1760974-CDS-S-ischiensis_contig83:392768..392821Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 392769..392821 +
1695741031.9592369-CDS-S-ischiensis_contig83:392768..3928211695741031.9592369-CDS-S-ischiensis_contig83:392768..392821Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 392769..392821 +
1622817330.1866949-CDS-S-ischiensis_contig83:394330..3944871622817330.1866949-CDS-S-ischiensis_contig83:394330..394487Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 394331..394487 +
1695741031.9739518-CDS-S-ischiensis_contig83:394330..3944871695741031.9739518-CDS-S-ischiensis_contig83:394330..394487Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 394331..394487 +
1622817330.1984625-CDS-S-ischiensis_contig83:395204..3953681622817330.1984625-CDS-S-ischiensis_contig83:395204..395368Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 395205..395368 +
1695741031.9900758-CDS-S-ischiensis_contig83:395204..3953681695741031.9900758-CDS-S-ischiensis_contig83:395204..395368Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 395205..395368 +
1622817330.2091484-CDS-S-ischiensis_contig83:396399..3966011622817330.2091484-CDS-S-ischiensis_contig83:396399..396601Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 396400..396601 +
1695741032.0078456-CDS-S-ischiensis_contig83:396399..3966011695741032.0078456-CDS-S-ischiensis_contig83:396399..396601Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 396400..396601 +
1622817330.221064-CDS-S-ischiensis_contig83:397071..3971461622817330.221064-CDS-S-ischiensis_contig83:397071..397146Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 397072..397146 +
1695741032.0205054-CDS-S-ischiensis_contig83:397071..3971461695741032.0205054-CDS-S-ischiensis_contig83:397071..397146Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 397072..397146 +
1622817330.2324798-CDS-S-ischiensis_contig83:397777..3978731622817330.2324798-CDS-S-ischiensis_contig83:397777..397873Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 397778..397873 +
1695741032.0351532-CDS-S-ischiensis_contig83:397777..3978731695741032.0351532-CDS-S-ischiensis_contig83:397777..397873Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 397778..397873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19999.1

>prot_S-ischiensis_contig83.19999.1 ID=prot_S-ischiensis_contig83.19999.1|Name=mRNA_S-ischiensis_contig83.19999.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=249bp
MDGNGHVYMARLAEQAERFHDMVQSMKEAAAVPREMSVEERNLLSVAYKN
MVGACRASWRVISTIEQKCEPEKLPLVRSYRQKIEKELSESCSGVISMVE
GSLIPHCTSAEGKVFFYKMAGDYERYLAEFQQGDARKESSEKALEAYQNA
SSCAKEDLPPTHPIRLGLALNFSVFYYEIMSSPERACSLAKQAFDDAIAE
LDTLSEESYKDSTLIMQLLRDNLTLWTSDQGDQDDDAPDGNAGPEEGS*
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mRNA from alignment at S-ischiensis_contig83:392723..398350+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19999.1 ID=mRNA_S-ischiensis_contig83.19999.1|Name=mRNA_S-ischiensis_contig83.19999.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5628bp|location=Sequence derived from alignment at S-ischiensis_contig83:392723..398350+ (Schizocladia ischiensis KU_0333)
TGTGGAACGGGCGCGGGGAAAGCCAGGTGCTGCGACAGGCGCGACAATGG
ACGGCAACGGGCATGTGTACATGGCAAGGCTGGCGGAGCAGGCCGAGAGG
TAAGAACCGCGTGGCGCCTCCTGCAAATGCAGCACGTCTGTTGGCAAGAA
GATACGAGAAGATTGAGCAGCGTGGACCGCGAGAGAAATGACGACGGAGG
GGCGGTGGTACCTCCCCGTGAGCGGCAATTTGCATGTCCAAGGCAGTCCA
CGTGTTAACCGTTGCAGCCTGCTAGTCTTGGTCGCAAGCAAAGCCTTTTT
CTCTAGGAAACATGCTAAGACAAGGGTGCCTTTGGCGCTCTCCACTGTTT
GAATGAGCGTCCAACAACATTGTTCGCATGAAGAACTATTAGACATTGGG
CGCACTTGACGCTCTCTGTTGTGGTAGCAACCACGGTGTGCCCATCAACG
CTGCATGCAGCGCTCCGAACCGGGGGTGCTTGCCGTTGGGCGGTCGATCG
ACAGGCCAAAAGCTATGCTCGACTTGGCTCGACAGACAAAACGCTACAAC
ATGCCAATGACCCTTGCTTGGGACCGGAGGGCGAGCTTATGCTGTTCAAG
TTGTGCTTGCTGTACTCTACAGCAGCCCAGATGCCATCTCCGTTGTACAC
TCACATGAGCAGTGCAGGGCACCACCAACCAGGATGACATTTTCTGTCTG
CCCCTGTTTTATTGATTCGGTTTTACAGTGACTACTTGTATTGGCTGCTT
TTTAGTCGGTATCAACAAGTAGCTGGCATGCCGCCTGTACGGCACTTAAT
TGCGGCAAGTTGCAGTGATACGGGCAGAATTGTAACGGCAAGTTGGCCAG
TGTCTCTATGATCGCTCCGGACATTTGCAGGAAGCGGAGTAACGGAGGCG
ATGTGAATGGTGGACATCCCTTGCCGATGGTTGCGACAAGAACATACGCA
CACGCTTGAAGCGGTTAGCATCACCAGTGCGACTGCTATACAGTACTACG
GTGAAGCACTTCCATGTGCTATTTGCTTCGAAGTACAGTAGTATTTTGTA
CTCCAGCGCTTCGAAGTGTACTGCGCTGCTGCTACGGCGGGGACTATTGC
TACGGCGATTCTAGTACTCGTCCCGCTGTCTCTGTACTTGGAGGTACCTA
CTTTCGAAGTGCATACTGCTCAAGTACTCGTACTACAGTACTCGAGTACT
TTGAAGTACTACAAAACTCCTGCTACGCATTTGCTAGTCAAAGTCACATG
ATCGATGGTCTCGGGACTACGGCAAGCACAACTTGAGTACATGTATATGA
AGTATACAGTACTCATGCACACATTTGCTGCTGTACTGCAGCGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTACACTACTACCGCTGCTACCGCTGCATG
ACTACTACCGGTACACTACAGTACCACGACTCGACTACTGTACTGTATGT
ACCATGGGTAGTGCTCATAGTACCGTACCATGCTGCACTGTACCTCCTGC
TCCTGCCCAAAATCATTCACTGGGGTCTCCTCCCATTGAGTCTCTCCCCC
AAAACACCCGCTGGGGCTCTTCCTTCGGCCCTTGGGGCTCGCTGCCCCTC
ACGGCCAGGTTTCATGACATGGTGCAAAGCATGAAGGAGGCGGCGGCAGT
GCCTCGGGAGATGAGTGTGGAGGAGCGCAACCTGCTGTCGGTGGCCTACA
AGAACATGGTCGGGGCGTGCAGGGCGAGCTGGCGCGTCATTAGCACCATC
GAGCAGAAGTGTGAGGTGTGTGTGCGTGCATGCGTGAGTGCGTGTGCCGT
TACGATGTGAATTGTAACGAGGTACAATCGCACATGTGTGAGATTGACTG
TTCTTGTATTAGTAGTTGTCCCATTTTAGAATTGAGTAATCTTGTACTAG
TGATTACCACATCAAGGAACGAAGAACAAGGAGGGGGGGGAAAGAAAAGA
AGCCGTTATGATGTATATGTGTGTGTTGATGTACTCCTCCGCACCATCAA
GAGCATGTGGCAGGTACCCAGGCAAGCGTACACACGCCCGTGCAGATAGT
GCTTCCGTGAGGCTGGAAGACTCACTGGAAGACTGCTGCCCTTTTACCGC
AATTGTCGGAGAGATTTTGCCCCCACGGGACAATTTTCGGGGGAATTATT
CTCGCCGGGAAGGTCCTGGATTGTCCCGAAAGCCCTCGGGAAAGTTTCCC
CCCGGTCCTGAGGGAATTTTCCGAGTTTTCCTGCACGAGTCCGACCAGTA
TTCGGCGAGAAAAGTCTCCCGAATATTGGCATGGGGGGCAAGATCTCTCC
AACGATTACGGTATTTACCGCCTGGGTCACCGCCTATGATACTCGACCGG
CCTCCAGGGTTGGTGCACGGCCTTGTGGGCTGATATGATCGATTTCCCCG
TCAAACTGTCCCTGACTCTAGCCCCAACCCTGAATATAAACGCTTGCCCC
AACCCTGTCCCCGCCCTCTGCCACTGCCGCAGCCCGAAAAGCTGCCGCTG
GTCCGCAGCTACCGGCAGAAGATCGAGAAGGAGTTGTCGGAGAGCTGCTC
GGGGGTTATCTCCATGGTGGAGGGGTCTCTCATCCCCCACTGCACCAGCG
CTGAGGGCAAGGTCTTCTTCTACAAGATGGCCGGGGACTACGAGAGGTGC
AGCTCGAGCGAAACCCCCACCCGCCTGCCCGCCCGCCCGCCAGCCAGTGA
TGGAATATCTAAGCAAATCAACCTATTTATCGACAGTACTGATCTACTTC
GAAGTATAGTATATATCTATCGATAGTCGATATTCGATAGTTTGACCCAA
ACTAAATATAAGTAGCTGGTAATGCCACCCACAACATTCGTCGAGCCTGA
TACCTATCTACTGATCGATATTCCAACCCTGCCGGCCCACCAGCGCGCTC
CAGAGCCTTGTTTCGCTTTCAACCCTCAGATGACAACGATGTCCTGCGAA
TACTCCTGCAAGCACCAGGTACTACTGTATGTGCACTGCTGTACAGTATG
TATGTGTACTCACGTGGTGCTTGCCGTAGTCCCGATACCATTGACCATGC
GCCTCGTTCGAGACGGAGCGGTAGTGCTTCAATCGTCTACCTATTTACCG
GCTCAATTTCAGCGCGCCAAGCTCGAGTTCACGGCGCTCGTGAGATTGCG
GGTACCTCGCACGATGTGTCTTGCGATACGCTGTGATGTTTACTCTGAAA
TGTGCTGCAGTTGTTGACAGCACGGCGCGTTAATCTCTGCGAGAGCGCTT
GATTCCACTACACAGTTGAGATTGTGAGCACTTGCCCCGCAAGTGCTCCG
TATTCTTTTGAGCCACTACTGTACTGTACTGTACCGTACTGTATGCTCCC
AGTAGCCCCATACTGCACGCCAACACTGTATGTTCCCAGTGAATGCCAAA
CCCTTTGAAGTACCCCAAGCACTTGAACTTCCTGTCCTCCTCCGACCCCC
CCCTTTTCTTCTTTCCCCCCCCCCTTGTTCTTGGTTCCTTAATGTGATAA
TCACTAATACAAGAACACTCAATTCTTAAATGGGAAAACTACTAATACGA
GAACAGTCAATCTCATGCAAGTGCGATTGTACCTCGTTTTATTTTTTTGA
ATTATTGTTTGGCATGCGAGGCCCGGGCTCCGTCCCAACAACCTGATTTA
TATGAATCACCCCACTCGGCGCACCAGGTACTTGGCAGAGTTCCAGCAGG
GCGACGCGCGCAAGGAGTCTTCCGAGAAGGCGCTGGAGGCCTACCAGAAC
GCCTCCAGCTGCGCCAAGGAAGACTTGCCACCCACGCACCCCATCCGTCT
CGGGCTGGCGCTGAATTTCAGCGTCTTCTATTATGAGATCATGAGCTCTC
CGGAGCGGGCGTGCAGTCTCGCGAAGCAGGTGTGTGCGTGTGTGTGTGTG
AGAGAGAGAGGCGTGTTAGAAACTCCTCGACACTGAAACCAAGTCGTTTG
GCGAGGAGATTTCTAACACTACTGTTGTGTGTTGTGTCTGTGTATTTGTG
GCTTGCGTGTGTTTGTGTGCGTGTTTGTGCGTGGGTGCGTGTTAGTTTGC
TTCTCAGTTGTTGTCGTCGTTGTTGTCGTGTGAGTGGGGTATATGTGTGC
GTGTGGGGGGGGGGGGAGCATGCATGCACACGCACGCTCGCCCACAGCCA
TGTGGCGGGGCCGTGGCAAAGAGGGGCACTACCGGTCAAATCCATTGCCG
CACACACGCGGCGGGCCTACTTCGACTACTCCTTACATACTTCGTACAAA
AAAAAACTCGGGCGGCTGCCAGCCCCACACCGCATGGCAGGTGTTCACGG
CGGCTTGCCCCCCCCCCCCCCCCCCCCCCAAAAAAAAAATGCCTCAAAGG
CGTTCGACGACGCGATCGCGGAACTCGACACCCTCTCCGAGGAGAGCTAC
AAGGACTCGACCCTCATCATGCAGGTGAGCAAGACCCTCCCGCCGTTTCA
CGCCCGTCCGTCTGTCACACTAGAAGAGGCCTCAATCGAGGGACGCCAAG
GCCCACTTCAAAGCAGTTTTGAGTATCACCGCTACTTGTACAGTTAGAAC
ACAGTCGAATCATTTTTTAGCAAGAAGGCAACAAGTCGAAATCATTTCTG
CGGCTTGGTCTACCACCCGGGCAATGCGTGCCGCATCCCTCACGGAAGCC
CATTTCTCGCCGAATGTTGCTTCCATTCTTGCCCATTGTAGAAGCTCACA
ACACCCCCACAAGACATGGGGAGACAGATTTTCCAGGGCTAGGGGGGACC
AGCCCAACCCTCGTTTTGGGTGTGAAACATTCTCCCCAAAAAGCGGCATG
GGGGGGACAAATGCGAGGTACATACTCAGCCCTTTTTCCGCGAAATATCC
CCTCGGCAACCGCGGGGTGTGAGTGTTTGGCAATGACAGTGCGCGTCACC
ATGCTCGGACTATGTCATGATGTGCTCGAATAGCAATCAAGTTCCCTGAG
TACACTTGTCCCGCCCGATTCCCCACCCCCGGGCCCCATCCCTCCCCACC
CCTTGCGTGCACGCCTGGCATTGCCATGGCGGGGTGCCGCCCCGGGCCGG
AGCAGCTTCTGAGGGACAACCTGACGCTGTGGACGTCCGACCAGGGGGAT
CAGGACGACGACGCCCCCGACGGGAACGCTGGCCCGGAAGAGGGGTCGTG
AAGGGGCTGCTCGAAGTAGTCATACAGCAGAGGAGTGCGGGCTTGTAGGG
TTTGCCTGTTTCGCGTTTTGGTGTACAGTACCGTACAGAGCAGTTCAGTT
CTGCAGCAGAATACTCGGGTACACGTTCTAAGCACTTTTGCTCTTGCGCA
TGCATATGCATGTCCCGTGCTTGGAAGCGTGTCACCTTCGCCGCTACCGT
ACCTACGGTATACTTGCTGACAGACTCGGAGCGCTACTGTACAAGATACT
GTACACCCAGCGGTACTGTTACTATAGCAGCAATGTACCACCAGATACAG
TAGGCTACTGGCAGTAGCACTGCACGTTCAAGCGCCAGCAATGCATCCGG
GAAAGCCATCTTGATATTCATGTGCCGCAGCTGATCCCCCGGGCCCCGGC
CCGTCCGAGTCTGCCGATGGAAGACCAGCCCTGATAGCCCCATTGGTAAG
CGCCTCAGGCCGGGAGAACACCGCAGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:392723..398350+

>mRNA_S-ischiensis_contig83.19999.1 ID=mRNA_S-ischiensis_contig83.19999.1|Name=mRNA_S-ischiensis_contig83.19999.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1494bp|location=Sequence derived from alignment at S-ischiensis_contig83:392723..398350+ (Schizocladia ischiensis KU_0333)
ATGGACGGCAACGGGCATGTGTACATGGCAAGGCTGGCGGAGCAGGCCGA
GAGATGGACGGCAACGGGCATGTGTACATGGCAAGGCTGGCGGAGCAGGC
CGAGAGGTTTCATGACATGGTGCAAAGCATGAAGGAGGCGGCGGCAGTGC
CTCGGGAGATGAGTGTGGAGGAGCGCAACCTGCTGTCGGTGGCCTACAAG
AACATGGTCGGGGCGTGCAGGGCGAGCTGGCGCGTCATTAGCACCATCGA
GCAGAAGTGTGAGGTTTCATGACATGGTGCAAAGCATGAAGGAGGCGGCG
GCAGTGCCTCGGGAGATGAGTGTGGAGGAGCGCAACCTGCTGTCGGTGGC
CTACAAGAACATGGTCGGGGCGTGCAGGGCGAGCTGGCGCGTCATTAGCA
CCATCGAGCAGAAGTGTGAGCCCGAAAAGCTGCCGCTGGTCCGCAGCTAC
CGGCAGAAGATCGAGAAGGAGTTGTCGGAGAGCTGCTCGGGGGTTATCTC
CATGGTGGAGGGGTCTCTCATCCCCCACTGCACCAGCGCTGAGGGCAAGG
TCTTCTTCTACAAGATGGCCGGGGACTACGAGAGCCCGAAAAGCTGCCGC
TGGTCCGCAGCTACCGGCAGAAGATCGAGAAGGAGTTGTCGGAGAGCTGC
TCGGGGGTTATCTCCATGGTGGAGGGGTCTCTCATCCCCCACTGCACCAG
CGCTGAGGGCAAGGTCTTCTTCTACAAGATGGCCGGGGACTACGAGAGGT
ACTTGGCAGAGTTCCAGCAGGGCGACGCGCGCAAGGAGTCTTCCGAGAAG
GCGCTGGAGGCCTACCAGAACGCCTCCAGCTGCGCCAAGGAAGACTTGCC
ACCCACGCACCCCATCCGTCTCGGGCTGGCGCTGAATTTCAGCGTCTTCT
ATTATGAGATCATGAGCTCTCCGGAGCGGGCGTGCAGTCTCGCGAAGCAG
GTACTTGGCAGAGTTCCAGCAGGGCGACGCGCGCAAGGAGTCTTCCGAGA
AGGCGCTGGAGGCCTACCAGAACGCCTCCAGCTGCGCCAAGGAAGACTTG
CCACCCACGCACCCCATCCGTCTCGGGCTGGCGCTGAATTTCAGCGTCTT
CTATTATGAGATCATGAGCTCTCCGGAGCGGGCGTGCAGTCTCGCGAAGC
AGGCGTTCGACGACGCGATCGCGGAACTCGACACCCTCTCCGAGGAGAGC
TACAAGGACTCGACCCTCATCATGCAGGCGTTCGACGACGCGATCGCGGA
ACTCGACACCCTCTCCGAGGAGAGCTACAAGGACTCGACCCTCATCATGC
AGCTTCTGAGGGACAACCTGACGCTGTGGACGTCCGACCAGGGGGATCAG
GACGACGACGCCCCCGACGGGAACGCTGGCCCGGAAGAGGGGTCGTGACT
TCTGAGGGACAACCTGACGCTGTGGACGTCCGACCAGGGGGATCAGGACG
ACGACGCCCCCGACGGGAACGCTGGCCCGGAAGAGGGGTCGTGA
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