mRNA_S-ischiensis_contig83.19989.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19989.1
Unique NamemRNA_S-ischiensis_contig83.19989.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:267889..268304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size416
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19989.1prot_S-ischiensis_contig83.19989.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 267951..268250 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817325.4683437-UTR-S-ischiensis_contig83:267888..2679501622817325.4683437-UTR-S-ischiensis_contig83:267888..267950Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 267889..267950 +
1695741027.9946365-UTR-S-ischiensis_contig83:267888..2679501695741027.9946365-UTR-S-ischiensis_contig83:267888..267950Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 267889..267950 +
1622817325.4914386-UTR-S-ischiensis_contig83:268250..2683041622817325.4914386-UTR-S-ischiensis_contig83:268250..268304Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 268251..268304 +
1695741028.0231438-UTR-S-ischiensis_contig83:268250..2683041695741028.0231438-UTR-S-ischiensis_contig83:268250..268304Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 268251..268304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817325.4791412-CDS-S-ischiensis_contig83:267950..2682501622817325.4791412-CDS-S-ischiensis_contig83:267950..268250Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 267951..268250 +
1695741028.0112846-CDS-S-ischiensis_contig83:267950..2682501695741028.0112846-CDS-S-ischiensis_contig83:267950..268250Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 267951..268250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19989.1

>prot_S-ischiensis_contig83.19989.1 ID=prot_S-ischiensis_contig83.19989.1|Name=mRNA_S-ischiensis_contig83.19989.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=100bp
MATDRPGGLQAVLPVLTPLLPPLLSCGRRSSGSGSPPRRGERMYCIQVGG
AGRAGAGACGAERPPRPLPATRARWGAAGFGATAWWRRRRRRRCLEPVP*
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mRNA from alignment at S-ischiensis_contig83:267889..268304+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19989.1 ID=mRNA_S-ischiensis_contig83.19989.1|Name=mRNA_S-ischiensis_contig83.19989.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=416bp|location=Sequence derived from alignment at S-ischiensis_contig83:267889..268304+ (Schizocladia ischiensis KU_0333)
GAGATGAGGAAGAGGGCAGGCGGGGACCGGGGACCGGCGCAAGGGGGCAG
GTTGGAGCGGGGATGGCGACTGACAGGCCAGGTGGATTGCAGGCTGTGTT
GCCAGTGTTGACGCCGCTGCTGCCACCGCTGCTGTCCTGCGGCCGCCGCT
CTTCCGGGTCGGGGTCGCCGCCGCGGCGGGGAGAGAGAATGTATTGTATC
CAGGTGGGGGGAGCTGGTCGCGCGGGCGCAGGGGCGTGTGGGGCGGAGAG
GCCACCCCGGCCGCTGCCCGCGACTCGAGCACGGTGGGGTGCCGCCGGGT
TCGGGGCAACAGCGTGGTGGAGGCGGCGGCGGAGGCGACGGTGCCTCGAA
CCTGTTCCGTAAGGGCCTGGAGCGGCTGTGGCTTCGGGCGGTGCCACCAC
TAGTGGTCAAGGTGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:267889..268304+

>mRNA_S-ischiensis_contig83.19989.1 ID=mRNA_S-ischiensis_contig83.19989.1|Name=mRNA_S-ischiensis_contig83.19989.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=600bp|location=Sequence derived from alignment at S-ischiensis_contig83:267889..268304+ (Schizocladia ischiensis KU_0333)
ATGGCGACTGACAGGCCAGGTGGATTGCAGGCTGTGTTGCCAGTGTTGAC
GCCGCTGCTGCCACCGCTGCTGTCCTGCGGCCGCCGCTCTTCCGGGTCGG
GGTCGCCGCCGCGGCGGGGAGAGAGAATGTATTGTATCCAGGTGGGGGGA
GCTGGTCGCGCGGGCGCAGGGGCGTGTGGGGCGGAGAGGCCACCCCGGCC
GCTGCCCGCGACTCGAGCACGGTGGGGTGCCGCCGGGTTCGGGGCAACAG
CGTGGTGGAGGCGGCGGCGGAGGCGACGGTGCCTCGAACCTGTTCCGTAA
ATGGCGACTGACAGGCCAGGTGGATTGCAGGCTGTGTTGCCAGTGTTGAC
GCCGCTGCTGCCACCGCTGCTGTCCTGCGGCCGCCGCTCTTCCGGGTCGG
GGTCGCCGCCGCGGCGGGGAGAGAGAATGTATTGTATCCAGGTGGGGGGA
GCTGGTCGCGCGGGCGCAGGGGCGTGTGGGGCGGAGAGGCCACCCCGGCC
GCTGCCCGCGACTCGAGCACGGTGGGGTGCCGCCGGGTTCGGGGCAACAG
CGTGGTGGAGGCGGCGGCGGAGGCGACGGTGCCTCGAACCTGTTCCGTAA
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