mRNA_S-ischiensis_contig83.19988.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19988.1
Unique NamemRNA_S-ischiensis_contig83.19988.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:265414..266444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size357
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817324.3070974-CDS-S-ischiensis_contig83:265413..2654841622817324.3070974-CDS-S-ischiensis_contig83:265413..265484Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 265414..265484 +
1695741027.3685231-CDS-S-ischiensis_contig83:265413..2654841695741027.3685231-CDS-S-ischiensis_contig83:265413..265484Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 265414..265484 +
1622817324.3213162-CDS-S-ischiensis_contig83:266158..2664441622817324.3213162-CDS-S-ischiensis_contig83:266158..266444Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 266159..266444 +
1695741027.3783953-CDS-S-ischiensis_contig83:266158..2664441695741027.3783953-CDS-S-ischiensis_contig83:266158..266444Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 266159..266444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19988.1prot_S-ischiensis_contig83.19988.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 265414..266444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19988.1

>prot_S-ischiensis_contig83.19988.1 ID=prot_S-ischiensis_contig83.19988.1|Name=mRNA_S-ischiensis_contig83.19988.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=119bp
MRAGGTRPARVTRELHGRRRLCLRQELPPPVPAPHRAVGRDPLHWRPRAR
GQRRRRPGRRPRCRWPGRGRRRRCRGRSCTPPPRGGVRGQQQRGRRLRPH
LKLRPQRGGQRRRLGAGGG
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mRNA from alignment at S-ischiensis_contig83:265414..266444+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19988.1 ID=mRNA_S-ischiensis_contig83.19988.1|Name=mRNA_S-ischiensis_contig83.19988.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1031bp|location=Sequence derived from alignment at S-ischiensis_contig83:265414..266444+ (Schizocladia ischiensis KU_0333)
ATGCGAGCAGGTGGCACAAGACCTGCGCGAGTCACGCGTGAGCTCCACGG
TCGTCGCAGACTCTGCCTCAGGTCAGCTAACGTGCACGTCCAAGTACCGC
GGCAGTATACATACTACAACAGCACAGTTGGAAGGTGCTACTAGGTGCTG
TCCGGTGCTTTTTCTGATTGCGGAGGCCTCGCTCGCTGGGCTCACCAGGC
TTTATTTATCAGCTGCGTCCAAGTTGCTTTGAAGTGTGTGTTTCCAACAA
GATGGTCACTGCTGGCAACTGCAGGCAAGTACCGGTGTTGCAGTACGGTA
GGTGCAGCACAGTACAGTTGGTTGCTGTACAGTCCTCGTATGTACAGTAC
TTGCAAGTAAAGTGCTGCTTGCTGAAGGACTACTCTCACAGTATACTACA
TTGCGTGCGAACATGCCGCAGCACACGCATCCACCCTCGTTAAAACACAC
CCCTTCCTATAAATAGCGCCCCCCTCTCCGCCTTGACCACCCCCCTCCCG
GCCCACCATCCCCCCTCACGCCCCGCACCCCCCTCCCTCCCCGCCCCCAC
CCTCTCCACAAACCCCAAACTCAACAATCCCAATTATGGATTAACGCGAG
ACCAGGCAAGTGTGATAATCGCTACTGTAATATAAGAACAGTGAATTGTA
AAATGGGACAACTACTAGTACGAGAACAGTCAATCTCACACACACACACA
TGCGATTGCACCTTGTTACAATTTATACGGATCACCACCCACCAGGCAAG
AGCTACCTCCGCCTGTACCCGCTCCGCACCGAGCCGTCGGGCGTGACCCA
CTTCATTGGCGTCCTCGAGCCCGTGGGCAGCGCCGGCGCCGCCCCGGGCG
ACGGCCACGATGCCGCTGGCCAGGCCGGGGGCGCCGGCGGCGGTGTCGTG
GGCGAAGCTGCACGCCTCCTCCTAGGGGAGGTGTGCGCGGCCAGCAACAG
CGAGGGAGACGCCTCCGACCTCACCTCAAACTCCGCCCACAGCGGGGAGG
GCAGCGGCGGCGGCTCGGCGCGGGAGGGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:265414..266444+

>mRNA_S-ischiensis_contig83.19988.1 ID=mRNA_S-ischiensis_contig83.19988.1|Name=mRNA_S-ischiensis_contig83.19988.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=714bp|location=Sequence derived from alignment at S-ischiensis_contig83:265414..266444+ (Schizocladia ischiensis KU_0333)
ATGCGAGCAGGTGGCACAAGACCTGCGCGAGTCACGCGTGAGCTCCACGG
TCGTCGCAGACTCTGCCTCAGATGCGAGCAGGTGGCACAAGACCTGCGCG
AGTCACGCGTGAGCTCCACGGTCGTCGCAGACTCTGCCTCAGGCAAGAGC
TACCTCCGCCTGTACCCGCTCCGCACCGAGCCGTCGGGCGTGACCCACTT
CATTGGCGTCCTCGAGCCCGTGGGCAGCGCCGGCGCCGCCCCGGGCGACG
GCCACGATGCCGCTGGCCAGGCCGGGGGCGCCGGCGGCGGTGTCGTGGGC
GAAGCTGCACGCCTCCTCCTAGGGGAGGTGTGCGCGGCCAGCAACAGCGA
GGGAGACGCCTCCGACCTCACCTCAAACTCCGCCCACAGCGGGGAGGGCA
GCGGCGGCGGCTCGGCGCGGGAGGGGGGGCAAGAGCTACCTCCGCCTGTA
CCCGCTCCGCACCGAGCCGTCGGGCGTGACCCACTTCATTGGCGTCCTCG
AGCCCGTGGGCAGCGCCGGCGCCGCCCCGGGCGACGGCCACGATGCCGCT
GGCCAGGCCGGGGGCGCCGGCGGCGGTGTCGTGGGCGAAGCTGCACGCCT
CCTCCTAGGGGAGGTGTGCGCGGCCAGCAACAGCGAGGGAGACGCCTCCG
ACCTCACCTCAAACTCCGCCCACAGCGGGGAGGGCAGCGGCGGCGGCTCG
GCGCGGGAGGGGGG
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