mRNA_S-ischiensis_contig83.19984.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19984.1
Unique NamemRNA_S-ischiensis_contig83.19984.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:233877..234617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size741
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19984.1prot_S-ischiensis_contig83.19984.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 234078..234518 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817325.410814-UTR-S-ischiensis_contig83:233876..2340771622817325.410814-UTR-S-ischiensis_contig83:233876..234077Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 233877..234077 +
1695741027.9611123-UTR-S-ischiensis_contig83:233876..2340771695741027.9611123-UTR-S-ischiensis_contig83:233876..234077Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 233877..234077 +
1622817325.4334629-UTR-S-ischiensis_contig83:234518..2346171622817325.4334629-UTR-S-ischiensis_contig83:234518..234617Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 234519..234617 +
1695741027.9820247-UTR-S-ischiensis_contig83:234518..2346171695741027.9820247-UTR-S-ischiensis_contig83:234518..234617Schizocladia ischiensis KU_0333UTRS-ischiensis_contig83 234519..234617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817325.4233663-CDS-S-ischiensis_contig83:234077..2345181622817325.4233663-CDS-S-ischiensis_contig83:234077..234518Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 234078..234518 +
1695741027.9732957-CDS-S-ischiensis_contig83:234077..2345181695741027.9732957-CDS-S-ischiensis_contig83:234077..234518Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 234078..234518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19984.1

>prot_S-ischiensis_contig83.19984.1 ID=prot_S-ischiensis_contig83.19984.1|Name=mRNA_S-ischiensis_contig83.19984.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=147bp
MQPTRRSSTAGSAAFQFSFSILTGQKGGRRNDRGTDSASLFLVFGMFRNR
AHLLVSHVDLLQICYPSTFAVTITASASEVFVVTCTHWLCLRVQPGSAHG
RQHRNTPPSGEPLAFGRERVVCFGAQTRSGRNCSNRRVLHFDLPVD*
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mRNA from alignment at S-ischiensis_contig83:233877..234617+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19984.1 ID=mRNA_S-ischiensis_contig83.19984.1|Name=mRNA_S-ischiensis_contig83.19984.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=741bp|location=Sequence derived from alignment at S-ischiensis_contig83:233877..234617+ (Schizocladia ischiensis KU_0333)
GTGGCCTCCCGGTAAGATGGTTGAGGGCATGCATGCGGATTTTATAGCAA
GTATTAGCGCCCTCTCTTGGCATGTTGAAGTTGGGACCCCGGGAAGGAAG
CCGTGGGAAGATGCATGCCCGGCAGGCCGTCAATGCAGCAACCTCCTCTG
TTGCTTACAGGGACGGCCATGCGGCGGTTTTTGTAGCAGTAGGATCCATG
TATGCAGCCAACGCGACGGTCTTCCACTGCTGGCTCCGCCGCTTTTCAGT
TCAGTTTCAGTATTTTGACTGGTCAAAAAGGGGGGAGGAGAAACGACAGA
GGAACTGATTCAGCATCTCTCTTTCTCGTTTTTGGTATGTTTCGAAATCG
CGCACATTTACTGGTGTCGCATGTAGATCTGTTACAGATCTGTTACCCCT
CGACCTTTGCCGTGACGATAACTGCAAGTGCCTCAGAGGTATTTGTAGTT
ACTTGTACGCATTGGCTGTGTCTACGGGTGCAGCCGGGTTCTGCACACGG
CAGACAGCACAGAAACACTCCTCCCTCTGGCGAGCCTTTGGCGTTTGGCC
GAGAGCGTGTAGTGTGCTTTGGGGCACAAACAAGAAGTGGGCGAAACTGC
AGCAACCGGCGAGTTCTTCATTTTGACCTTCCAGTTGATTAGGCAGGCAT
CTACAGATTTGGTCGATCGCATATATGCGAAATACCCCCCCAGAAACAAG
TGGGGGACTTCCTCCCTGAAATCGCCCACACTCACTGTGAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:233877..234617+

>mRNA_S-ischiensis_contig83.19984.1 ID=mRNA_S-ischiensis_contig83.19984.1|Name=mRNA_S-ischiensis_contig83.19984.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=882bp|location=Sequence derived from alignment at S-ischiensis_contig83:233877..234617+ (Schizocladia ischiensis KU_0333)
ATGCAGCCAACGCGACGGTCTTCCACTGCTGGCTCCGCCGCTTTTCAGTT
CAGTTTCAGTATTTTGACTGGTCAAAAAGGGGGGAGGAGAAACGACAGAG
GAACTGATTCAGCATCTCTCTTTCTCGTTTTTGGTATGTTTCGAAATCGC
GCACATTTACTGGTGTCGCATGTAGATCTGTTACAGATCTGTTACCCCTC
GACCTTTGCCGTGACGATAACTGCAAGTGCCTCAGAGGTATTTGTAGTTA
CTTGTACGCATTGGCTGTGTCTACGGGTGCAGCCGGGTTCTGCACACGGC
AGACAGCACAGAAACACTCCTCCCTCTGGCGAGCCTTTGGCGTTTGGCCG
AGAGCGTGTAGTGTGCTTTGGGGCACAAACAAGAAGTGGGCGAAACTGCA
GCAACCGGCGAGTTCTTCATTTTGACCTTCCAGTTGATTAGATGCAGCCA
ACGCGACGGTCTTCCACTGCTGGCTCCGCCGCTTTTCAGTTCAGTTTCAG
TATTTTGACTGGTCAAAAAGGGGGGAGGAGAAACGACAGAGGAACTGATT
CAGCATCTCTCTTTCTCGTTTTTGGTATGTTTCGAAATCGCGCACATTTA
CTGGTGTCGCATGTAGATCTGTTACAGATCTGTTACCCCTCGACCTTTGC
CGTGACGATAACTGCAAGTGCCTCAGAGGTATTTGTAGTTACTTGTACGC
ATTGGCTGTGTCTACGGGTGCAGCCGGGTTCTGCACACGGCAGACAGCAC
AGAAACACTCCTCCCTCTGGCGAGCCTTTGGCGTTTGGCCGAGAGCGTGT
AGTGTGCTTTGGGGCACAAACAAGAAGTGGGCGAAACTGCAGCAACCGGC
GAGTTCTTCATTTTGACCTTCCAGTTGATTAG
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